View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0740_low_80 (Length: 355)

Name: NF0740_low_80
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0740_low_80
NF0740_low_80
[»] chr4 (12 HSPs)
chr4 (9-355)||(3691162-3691506)
chr4 (132-172)||(22492922-22492962)
chr4 (234-352)||(21637743-21637859)
chr4 (133-169)||(4400731-4400767)
chr4 (132-169)||(5409491-5409528)
chr4 (13-112)||(24635505-24635605)
chr4 (313-352)||(17892326-17892365)
chr4 (139-169)||(49069467-49069497)
chr4 (132-169)||(24016624-24016660)
chr4 (132-160)||(11891926-11891954)
chr4 (132-160)||(11892672-11892700)
chr4 (132-168)||(27982158-27982194)
[»] chr3 (11 HSPs)
chr3 (31-115)||(29715928-29716009)
chr3 (13-77)||(21382066-21382130)
chr3 (133-169)||(29715906-29715942)
chr3 (133-171)||(21382149-21382187)
chr3 (234-294)||(30226555-30226613)
chr3 (132-167)||(1553757-1553792)
chr3 (130-168)||(3116648-3116686)
chr3 (138-168)||(7754335-7754365)
chr3 (132-169)||(15769173-15769210)
chr3 (138-167)||(30226717-30226746)
chr3 (132-168)||(5271734-5271770)
[»] chr5 (6 HSPs)
chr5 (239-348)||(19321455-19321563)
chr5 (22-75)||(19321719-19321772)
chr5 (133-169)||(21317404-21317440)
chr5 (133-169)||(41472438-41472474)
chr5 (132-167)||(12190645-12190680)
chr5 (9-51)||(38825021-38825063)
[»] chr7 (10 HSPs)
chr7 (195-352)||(23311797-23311954)
chr7 (235-301)||(12086967-12087033)
chr7 (132-169)||(18113760-18113797)
chr7 (31-83)||(27388320-27388372)
chr7 (139-169)||(7416874-7416904)
chr7 (313-355)||(21179908-21179950)
chr7 (139-169)||(49014905-49014935)
chr7 (132-169)||(3393250-3393287)
chr7 (132-168)||(23311983-23312019)
chr7 (195-272)||(38287636-38287714)
[»] scaffold0007 (2 HSPs)
scaffold0007 (213-293)||(181028-181108)
scaffold0007 (132-169)||(180945-180982)
[»] chr2 (8 HSPs)
chr2 (195-300)||(33741869-33741976)
chr2 (132-169)||(25933819-25933856)
chr2 (132-169)||(43214830-43214867)
chr2 (132-168)||(33737771-33737807)
chr2 (313-355)||(14824213-14824255)
chr2 (313-354)||(2319351-2319392)
chr2 (132-169)||(13289729-13289766)
chr2 (234-293)||(40497313-40497370)
[»] chr8 (9 HSPs)
chr8 (210-302)||(34139763-34139856)
chr8 (132-169)||(30804568-30804605)
chr8 (31-75)||(13415400-13415444)
chr8 (132-167)||(12358144-12358179)
chr8 (132-167)||(12359272-12359307)
chr8 (132-169)||(17702760-17702797)
chr8 (234-293)||(12358016-12358073)
chr8 (234-293)||(12359144-12359201)
chr8 (132-168)||(23265896-23265932)
[»] chr1 (6 HSPs)
chr1 (132-169)||(8829505-8829542)
chr1 (313-351)||(41675990-41676028)
chr1 (132-169)||(2222796-2222833)
chr1 (313-354)||(14167160-14167201)
chr1 (132-169)||(40776257-40776294)
chr1 (313-353)||(38218460-38218500)
[»] chr6 (1 HSPs)
chr6 (31-115)||(2423038-2423123)
[»] scaffold0240 (1 HSPs)
scaffold0240 (132-168)||(10864-10900)
[»] scaffold0006 (1 HSPs)
scaffold0006 (132-172)||(36600-36640)


Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 9 - 355
Target Start/End: Original strand, 3691162 - 3691506
Alignment:
Q  9 caataatatcagcgttcttaagacaacaaaaagagacaaaacagataatgaacaacaacataaatataattataataacattgttgataatgaaagtgac 108  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3691162 caataatatcagcgttcttaactcaacaaaaagagacaaaacagataatgaacaacaacatatatataattataataacattgttgataatgaaagtgac 3691261  T
Q  109 aattagttcc-ttnnnnnnnntatgaaagtgacaattagtcaattacatatatgatatatcccaatnnnnnnncactatagtagttcattacacatatct 207  Q
    |||||||||| ||        ||||||||||||||||||||||||||||||||||||||| ||||        |||  |||||||||||||||||||||     
