View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0740_low_76 (Length: 355)
Name: NF0740_low_76
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_low_76 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 27046668 - 27046909
Alignment:
| Q |
1 |
ttgagagtgcttctttgaatacatgacaaggggtcgaaacccgaatcagaatcatgaattgttgatggccggtatacatgaacagcttgacaaaggttat |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27046668 |
ttgagagtgcttctttgaatacatgacaaggg-tcgaaacccgaatcagaatcatgaattgttgatggccggtatacatgaacagcttgacaaaggttat |
27046766 |
T |
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| Q |
101 |
aattgttgtctttattgtcaagtgtagacagagaaagaatacaagaaggaatggacttggatggttttacaagcacaacatctttcatttctaggtttag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27046767 |
aattgttgtctttattgtcaagtgtagacagagaaagaatacaagaaggaatggacttggatggttttacaagcacaacatctttcatttctaggtttag |
27046866 |
T |
|
| Q |
201 |
ggattctttctgatacgccataatggaaaatgatgagaataat |
243 |
Q |
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| T |
27046867 |
gggttctttctgatacgccataatggaaaatgatgagaataat |
27046909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 27086793 - 27087030
Alignment:
| Q |
1 |
ttgagagtgcttctttgaatacatgacaaggggtcgaaacccgaatcagaatcatgaattgttgatggccggtatacatgaacagcttgacaaaggttat |
100 |
Q |
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||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| | || ||||| ||| |
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| T |
27086793 |
ttgagagcgcttctttgaatacatgacaaggg-tcgaaacccgaatcagaatcatgaattgttgatgaccggtatacatgaacaaatagaaaaaggctat |
27086891 |
T |
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| Q |
101 |
aattgttgtctttattgtcaagtgtagacagagaaagaatacaagaaggaatggacttggatggttttacaagcacaacatctttcatttctaggtttag |
200 |
Q |
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| T |
27086892 |
tattgatgtatatattgtcaagtgtagacagagaaagaatacaagaaggaatggacttggatgattttacaagcacaacatctttcatttctagctttag |
27086991 |
T |
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| Q |
201 |
ggattctttctgatacgccataatggaaaatgatgagaa |
239 |
Q |
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| T |
27086992 |
gggtgctttctgatccgccatattggaaaataatgagaa |
27087030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 27042645 - 27042888
Alignment:
| Q |
1 |
ttgagagtgcttctttgaatacatgacaaggggtcgaaacccgaatcagaatcatgaattgttgatggccggtatacatgaacagcttgacaaaggttat |
100 |
Q |
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||||||| ||||||||||||||||||| |||| | |||||| |||||||||||||| |||||||||| |||||||||||||||| |||||||| |||| |
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| T |
27042645 |
ttgagagcgcttctttgaatacatgactaggg-tggaaacctgaatcagaatcatgtattgttgatgaccggtatacatgaacaaaatgacaaagattat |
27042743 |
T |
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| Q |
101 |
aattgttgtctttattgtcaagtgtagacagagaaagaatacaagaaggaatggacttggatggttttacaagcacaacatctttcatttc------tag |
194 |
Q |
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||| ||| | |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||| |
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| T |
27042744 |
tatttatgtatatattgtcaagtgtagacaaagagagaatacaagaaggaatggacttggatggttttacaagtacaatatctttcatttctagctttag |
27042843 |
T |
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| Q |
195 |
gtttagggattctttctgatacgccataatggaaaatgatgagaa |
239 |
Q |
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| T |
27042844 |
gtttaggcgtgctttctgatacgccataatggaaaatgatgagaa |
27042888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 27100279 - 27100468
Alignment:
| Q |
1 |
ttgagagtgcttctttgaatacatgacaaggggtcgaaacccgaatcagaatcatgaattgttgatggccggtatacatgaacagcttgacaaaggttat |
100 |
Q |
| |
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|||||||||||||||| |||||||||||| | | ||||| | |||||||||||| ||||| || || || |||| |||||||| |||| |||||||| |
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| T |
27100279 |
ttgagagtgcttctttaaatacatgacaaaagtt-gaaactcaaatcagaatcattaattgatggtgatcgatatatatgaacagtttgagcaaggttat |
27100377 |
T |
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| Q |
101 |
aattgttgtctttattgtcaagtgtagacagagaaagaatacaagaaggaatggacttggatggttttacaagcacaacatctttcatttc |
191 |
Q |
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|| | | ||| ||||||||| ||| || ||||||||||||||||||||||| || || |||||||||| ||||||||||||||||||||| |
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| T |
27100378 |
tatagatttctctattgtcaattgtggaaagagaaagaatacaagaaggaattgattttgatggttttataagcacaacatctttcatttc |
