View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0740_low_66 (Length: 373)
Name: NF0740_low_66
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_low_66 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 22 - 255
Target Start/End: Original strand, 2432949 - 2433182
Alignment:
| Q |
22 |
acacggatacatcgacaccgctgttagatacaatatcagtcttagtagttagtaagactaactagttagttgttcggattgacggtacaagttttattgt |
121 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2432949 |
acacggatacatcgacaccgctattagatacaatatcagtcttagtagttagtaagactaactagttagttgttcggattgacggtacaagttatattgt |
2433048 |
T |
|
| Q |
122 |
atttcttattctatcaacaattctaataccgataataatttaagaaaatgaattagttaaatgtaataacatgtgttattagtgaaatgtggctgatacc |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2433049 |
atttcttattctatcaacaattctaataccgataataatttaagaaaataaattagttaaatgtaataacatgtgttattaatgaaatgtggctgatacc |
2433148 |
T |
|
| Q |
222 |
acgagacatcaccggaagtgtttgtgttacgata |
255 |
Q |
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| T |
2433149 |
acgagacatcaccggaagtgttggtgttacgata |
2433182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 254 - 344
Target Start/End: Original strand, 2433215 - 2433305
Alignment:
| Q |
254 |
taaatattataattacaaataatcgaacaggtggagggcattgtaaacgtgaagaaagttattacatgggggaatgcatgagagcaagctt |
344 |
Q |
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| T |
2433215 |
taaatattataattacaaataatcgaacaggtggagggcattgtaaacgtgaagaaagttattacatgggggaatgcatgagagcaagctt |
2433305 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 14732884 - 14732937
Alignment:
| Q |
146 |
aataccgataataatttaagaaaatgaattagttaaatgtaataacatgtgtta |
199 |
Q |
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| T |
14732884 |
aataccggtgataatttaagaaaatgaattaattaaatgtaataacatgtgtta |
14732937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 28369858 - 28369813
Alignment:
| Q |
152 |
gataataatttaagaaaatgaattagttaaatgtaataacatgtgt |
197 |
Q |
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||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
28369858 |
gataataatttgagaaaatgaattaaataaatgtaataacatgtgt |
28369813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 42043253 - 42043208
Alignment:
| Q |
149 |
accgataataatttaagaaaatgaattagttaaatgtaataacatg |
194 |
Q |
| |
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|||||||||||||||| ||||||||||| || |||||||||||||| |
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| T |
42043253 |
accgataataatttaataaaatgaattaattgaatgtaataacatg |
42043208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 196
Target Start/End: Complemental strand, 35198280 - 35198240
Alignment:
| Q |
156 |
ataatttaagaaaatgaattagttaaatgtaataacatgtg |
196 |
Q |
| |
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||||||||||||||||||||| || |||||||| ||||||| |
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|
| T |
35198280 |
ataatttaagaaaatgaattaattgaatgtaatcacatgtg |
35198240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 200
Target Start/End: Original strand, 34625737 - 34625788
Alignment:
| Q |
149 |
accgataataatttaagaaaatgaattagttaaatgtaataacatgtgttat |
200 |
Q |
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|||||||||||||| ||||||||||||| || |||||||| |||| |||||| |
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| T |
34625737 |
accgataataatttgagaaaatgaattaattgaatgtaatcacatatgttat |
34625788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 199
Target Start/End: Original strand, 20119949 - 20119998
Alignment:
| Q |
150 |
ccgataataatttaagaaaatgaattagttaaatgtaataacatgtgtta |
199 |
Q |
| |
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||||||||||||| |||||||||| || || |||||||| |||||||||| |
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| T |
20119949 |
ccgataataatttgagaaaatgaaataatttaatgtaatcacatgtgtta |
20119998 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 26462698 - 26462653
Alignment:
| Q |
152 |
gataataatttaagaaaatgaattagttaaatgtaataacatgtgt |
197 |
Q |
| |
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|||||||||||||||||||||| || || |||||||| |||||||| |
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| T |
26462698 |
gataataatttaagaaaatgaaataattgaatgtaatcacatgtgt |
26462653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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