T  3691262 aattagttcctttaaaaaaaatatgaaagtgacaattagtcaattacatatatgatatattccaaaaagaaaacac--tagtagttcattacacatatcc 3691359  T
Q  208 aaaaaataatagaaacatcgtatccggcacatatcggttttccacggtctatccctcgcgtatccctaatgtatctgaaaagtatcatacaattgnnnnn 307  Q
    |||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||         
T  3691360 aaaaaataatagaaacattgtatccgacacatatcggttttccacagtctatccctcgcgtatccctgatgtatctgaaaagtatcatacaattg-tttt 3691458  T
Q  308 nnnnnaaataaaatttaatctccggatactcttccgatacatatcaga 355  Q
         ||||||||||||||||||| |||||||||||||||||||||||    
T  3691459 tttttaaataaaatttaatctccgaatactcttccgatacatatcaga 3691506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 22492922 - 22492962
Alignment:
Q  132 gaaagtgacaattagtcaattacatatatgatatatcccaa 172  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  22492922 gaaagtgacaattagtcaattacatatatgatatatcccaa 22492962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 352
Target Start/End: Complemental strand, 21637859 - 21637743
Alignment:
Q  234 gcacatatcggttttccacggtctatccctcgcgtatccctaatgtatctgaaaagtatcatacaattgnnnnnnnnnnaaataaaatttaatctccgga 333  Q
    ||||||||||||||||||| | ||||||||  ||||||||  ||||||||||||||||||| | |||||          |||||||||||||||| ||||    
T  21637859 gcacatatcggttttccaccgcctatccct--cgtatcccagatgtatctgaaaagtatcagataattgttttttaaaaaaataaaatttaatcttcgga 21637762  T
Q  334 tactcttccgatacatatc 352  Q
    |||||| | ||||| ||||    
T  21637761 tactctcctgatacgtatc 21637743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 4400767 - 4400731
Alignment:
Q  133 aaagtgacaattagtcaattacatatatgatatatcc 169  Q
    |||||||||||||||||||||||||||||||||||||    
T  4400767 aaagtgacaattagtcaattacatatatgatatatcc 4400731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 5409528 - 5409491
Alignment:
Q  132 gaaagtgacaattagtcaattacatatatgatatatcc 169  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  5409528 gaaagcgacaattagtcaattacatatatgatatatcc 5409491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 24635505 - 24635605
Alignment:
Q  13 aatatcagcgttcttaagacaacaaaaagagacaaaacagataatgaacaacaacataaatataattataa-taacattgttgataatgaaagtgacaat 111  Q
    ||||||||| |||| || ||||||||||||||||| ||||| | |  ||||||||| |||||||| || || ||| |||| | |||| ||||||||||||    
T  24635505 aatatcagctttctcaaaacaacaaaaagagacaatacagacattcgacaacaacaaaaatataaatacaagtaatattgattataacgaaagtgacaat 24635604  T
Q  112 t 112  Q
    |    
T  24635605 t 24635605  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 313 - 352
Target Start/End: Complemental strand, 17892365 - 17892326
Alignment:
Q  313 aaataaaatttaatctccggatactcttccgatacatatc 352  Q
    |||||||||||||||| |||||||||||| ||||||||||    
T  17892365 aaataaaatttaatcttcggatactcttctgatacatatc 17892326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 169
Target Start/End: Complemental strand, 49069497 - 49069467
Alignment:
Q  139 acaattagtcaattacatatatgatatatcc 169  Q
    |||||||||||||||||||||||||||||||    
T  49069497 acaattagtcaattacatatatgatatatcc 49069467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 24016624 - 24016660
Alignment:
Q  132 gaaagtgacaattagtcaattacatatatgatatatcc 169  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  24016624 gaaagtgacaattagtcaattac-tatatgatatatcc 24016660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 160
Target Start/End: Complemental strand, 11891954 - 11891926
Alignment:
Q  132 gaaagtgacaattagtcaattacatatat 160  Q
    |||||||||||||||||||||||||||||    
T  11891954 gaaagtgacaattagtcaattacatatat 11891926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 160
