View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0740_low_63 (Length: 377)
Name: NF0740_low_63
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_low_63 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 97 - 305
Target Start/End: Original strand, 19756112 - 19756320
Alignment:
| Q |
97 |
ttcaagtattaatgagattctcatatcaacaaaagagtccaaacttacttcattatgatgtatgtgttgaatccttgccaatatgatcaacactaacgat |
196 |
Q |
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| T |
19756112 |
ttcaagtattaatgagattctcatatcaacaaaagaatccgaactcacttcattatgatgtatgtgttgaattcttgccaatatgatcaacactaaggat |
19756211 |
T |
|
| Q |
197 |
tgtatagcatttatgatgtatgtgtggtgtataagagaatttattaccttttgatgtttcaataaggaaggatgtccaatttcaataaccctctttaaag |
296 |
Q |
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| T |
19756212 |
tgtatagcatttatgatgtatgtgtggtgtataagagaacttattaccttttgatctttcaataaggaaggatgtccaatttcaataaccctctttaaag |
19756311 |
T |
|
| Q |
297 |
ggcgttcat |
305 |
Q |
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||||||||| |
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| T |
19756312 |
ggcgttcat |
19756320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 100 - 305
Target Start/End: Original strand, 24133884 - 24134083
Alignment:
| Q |
100 |
aagtattaatgagattctcatatcaacaaaagagtccaaacttacttcattatgatgtatgtgttgaatccttgccaatatgatcaacactaacgattgt |
199 |
Q |
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||||| ||||||||||||||||| |||||||| ||| |||| |||||||||||||||||||||||||||||||| |||||||| | || || | |
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| T |
24133884 |
aagtactaatgagattctcatattgacaaaaga------actcacttaattatgatgtatgtgttgaatccttgccaataggatcaacattgacaatctt |
24133977 |
T |
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| Q |
200 |
atagcatttatgatgtatgtgtggtgtataagagaatttattaccttttgatgtttcaataaggaaggatgtccaatttcaataaccctctttaaagggc |
299 |
Q |
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||| |||| ||||||| ||||| |||| ||||||| ||| ||||||||||| |||||| |||||| |||||||||||||||||| ||||||| ||||| |
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| T |
24133978 |
ataacattgatgatgtttgtgtagtgttcaagagaagttaataccttttgattattcaatgaggaagaatgtccaatttcaataactctctttatagggc |
24134077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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