View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0740_low_75 (Length: 356)
Name: NF0740_low_75
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_low_75 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 30 - 199
Target Start/End: Original strand, 6138973 - 6139142
Alignment:
| Q |
30 |
ctgaatttatcaatctgcagacagcagtacacataggttaaagggatttcgtaaagtggctcgagagagagatatgatcaatgcatatatcttgagttgt |
129 |
Q |
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| T |
6138973 |
ctgaatttatcaatctgcagacagcagtacacataggtcaaagggatttcgtaaagtggctcgagagagagatatgatcaatgcatatatcttgagttgt |
6139072 |
T |
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| Q |
130 |
ttcattattaggccatatatttcaagatttataaattgaaataatcaacaagacaggaagatggatgggg |
199 |
Q |
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| T |
6139073 |
ttcattattaggccatagatttcaagatttataaattgaaataatcaacaagacaggaagatggatgggg |
6139142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 34 - 199
Target Start/End: Complemental strand, 13283121 - 13282953
Alignment:
| Q |
34 |
atttatcaatctgcagacagcagtacacataggttaaagggatttcgtaaagtggctcgagagagagatatgatcaatgcatatatcttgagttgtttca |
133 |
Q |
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| T |
13283121 |
atttatcaatctgcagagagcagtacgcataagtcagagggatttcgtaaagtggctcgagagaga--tatgatcaatgcatatatcttgagttgtttta |
13283024 |
T |
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| Q |
134 |
ttattaggccatatatttcaagatttataaattgaaa-----taatcaacaagacaggaagatggatgggg |
199 |
Q |
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| T |
13283023 |
ttattaggccatagatttcaagatttatgaagtgaaatggagtaatcaacaagacaggaagatggatgggg |
13282953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 34 - 199
Target Start/End: Original strand, 6164294 - 6164457
Alignment:
| Q |
34 |
atttatcaatctgcagacagcagtacacataggttaaagggatttcgtaaagtggctcgagagagagatatgatcaatgcatatatcttgagttgtttca |
133 |
Q |
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| T |
6164294 |
atttatcattctgcagggagcagtacacataagtcagagggatttcgtaatgtggctcaagag--agatatgatcaatgcatatatcttgagttgtttca |
6164391 |
T |
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| Q |
134 |
ttattaggccatatatttcaagatttataaattgaaataatcaacaagacaggaagatggatgggg |
199 |
Q |
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| T |
6164392 |
ttattaggccattgatttcaagatttatgaagtgaaataatcaacaagacaggaggatggatgggg |
6164457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 34 - 131
Target Start/End: Original strand, 6234083 - 6234178
Alignment:
| Q |
34 |
atttatcaatctgcagacagcagtacacataggttaaagggatttcgtaaagtggctcgagagagagatatgatcaatgcatatatcttgagttgttt |
131 |
Q |
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| T |
6234083 |
atttatcaatctgcagagagcagtacacataggtcagagggatttcgtaaagtgtctc--gagagatatatgatcaatgcatatatcttgagttgttt |
6234178 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 126
Target Start/End: Original strand, 6241869 - 6241959
Alignment:
| Q |
34 |
atttatcaatctgcagacagcagtacacataggttaaagggatttcgtaaagtggctcgagagagagatatgatcaatgcatatatcttgagt |
126 |
Q |
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| T |
6241869 |
atttatcaatctgcagtgagaagtacacataggtcagagggattccgtaaagtggctc--gagagagatatgatcaatgcatatatcttgagt |
6241959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 265 - 332
Target Start/End: Original strand, 6139208 - 6139275
Alignment:
| Q |
265 |
gttctctggatttgcgaagtgttacaaagaagtaaaacagcatatccatctagtattattgatgatgt |
332 |
Q |
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| T |
6139208 |
gttctctggatttgcgaagtgttacaaagaagtaaaacaacttatccatcttgtattattgttgatgt |
6139275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 34 - 124
Target Start/End: Original strand, 6255097 - 6255185
Alignment:
| Q |
34 |
atttatcaatctgcagacagcagtacacataggttaaagggatttcgtaaagtggctcgagagagagatatgatcaatgcatatatcttga |
124 |
Q |
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||||||||||||||| | ||||||||||| |||| | ||||||||||||||||| ||| |||||||||||||||||||| |||||||||| |
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| T |
6255097 |
atttatcaatctgcaaagagcagtacacacaggtcagagggatttcgtaaagtgactc--gagagagatatgatcaatgcttatatcttga |
6255185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 126
Target Start/End: Complemental strand, 6859315 - 6859282
Alignment:
| Q |
93 |
agagagagatatgatcaatgcatatatcttgagt |
126 |
Q |
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| T |
6859315 |
agagagagacatgatcaatgcatatatcttgagt |
6859282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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