Target Start/End: Complemental strand, 11892700 - 11892672
Alignment:
Q  132 gaaagtgacaattagtcaattacatatat 160  Q
    |||||||||||||||||||||||||||||    
T  11892700 gaaagtgacaattagtcaattacatatat 11892672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 27982194 - 27982158
Alignment:
Q  132 gaaagtgacaattagtcaattacatatatgatatatc 168  Q
    ||||| || ||||||||||||||||||||||||||||    
T  27982194 gaaagcgataattagtcaattacatatatgatatatc 27982158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 115
Target Start/End: Complemental strand, 29716009 - 29715928
Alignment:
Q  31 acaacaaaaagagacaaaa-cagataatgaacaacaacataaatataattataataacattgttgataatgaaagtgacaattagt 115  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||    | |||||||| | ||||| |||||||||||||||    
T  29716009 acaacaaaaagagacaaaaacagataatgaacaacaacataaatataa----agtaacattgataataataaaagtgacaattagt 29715928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 21382066 - 21382130
Alignment:
Q  13 aatatcagcgttcttaagacaacaaaaagagacaaaacagataatgaacaacaacataaatataa 77  Q
    |||||||||||||| ||  ||||||||||| |||||| ||||||||||||| ||||||| |||||    
T  21382066 aatatcagcgttctcaaaccaacaaaaagatacaaaatagataatgaacaaaaacataagtataa 21382130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 29715942 - 29715906
Alignment:
Q  133 aaagtgacaattagtcaattacatatatgatatatcc 169  Q
    |||||||||||||||||||||||||||||||||||||    
T  29715942 aaagtgacaattagtcaattacatatatgatatatcc 29715906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 171
Target Start/End: Original strand, 21382149 - 21382187
Alignment:
Q  133 aaagtgacaattagtcaattacatatatgatatatccca 171  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  21382149 aaagtgacaattagtcgattacatatatgatatatccca 21382187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 294
Target Start/End: Complemental strand, 30226613 - 30226555
Alignment:
Q  234 gcacatatcggttttccacggtctatccctcgcgtatccctaatgtatctgaaaagtatca 294  Q
    ||||||||||||||||||| | |||||||||   |||||| ||||||||||||||||||||    
T  30226613 gcacatatcggttttccaccgcctatccctca--tatcccaaatgtatctgaaaagtatca 30226555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 132 - 167
Target Start/End: Original strand, 1553757 - 1553792
Alignment:
Q  132 gaaagtgacaattagtcaattacatatatgatatat 167  Q
    ||||||||||| ||||||||||||||||||||||||    
T  1553757 gaaagtgacaactagtcaattacatatatgatatat 1553792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 168
Target Start/End: Complemental strand, 3116686 - 3116648
Alignment:
Q  130 atgaaagtgacaattagtcaattacatatatgatatatc 168  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  3116686 atgaaagtgacaattagtcgaatacatatatgatatatc 3116648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 168
Target Start/End: Complemental strand, 7754365 - 7754335
Alignment:
Q  138 gacaattagtcaattacatatatgatatatc 168  Q
    |||||||||||||||||||||||||||||||    
T  7754365 gacaattagtcaattacatatatgatatatc 7754335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 15769210 - 15769173
Alignment:
Q  132 gaaagtgacaattagtcaattacatatatgatatatcc 169  Q
    ||||| ||||||||||||||||||||||| ||||||||    
T  15769210 gaaagcgacaattagtcaattacatatatcatatatcc 15769173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 167
Target Start/End: Complemental strand, 30226746 - 30226717
Alignment:
Q  138 gacaattagtcaattacatatatgatatat 167  Q
    ||||||||||||||||||||||||||||||    
T  30226746 gacaattagtcaattacatatatgatatat 30226717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 5271770 - 5271734
