View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0740_low_62 (Length: 379)

Name: NF0740_low_62
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0740_low_62
NF0740_low_62
[»] chr8 (5 HSPs)
chr8 (126-194)||(8472618-8472686)
chr8 (127-194)||(32593464-32593531)
chr8 (130-194)||(541761-541825)
chr8 (5-33)||(18347140-18347168)
chr8 (154-194)||(20075586-20075626)
[»] chr7 (2 HSPs)
chr7 (126-194)||(1012240-1012308)
chr7 (126-194)||(321888-321954)
[»] chr5 (2 HSPs)
chr5 (129-194)||(4446332-4446397)
chr5 (142-195)||(22160471-22160524)
[»] chr6 (2 HSPs)
chr6 (142-195)||(20592056-20592109)
chr6 (142-195)||(19314507-19314560)
[»] chr4 (2 HSPs)
chr4 (126-194)||(37078940-37079008)
chr4 (154-195)||(30666554-30666595)
[»] chr2 (2 HSPs)
chr2 (198-277)||(29393063-29393142)
chr2 (142-195)||(817075-817128)
[»] chr1 (2 HSPs)
chr1 (142-195)||(47065085-47065138)
chr1 (151-195)||(47065837-47065881)
[»] chr3 (1 HSPs)
chr3 (5-33)||(34531294-34531322)


Alignment Details
Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 8472686 - 8472618
Alignment:
Q  126 aagattctaaattttcacacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaa 194  Q
    |||||||| || ||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  8472686 aagattcttaactttaacacccctcctcaagctggagcatacatgacatatgcaccaagcttgttacaa 8472618  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 194
Target Start/End: Complemental strand, 32593531 - 32593464
Alignment:
Q  127 agattctaaattttcacacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaa 194  Q
    ||||||| |||||| ||||| ||||| |||||||| ||| |||||||| |||||||||||||||||||    
T  32593531 agattcttaattttaacacctctcctcaagctggaacatgcatgacatgtgcaccaagcttgttacaa 32593464  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 541761 - 541825
Alignment:
Q  130 ttctaaattttcacacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaa 194  Q
    |||| |||||| ||||||||||| ||||||||||||   ||||||| ||||||||||||||||||    
T  541761 ttcttaattttaacacccctcctcaagctggagcatatctgacataagcaccaagcttgttacaa 541825  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 33
Target Start/End: Original strand, 18347140 - 18347168
Alignment:
Q  5 caataatatcatttgacttttctacaatt 33  Q
    |||||||||||||||||||||||||||||    
T  18347140 caataatatcatttgacttttctacaatt 18347168  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 20075626 - 20075586
Alignment:
Q  154 aagctggagcattcatgacatatgcaccaagcttgttacaa 194  Q
    |||||||||||| ||||||||||||||  ||||||||||||    
T  20075626 aagctggagcatacatgacatatgcacacagcttgttacaa 20075586  T

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Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 1012308 - 1012240
Alignment:
Q  126 aagattctaaattttcacacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaa 194  Q
    |||||||| || ||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  1012308 aagattcttaactttaacacccctcctcaagctggagcatacatgacatatgcaccaagcttgttacaa 1012240  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 321954 - 321888
Alignment:
Q  126 aagattctaaattttcacacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaa 194  Q
    |||||||| |||||| ||| ||||||| |||||| ||||| ||||||||  ||||||||||||||||||    
T  321954 aagattcttaattttaacatccctcctcaagctgaagcatacatgacat--gcaccaagcttgttacaa 321888  T

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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 4446397 - 4446332
Alignment:
Q  129 attctaaattttcacacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaa 194  Q
    ||||| || ||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  4446397 attcttaactttaacacccctcctcaagctggagcatacatgacatatgcaccaagcttgttacaa 4446332  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 22160471 - 22160524
Alignment:
Q  142 acacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaaa 195  Q
    |||| |||||| |||||| ||||| |||| ||||| ||||||||||||||||||    
T  22160471 acactcctcctcaagctgaagcatacatgtcatatacaccaagcttgttacaaa 22160524  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 20592056 - 20592109
Alignment:
Q  142 acacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaaa 195  Q
    |||| |||||| |||||||||||| |||| ||||||||||||||||||||||||    
T  20592056 acactcctcctcaagctggagcatacatgtcatatgcaccaagcttgttacaaa 20592109  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 19314560 - 19314507
Alignment:
Q  142 acacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaaa 195  Q
    |||| |||||| |||||||||||| | || |||||||||||||||||| |||||    
T  19314560 acactcctcctcaagctggagcatacttgtcatatgcaccaagcttgtaacaaa 19314507  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 37079008 - 37078940
Alignment:
Q  126 aagattctaaattttcacacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaa 194  Q
    |||||||| || ||| ||||||||||| |||||| ||||| ||||||||||  ||||||||||||||||    
T  37079008 aagattcttaactttaacacccctcctcaagctgtagcatacatgacatataaaccaagcttgttacaa 37078940  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 30666595 - 30666554
Alignment:
Q  154 aagctggagcattcatgacatatgcaccaagcttgttacaaa 195  Q
    |||||||||||| ||||  |||||||||||||||||||||||    
T  30666595 aagctggagcatgcatgttatatgcaccaagcttgttacaaa 30666554  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 277
Target Start/End: Original strand, 29393063 - 29393142
Alignment:
Q  198 tggccctgattttcgatcactttagcaattttctcagcaacaccgaaaccatcacctcgatgaagtgagttatcagtccc 277  Q
    ||||| |||||||||||||||| |||||||| ||||||| | || |||| |||| ||||||||| ||||  |||||||||    
T  29393063 tggccgtgattttcgatcacttcagcaatttgctcagcatcgcccaaactatcaactcgatgaactgagacatcagtccc 29393142  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 817075 - 817128
Alignment:
Q  142 acacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaaa 195  Q
    |||| |||||| |||||| ||||| |||| ||||||||||||||||||||||||    
T  817075 acactcctcctcaagctgaagcatacatgtcatatgcaccaagcttgttacaaa 817128  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 47065085 - 47065138
Alignment:
Q  142 acacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaaa 195  Q
    |||||| |||| ||||||| | || |||| ||||||||||||||||||||||||    
T  47065085 acacccttcctcaagctggggtatacatgtcatatgcaccaagcttgttacaaa 47065138  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 195
Target Start/End: Complemental strand, 47065881 - 47065837
Alignment:
Q  151 ctgaagctggagcattcatgacatatgcaccaagcttgttacaaa 195  Q
    |||||||| |||||| |||| ||||||||||||| ||||||||||    
T  47065881 ctgaagctagagcatacatgtcatatgcaccaagtttgttacaaa 47065837  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 33
Target Start/End: Original strand, 34531294 - 34531322
Alignment:
Q  5 caataatatcatttgacttttctacaatt 33  Q
    |||||||||||||||||||||||||||||    
T  34531294 caataatatcatttgacttttctacaatt 34531322  T

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