27100468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 27106786 - 27106975
Alignment:
| Q |
1 |
ttgagagtgcttctttgaatacatgacaaggggtcgaaacccgaatcagaatcatgaattgttgatggccggtatacatgaacagcttgacaaaggttat |
100 |
Q |
| |
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|||| |||||||||||||||||||||||| | | ||||| |||||||||||||| ||||| || || |||||||||||||||| |||| |||||||| |
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| T |
27106786 |
ttgaaagtgcttctttgaatacatgacaaaagtt-gaaactcgaatcagaatcattaattgatggtgatcggtatacatgaacagtttgagcaaggttat |
27106884 |
T |
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| Q |
101 |
aattgttgtctttattgtcaagtgtagacagagaaagaatacaagaaggaatggacttggatggttttacaagcacaacatctttcatttc |
191 |
Q |
| |
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|| | | ||| ||||||||| |||||| || |||||||||||||||||||| || || |||||||||| || ||||| ||||||||||| |
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| T |
27106885 |
tatagatttctctattgtcaattgtagaaagtgaaagaatacaagaaggaattgattttgatggttttatgagtacaacgtctttcatttc |
27106975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 9 - 184
Target Start/End: Original strand, 27064564 - 27064738
Alignment:
| Q |
9 |
gcttctttgaatacatgacaaggggtcgaaacccgaatcagaatcatgaattgttgatggccggtatacatgaacagcttgacaaaggttataattgttg |
108 |
Q |
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|||||||||||||||||||||||| | ||||| |||||| |||||||||||| ||||| |||||||||||||||| ||| || ||||| |||| |
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| T |
27064564 |
gcttctttgaatacatgacaagggtt-gaaactggaatcataatcatgaattgatgatgatcggtatacatgaacagtttgggcaatgttattattggca |
27064662 |
T |
|
| Q |
109 |
tctttattgtcaagtgtagacagagaaagaatacaagaaggaatggacttggatggttttacaagcacaacatctt |
184 |
Q |
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|||||||||||||||| || ||||||||||||||||||| | |||| || ||||| |||||||||| |||||||| |
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| T |
27064663 |
cctttattgtcaagtgttgatagagaaagaatacaagaagaagtggattttgatggctttacaagcaaaacatctt |
27064738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 184
Target Start/End: Original strand, 27044591 - 27044768
Alignment:
| Q |
9 |
gcttctttgaatacatgacaaggggtcgaaacccgaatcagaatcatgaattgttgatggc---cggtatacatgaacagcttgacaaaggttataattg |
105 |
Q |
| |
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|||||||||||||||||||||||| | ||||| |||||| | |||||||||| ||||| ||||||||||||||| ||| || ||||| |||| |
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| T |
27044591 |
gcttctttgaatacatgacaagggtt-gaaactggaatcatagtcatgaattgctgatgatgatcggtatacatgaacaatttgggcaatgttattattg |
27044689 |
T |
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| Q |
106 |
ttgtctttattgtcaagtgtagacagagaaagaatacaagaaggaatggacttggatggttttacaagcacaacatctt |
184 |
Q |
| |
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||||||||| |||||||| ||||||||||||||||||||| ||||||| || ||||||||||||| |||||||| |
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| T |
27044690 |
gcacctttattgttcagtgtagatagagaaagaatacaagaaggagtggactttgaaggttttacaagcaaaacatctt |
27044768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 110 - 184
Target Start/End: Original strand, 27071633 - 27071707
Alignment:
| Q |
110 |
ctttattgtcaagtgtagacagagaaagaatacaagaaggaatggacttggatggttttacaagcacaacatctt |
184 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||| ||| |||| || |||||||||||||||| |||||||| |
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| T |
27071633 |
ctttattgtcaagtgttgacagagaaagaatacaagatggagtggattttgatggttttacaagcaaaacatctt |
27071707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 110 - 184
Target Start/End: Original strand, 27092429 - 27092503
Alignment:
| Q |
110 |
ctttattgtcaagtgtagacagagaaagaatacaagaaggaatggacttggatggttttacaagcacaacatctt |
184 |
Q |
| |
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|||||||||||||||| || ||||||||||||||||||||| |||| || ||||| |||||||||| |||||||| |
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| T |
27092429 |
ctttattgtcaagtgttgatagagaaagaatacaagaaggagtggattttgatggctttacaagcaaaacatctt |
27092503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 27047406 - 27047448
Alignment:
| Q |
197 |
ttagggattctttctgatacgccataatggaaaatgatgagaa |
239 |
Q |
| |
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|||||| | |||||| ||||||||||||||||||||||||||| |
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| T |
27047406 |
ttaggggtgctttctcatacgccataatggaaaatgatgagaa |
27047448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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