Alignment:
Q  132 gaaagtgacaattagtcaattacatatatgatatatc 168  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  5271770 gaaagcgacaattagccaattacatatatgatatatc 5271734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 348
Target Start/End: Complemental strand, 19321563 - 19321455
Alignment:
Q  239 tatcggttttccacggtctatccctcgcgtatccctaatgtatctgaaaagtatcatacaattgnnnnnnnnnnaaataaaatttaatctccggatactc 338  Q
    |||||||||||||| | |||||||||||||||||   ||||||||||||||||||| |||||||          |||||||||||||||| |||||||||    
T  19321563 tatcggttttccactgcctatccctcgcgtatccacgatgtatctgaaaagtatcagacaattg-gtttttttaaaataaaatttaatcttcggatactc 19321465  T
Q  339 ttccgataca 348  Q
    ||| ||||||    
T  19321464 ttctgataca 19321455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 19321772 - 19321719
Alignment:
Q  22 gttcttaagacaacaaaaagagacaaaacagataatgaacaacaacataaatat 75  Q
    ||||| || ||||||||||||||||||||| |||||||||||||||||||||||    
T  19321772 gttctcaaaacaacaaaaagagacaaaacaaataatgaacaacaacataaatat 19321719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 21317440 - 21317404
Alignment:
Q  133 aaagtgacaattagtcaattacatatatgatatatcc 169  Q
    |||||||||||||||||||||||||||| ||||||||    
T  21317440 aaagtgacaattagtcaattacatatattatatatcc 21317404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 41472438 - 41472474
Alignment:
Q  133 aaagtgacaattagtcaattacatatatgatatatcc 169  Q
    |||| ||||||||||||||||||||||||||||||||    
T  41472438 aaagcgacaattagtcaattacatatatgatatatcc 41472474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 132 - 167
Target Start/End: Complemental strand, 12190680 - 12190645
Alignment:
Q  132 gaaagtgacaattagtcaattacatatatgatatat 167  Q
    ||||| ||||||||||||||||||||||||||||||    
T  12190680 gaaagcgacaattagtcaattacatatatgatatat 12190645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 38825063 - 38825021
Alignment:
Q  9 caataatatcagcgttcttaagacaacaaaaagagacaaaaca 51  Q
    ||||||||| |||||||| ||||||| ||||||||||||||||    
T  38825063 caataatatgagcgttctcaagacaataaaaagagacaaaaca 38825021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 352
Target Start/End: Complemental strand, 23311954 - 23311797
Alignment:
Q  195 attacacatatctaaaaaataatagaaacatc--gtatccggcacatatcggttttccacggtctatccctcgcgtatccctaatgtatctgaaaagtat 292  Q
    |||||| ||||  |||| ||||||||||||||  | | || ||||||||||||||||||| | ||||||||  ||||||||  |||||||||||||||||    
T  23311954 attacatatatacaaaatataatagaaacatcaagcagcctgcacatatcggttttccaccgcctatccct--cgtatcccagatgtatctgaaaagtat 23311857  T
Q  293 catacaattgnnnnnnnnnnaaataaaatttaatctccggatactcttccgatacatatc 352  Q
     | | |||||          |||||||||||||||| |||||||||| | ||||||||||    
T  23311856 tagataattgtttttaaaaaaaataaaatttaatcttcggatactctcctgatacatatc 23311797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 301
Target Start/End: Complemental strand, 12087033 - 12086967
Alignment:
Q  235 cacatatcggttttccacggtctatccctcgcgtatccctaatgtatctgaaaagtatcatacaatt 301  Q
    |||||||| ||||||||| |||||||||||||||||||  | | ||| |||||||||||| ||||||    
T  12087033 cacatatcagttttccactgtctatccctcgcgtatcctcactttatttgaaaagtatcaaacaatt 12086967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 18113760 - 18113797
Alignment:
Q  132 gaaagtgacaattagtcaattacatatatgatatatcc 169  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  18113760 gaaagcgacaattagtcaattacatatatgatatatcc 18113797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 27388372 - 27388320
