View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0740_low_7 (Length: 638)
Name: NF0740_low_7
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_low_7 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 5188542 - 5188854
Alignment:
| Q |
1 |
caactcgttcctccgatttagaaaacgtaacacttttggttaaacaattaatgttaacactgaaagacaacaatcagttcatttcaaagataacatccac |
100 |
Q |
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||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5188542 |
caactcgttcctccggtttagaaaacgtaacactcttggttaaacaattaatgttaacactgaaagacaacaatcagttcatttcgaagataacatccac |
5188641 |
T |
|
| Q |
101 |
atgctctaaaggtaaacaaactaaatctagcttatagtttacgttaccaaaattcacaggacaatccaaacaaaccaaggaagtggtcactgagccattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5188642 |
atgctctaaaggtaaacaaactaaatctagcttatagtatatgttaccaaaattcacaggacaatccaaacaaaccaaggaagtggtcactgagccattg |
5188741 |
T |
|
| Q |
201 |
ttgtgacttaatcctcctaattctggttacagcagcagcaaaggctctcaaatttatgccttgggatgttttcaagttgaaggaattgttcttggtgatg |
300 |
Q |
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|||||| |||||||||| |||||||||||| || ||||| |||| |||||||||||||||| ||||||||||||||||||||||||| |||| |||| |
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| T |
5188742 |
ctgtgacctaatcctcctgattctggttacaacaacagcagaggcgctcaaatttatgccttaagatgttttcaagttgaaggaattgtgcttg--gatg |
5188839 |
T |
|
| Q |
301 |
atgtccaatttcaag |
315 |
Q |
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| T |
5188840 |
ttatccaatttcaag |
5188854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 357 - 498
Target Start/End: Original strand, 5188887 - 5189029
Alignment:
| Q |
357 |
cccatcaagtaattagtgaatttgtggtcaaaaagactcacaaaaacaaatggcatagcaccat-aagtatgatatagaataaagactgcaaaactgcgt |
455 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
5188887 |
cccatcaagtaattagcgaatttgtggtcaaaaagactcacaaaaacaaatggcatagcaccatcaagtatgatatagagcaaagactgcaaaactgcgt |
5188986 |
T |
|
| Q |
456 |
agttagcatgtgcgaaaatagaagtgagccaaagggtgaaaat |
498 |
Q |
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| T |
5188987 |
agttagcagatgcttcaatagaagtgagccaaagggtgaaaat |
5189029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 492 - 625
Target Start/End: Original strand, 5194606 - 5194741
Alignment:
| Q |
492 |
tgaaaatgtagcaactagcaagcatatttcatatcccnnnnnnnnn---caaatctatattatatggcaaacaaagtgccaaaatatgatgttcccgtta |
588 |
Q |
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| T |
5194606 |
tgaaaatgtagcaactagcaagcatatttcatatcccaaaaaaaaaaaacaaatctatattatatggcaaacat-gtgccaaaatatgatgttcccgtta |
5194704 |
T |
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| Q |
589 |
tatttaaaaaattaatataaaaagtaccctaccatat |
625 |
Q |
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|||||| |||||||||||||||||||||||||||||| |
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| T |
5194705 |
tatttagaaaattaatataaaaagtaccctaccatat |
5194741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 12 - 199
Target Start/End: Complemental strand, 20249974 - 20249787
Alignment:
| Q |
12 |
tccgatttagaaaacgtaacacttttggttaaacaattaatgttaacactgaaagacaacaatcagttcatttcaaagataacatccacatgctctaaag |
111 |
Q |
| |
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|||| |||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||| ||| |||| |||| ||||| | |||||| || ||| |
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| T |
20249974 |
tccggtttagaaaacgtaacactcttggtcaaacaattaatgttaacaccaaaagacaacaaccaggacattccaaatataactttcacatgttccaaaa |
20249875 |
T |
|
| Q |
112 |
gtaaacaaactaaatctagcttatagtttacgttaccaaaattcacaggacaatccaaacaaaccaaggaagtggtcactgagccatt |
199 |
Q |
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| T |
20249874 |
gtaaacagactaaatccaactcaaattacacatcaccaaaattcacaagacacttcacacacaccaaggaagtggtcatcgagccatt |
20249787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 17327536 - 17327602
Alignment:
| Q |
16 |
atttagaaaacgtaacacttttggttaaacaattaatgttaacactgaaagacaacaatcagttcat |
82 |
Q |
| |
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|||||||||| |||||||||||||||||||||||| | || |||| ||||||||||| |||||||| |
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| T |
17327536 |
atttagaaaatgtaacacttttggttaaacaattattattcacacaaaaagacaacaagcagttcat |
17327602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 22640545 - 22640599
Alignment:
| Q |
146 |
accaaaattcacaggacaatccaaacaaaccaaggaagtggtcactgagccattg |
200 |
Q |
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| T |
22640545 |
accaaaatttacaggacaatccaaacaaacaaagtaagtggtcaccaagccattg |
22640599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 176000 - 175964
Alignment:
| Q |
36 |
ttggttaaacaattaatgttaacactgaaagacaaca |
72 |
Q |
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|||||||||||||||||| ||||||| |||||||||| |
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| T |
176000 |
ttggttaaacaattaatgctaacactaaaagacaaca |
175964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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