View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0740_low_69 (Length: 362)
Name: NF0740_low_69
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_low_69 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 1e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 13 - 237
Target Start/End: Complemental strand, 22526758 - 22526534
Alignment:
| Q |
13 |
acaggttaaaaatggaagaaaccaagaccaagattttcagcttcagaaaggaagtttcaaatatcaagaagaaaatggaagagtacgaccttgccatttt |
112 |
Q |
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| T |
22526758 |
acaggttaaaaatggaagaaaccaagaccaagatttccagcttcagaaaggaagttccaaatttcaagaagaaaatggaagagtacgaccttgccatttt |
22526659 |
T |
|
| Q |
113 |
cgaacatgaaaaggcgattcaagaattgaagtcgaacaaaaaatccctcttggaaagatatgaaagtcttaggaaggaagcatatcttaccatcgagaag |
212 |
Q |
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||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
22526658 |
cgaacatgaaaaggcaattcaaaaattgaagtcgaacaaaaaatccctcttggaaaaatatgaaagtcttaggaaggaagcatatcttaccatcaagaag |
22526559 |
T |
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| Q |
213 |
gtagaagatgtcaagcggcaaaatg |
237 |
Q |
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|| ||||||| ||| |||| ||||| |
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| T |
22526558 |
gtcgaagatgccaaacggctaaatg |
22526534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 62 - 221
Target Start/End: Complemental strand, 19754626 - 19754467
Alignment:
| Q |
62 |
ggaagtttcaaatatcaagaagaaaatggaagagtacgaccttgccattttcgaacatgaaaaggcgattcaagaattgaagtcgaacaaaaaatccctc |
161 |
Q |
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||||||| ||||| ||||||||||| |||| ||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
19754626 |
ggaagttccaaatgtcaagaagaaagtggaggagtacgaccttgccatttccgaatatgaaaaggcaattcaagaattgaagtcgaacaagaaatccctt |
19754527 |
T |
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| Q |
162 |
ttggaaagatatgaaagtcttaggaaggaagcatatcttaccatcgagaaggtagaagat |
221 |
Q |
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||||||| | ||||| | |||| ||||||||| ||||||||||| |||||| |||||| |
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| T |
19754526 |
ttggaaaaagatgaacggcttaaaaaggaagcaaatcttaccatcaggaaggtcgaagat |
19754467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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