Alignment:
Q  31 acaacaaaaagagacaaaacagataatgaacaacaacataaatataattataa 83  Q
    |||||||||||||| |||||| |||||||||||||||||| ||| || |||||    
T  27388372 acaacaaaaagagataaaacaaataatgaacaacaacatagatacaaatataa 27388320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 169
Target Start/End: Complemental strand, 7416904 - 7416874
Alignment:
Q  139 acaattagtcaattacatatatgatatatcc 169  Q
    |||||||||||||||||||||||||||||||    
T  7416904 acaattagtcaattacatatatgatatatcc 7416874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 355
Target Start/End: Complemental strand, 21179950 - 21179908
Alignment:
Q  313 aaataaaatttaatctccggatactcttccgatacatatcaga 355  Q
    |||||||||||||||| |||||||||| | |||||||||||||    
T  21179950 aaataaaatttaatcttcggatactctcctgatacatatcaga 21179908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 169
Target Start/End: Original strand, 49014905 - 49014935
Alignment:
Q  139 acaattagtcaattacatatatgatatatcc 169  Q
    |||||||||||||||||||||||||||||||    
T  49014905 acaattagtcaattacatatatgatatatcc 49014935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 3393287 - 3393250
Alignment:
Q  132 gaaagtgacaattagtcaattacatatatgatatatcc 169  Q
    ||||| ||||||||||||||||||||||| ||||||||    
T  3393287 gaaagcgacaattagtcaattacatatataatatatcc 3393250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 23312019 - 23311983
Alignment:
Q  132 gaaagtgacaattagtcaattacatatatgatatatc 168  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  23312019 gaaagcgacaattagtcaactacatatatgatatatc 23311983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 272
Target Start/End: Original strand, 38287636 - 38287714
Alignment:
Q  195 attacacatatctaaaaaataatagaaacatcgt--atccggcacatatcggttttccacggtctatccctcgcgtatcc 272  Q
    |||||| |||| | ||||||||||||||||| ||  ||||| ||| ||||  |||||||| |||||||||||||||||||    
T  38287636 attacatatatttcaaaaataatagaaacattgtgcatccg-cacgtatcaattttccaccgtctatccctcgcgtatcc 38287714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 213 - 293
Target Start/End: Original strand, 181028 - 181108
Alignment:
Q  213 ataatagaaacatc--gtatccggcacatatcggttttccacggtctatccctcgcgtatccctaatgtatctgaaaagtatc 293  Q
    ||||||||||||||  ||| || ||||||||||||||||||| | ||||||||  ||||||||  ||||||||||||||||||    
T  181028 ataatagaaacatcaggtagcccgcacatatcggttttccactgcctatccct--cgtatcccagatgtatctgaaaagtatc 181108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 180945 - 180982
Alignment:
Q  132 gaaagtgacaattagtcaattacatatatgatatatcc 169  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  180945 gaaagcgacaattagtcaattacatatatgatatatcc 180982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 195 - 300
Target Start/End: Original strand, 33741869 - 33741976
Alignment:
Q  195 attacacatatctaaaaaataatagaaacatc--gtatccggcacatatcggttttccacggtctatccctcgcgtatccctaatgtatctgaaaagtat 292  Q
    |||||| |||||  |||||||||| |||||||  |||||| || | ||||| |||||||| | ||||||||||||||| | | ||||||||||||| |||    
T  33741869 attacatatatcccaaaaataataaaaacatcatgtatcccgcgcgtatcgattttccaccgactatccctcgcgtattcttgatgtatctgaaaaatat 33741968  T
Q  293 catacaat 300  Q
    || |||||    
T  33741969 cagacaat 33741976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 25933856 - 25933819
Alignment:
Q  132 gaaagtgacaattagtcaattacatatatgatatatcc 169  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  25933856 gaaagcgacaattagtcaattacatatatgatatatcc 25933819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 43214867 - 43214830
Alignment:
Q  132 gaaagtgacaattagtcaattacatatatgatatatcc 169  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  43214867 gaaagcgacaattagtcaattacatatatgatatatcc 43214830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 33737771 - 33737807
Alignment:
Q  132 gaaagtgacaattagtcaattacatatatgatatatc 168  Q
    |||||| ||||||||||||||||||||||||||||||    
T  33737771 gaaagtaacaattagtcaattacatatatgatatatc 33737807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 355
Target Start/End: Complemental strand, 14824255 - 14824213
Alignment:
Q  313 aaataaaatttaatctccggatactcttccgatacatatcaga 355  Q
    |||||||||||||||| |||||||||||| ||||| |||||||    
T  14824255 aaataaaatttaatcttcggatactcttctgatacgtatcaga 14824213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 354
Target Start/End: Complemental strand, 2319392 - 2319351
Alignment:
Q  313 aaataaaatttaatctccggatactcttccgatacatatcag 354  Q
    |||||||||||||||| |||||||||||| ||||| ||||||    
T  2319392 aaataaaatttaatcttcggatactcttctgatacgtatcag 2319351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 13289766 - 13289729
Alignment:
Q  132 gaaagtgacaattagtcaattacatatatgatatatcc 169  Q
    ||||| |||||||||| |||||||||||||||||||||    
T  13289766 gaaagcgacaattagtaaattacatatatgatatatcc 13289729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 293
Target Start/End: Original strand, 40497313 - 40497370
Alignment:
Q  234 gcacatatcggttttccacggtctatccctcgcgtatccctaatgtatctgaaaagtatc 293  Q
    ||||||||| ||||||||| | |||| |||||  |||||| |||||||||||||||||||    
T  40497313 gcacatatcagttttccactgcctattcctcg--tatcccaaatgtatctgaaaagtatc 40497370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 302
Target Start/End: Complemental strand, 34139856 - 34139763
Alignment:
Q  210 aaaataatagaaacatc--gtatccggcacatatcggttttccacggtctatccctcgcgtatccctaatgtatctgaaaagtatcatacaattg 302  Q
    |||||||||||||||||  ||||||| ||| ||||| |||||||| ||| ||| | | ||||||||  ||||||||||||||||||| |||||||    
T  34139856 aaaataatagaaacatcatgtatccg-cacgtatcgattttccaccgtcaatcgcccacgtatccccgatgtatctgaaaagtatcaaacaattg 34139763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 30804568 - 30804605
Alignment:
Q  132 gaaagtgacaattagtcaattacatatatgatatatcc 169  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  30804568 gaaagcgacaattagtcaattacatatatgatatatcc 30804605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 13415444 - 13415400
Alignment:
Q  31 acaacaaaaagagacaaaacagataatgaacaacaacataaatat 75  Q
    |||| |||||||||||||||| ||||| |||||||||||||||||    
T  13415444 acaataaaaagagacaaaacatataattaacaacaacataaatat 13415400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 132 - 167
Target Start/End: Complemental strand, 12358179 - 12358144
Alignment:
Q  132 gaaagtgacaattagtcaattacatatatgatatat 167  Q
    ||||| ||||||||||||||||||||||||||||||    
T  12358179 gaaagcgacaattagtcaattacatatatgatatat 12358144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 132 - 167
Target Start/End: Complemental strand, 12359307 - 12359272
Alignment:
Q  132 gaaagtgacaattagtcaattacatatatgatatat 167  Q
    ||||| ||||||||||||||||||||||||||||||    
T  12359307 gaaagcgacaattagtcaattacatatatgatatat 12359272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 17702797 - 17702760
Alignment:
Q  132 gaaagtgacaattagtcaattacatatatgatatatcc 169  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  17702797 gaaaatgacatttagtcaattacatatatgatatatcc 17702760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 293
Target Start/End: Complemental strand, 12358073 - 12358016
Alignment:
Q  234 gcacatatcggttttccacggtctatccctcgcgtatccctaatgtatctgaaaagtatc 293  Q
    ||||| ||||||||||||| | ||||||||||  ||||||  ||||||||||||||||||    
T  12358073 gcacagatcggttttccaccgcctatccctcg--tatcccagatgtatctgaaaagtatc 12358016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 293
Target Start/End: Complemental strand, 12359201 - 12359144
Alignment:
Q  234 gcacatatcggttttccacggtctatccctcgcgtatccctaatgtatctgaaaagtatc 293  Q
    ||||| ||||||||||||| | ||||||||||  ||||||  ||||||||||||||||||    
T  12359201 gcacagatcggttttccaccgcctatccctcg--tatcccagatgtatctgaaaagtatc 12359144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 23265932 - 23265896
Alignment:
Q  132 gaaagtgacaattagtcaattacatatatgatatatc 168  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  23265932 gaaagcgacaattagtcaactacatatatgatatatc 23265896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 8829505 - 8829542
Alignment:
Q  132 gaaagtgacaattagtcaattacatatatgatatatcc 169  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  8829505 gaaagcgacaattagtcaattacatatatgatatatcc 8829542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 351
Target Start/End: Original strand, 41675990 - 41676028
Alignment:
Q  313 aaataaaatttaatctccggatactcttccgatacatat 351  Q
    |||||||||||||||| ||||||||||||| ||||||||    
T  41675990 aaataaaatttaatcttcggatactcttccaatacatat 41676028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 2222796 - 2222833
Alignment:
Q  132 gaaagtgacaattagtcaattacatatatgatatatcc 169  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  2222796 gaaagcgacaattaatcaattacatatatgatatatcc 2222833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 354
Target Start/End: Complemental strand, 14167201 - 14167160
Alignment:
Q  313 aaataaaatttaatctccggatactcttccgatacatatcag 354  Q
    |||||||||||||||| |||||||||||| ||||| ||||||    
T  14167201 aaataaaatttaatcttcggatactcttctgatacgtatcag 14167160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 40776294 - 40776257
Alignment:
Q  132 gaaagtgacaattagtcaattacatatatgatatatcc 169  Q
    ||||| || |||||||||||||||||||||||||||||    
T  40776294 gaaagcgaaaattagtcaattacatatatgatatatcc 40776257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 353
Target Start/End: Complemental strand, 38218500 - 38218460
Alignment:
Q  313 aaataaaatttaatctccggatactcttccgatacatatca 353  Q
    |||||||||||||||| |||||||||||| ||||| |||||    
T  38218500 aaataaaatttaatcttcggatactcttctgatacgtatca 38218460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 115
Target Start/End: Complemental strand, 2423123 - 2423038
Alignment:
Q  31 acaacaaaaagagacaaaacagataatgaacaacaacataaatataattat-aataacattgttgataatgaaagtgacaattagt 115  Q
    |||| |||||||||||||| | | | || ||||||||||||||| || ||| ||||| |||| | |||| ||||||||||||||||    
T  2423123 acaataaaaagagacaaaagatacactggacaacaacataaataaaaatataaataatattgataataaagaaagtgacaattagt 2423038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 10900 - 10864
Alignment:
Q  132 gaaagtgacaattagtcaattacatatatgatatatc 168  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  10900 gaaagcgacgattagtcaattacatatatgatatatc 10864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 36640 - 36600
Alignment:
Q  132 gaaagtgacaattagtcaattacatatatgatatatcccaa 172  Q
    |||||| | |||||||||||||||||||||||||| |||||    
T  36640 gaaagtaaaaattagtcaattacatatatgatataccccaa 36600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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