View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0740_low_83 (Length: 351)

Name: NF0740_low_83
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0740_low_83
NF0740_low_83
[»] chr7 (13 HSPs)
chr7 (96-338)||(4712759-4713001)
chr7 (100-338)||(4846714-4846952)
chr7 (129-313)||(4697908-4698092)
chr7 (129-338)||(4863103-4863312)
chr7 (100-336)||(4784530-4784766)
chr7 (100-336)||(4816959-4817195)
chr7 (188-288)||(4642977-4643077)
chr7 (188-288)||(4666208-4666308)
chr7 (188-338)||(4630182-4630332)
chr7 (188-337)||(4661077-4661226)
chr7 (146-338)||(4652751-4652943)
chr7 (188-309)||(4636130-4636251)
chr7 (220-288)||(4671945-4672013)
[»] chr6 (1 HSPs)
chr6 (245-336)||(5479305-5479396)


Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 96 - 338
Target Start/End: Complemental strand, 4713001 - 4712759
Alignment:
Q  96 cacataatagaatattaagtctttgattccacctaagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataaac 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4713001 cacataatagaatattaagtctttgattccacctaagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataaac 4712902  T
Q  196 aagaatcatctctgcatcttcattgcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaactcgatttcattcatgaattcattt 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4712901 aagaatcatctctgcatcttcattgcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaactcgatttcattcatgaattcattt 4712802  T
Q  296 agaccttgtcgagaacccaatttacgacgttttatcgcaacag 338  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  4712801 agaccttgtcgagaacccaatttacgacgttttatcgcaacag 4712759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 100 - 338
Target Start/End: Complemental strand, 4846952 - 4846714
Alignment:
Q  100 taatagaatattaagtctttgattccacctaagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataaacaaga 199  Q
    ||||||||| |  |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||| ||| ||| ||||||||||| |||    
T  4846952 taatagaatctcgagtctttgattccacctaagaggttcattatccgaaccatagagatgttcactgagagtaccacgttgcatgaagtcataaactaga 4846853  T
Q  200 atcatctctgcatcttcattgcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaactcgatttcattcatgaattcatttagac 299  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4846852 atcatctctgcatcttcgttgcaatatccaatgagggaaaccaagtgaatatgacgaagctgagagagcatctcgatttcattcatgaattcatttagac 4846753  T
Q  300 cttgtcgagaacccaatttacgacgttttatcgcaacag 338  Q
    ||| ||||||||||  |||||||||||||||||||||||    
T  4846752 cttatcgagaacccggtttacgacgttttatcgcaacag 4846714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 129 - 313
Target Start/End: Complemental strand, 4698092 - 4697908
Alignment:
Q  129 taagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataaacaagaatcatctctgcatcttcattgcaatatcc 228  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||| ||||||| ||||| ||||| ||||||||||||||| |||| |||||||||||    
T  4698092 taagaggttcgttatccgaaccatagagatattcacgaagagtgccacgttccatgaagtcgtaaacgagaatcatctctgcaccttcgttgcaatatcc 4697993  T
Q  229 aatgagggaaactaagtgaatatgacgaagctgagagagcaactcgatttcattcatgaattcatttagaccttgtcgagaaccc 313  Q
    |||||| ||||| |||||||| |||||||| ||||||||||||||||||||||||||||| || |||| ||||||| ||||||||    
T  4697992 aatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttcattcatgaactcgtttacaccttgttgagaaccc 4697908  T

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Target: chr7; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 129 - 338
Target Start/End: Original strand, 4863103 - 4863312
Alignment:
Q  129 taagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataaacaagaatcatctctgcatcttcattgcaatatcc 228  Q
    |||||||||| |||||||||||||| |||| |||||||||||||||| ||| ||| ||||||||||| |||||||||||  || |||| |||||||||||    
T  4863103 taagaggttcattatccgaaccataaagatattcacggagagtgccacgttgcatgaagtcataaacgagaatcatctcctcaccttcgttgcaatatcc 4863202  T
Q  229 aatgagggaaactaagtgaatatgacgaagctgagagagcaactcgatttcattcatgaattcatttagaccttgtcgagaacccaatttacgacgtttt 328  Q
    |||||| ||||| |||||||||||||||||||||||||| || ||||| ||||||||||| ||||||| ||||||| |||||||   |||| ||||||||    
T  4863203 aatgagagaaaccaagtgaatatgacgaagctgagagagtaattcgatctcattcatgaactcatttataccttgttgagaacctggtttaagacgtttt 4863302  T
Q  329 atcgcaacag 338  Q
    ||||||||||    
T  4863303 atcgcaacag 4863312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 100 - 336
Target Start/End: Complemental strand, 4784766 - 4784530
Alignment:
Q  100 taatagaatattaagtctttgattccacctaagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataaacaaga 199  Q
    ||||||||| | ||| || || |||||  ||||||||| |||||| || ||||| |||| |||||  ||| ||||| ||| ||| ||||||||||| |||    
T  4784766 taatagaatctcaagcctctgcttccaggtaagaggtttgttatctgatccataaagatattcacatagactgccacgttgcatgaagtcataaacgaga 4784667  T
Q  200 atcatctctgcatcttcattgcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaactcgatttcattcatgaattcatttagac 299  Q
    ||||||||| || ||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| || ||||||| ||| || || | ||    
T  4784666 atcatctctacaccttcattgcaatatccaataagtgaaaccaagtgaatatgacgaagctgagagagcaactcaatctcattcaagaactcgttcacac 4784567  T
Q  300 cttgtcgagaacccaatttacgacgttttatcgcaac 336  Q
    ||||| |||||||   |||| ||||||||||||||||    
T  4784566 cttgttgagaacctggtttaagacgttttatcgcaac 4784530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 100 - 336
Target Start/End: Complemental strand, 4817195 - 4816959
Alignment:
Q  100 taatagaatattaagtctttgattccacctaagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataaacaaga 199  Q
    ||||||||| | ||| || || |||||  ||||||||| |||||| || ||||| |||| |||||  ||| ||||| ||| ||| ||||||||||| |||    
T  4817195 taatagaatctcaagcctctgcttccaggtaagaggtttgttatctgatccataaagatattcacatagactgccacgttgcatgaagtcataaacgaga 4817096  T
Q  200 atcatctctgcatcttcattgcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaactcgatttcattcatgaattcatttagac 299  Q
    ||||||||| || ||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| || ||||||| ||| || || | ||    
T  4817095 atcatctctacaccttcattgcaatatccaataagtgaaaccaagtgaatatgacgaagctgagagagcaactcaatctcattcaagaactcgttaacac 4816996  T
Q  300 cttgtcgagaacccaatttacgacgttttatcgcaac 336  Q
    ||||| |||||||   |||| ||||||||||||||||    
T  4816995 cttgttgagaaccaggtttaagacgttttatcgcaac 4816959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 188 - 288
Target Start/End: Original strand, 4642977 - 4643077
Alignment:
Q  188 tcataaacaagaatcatctctgcatcttcattgcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaactcgatttcattcatga 287  Q
    |||||||| | |||||||||||  || || ||||||||||| | |||||| || |||||||| || |||||||| |||||||||||||||||||||||||    
T  4642977 tcataaaccaaaatcatctctgtgtcatcgttgcaatatcccacgagggacaccaagtgaatgtggcgaagctgggagagcaactcgatttcattcatga 4643076  T
Q  288 a 288  Q
    |    
T  4643077 a 4643077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 188 - 288
Target Start/End: Original strand, 4666208 - 4666308
Alignment:
Q  188 tcataaacaagaatcatctctgcatcttcattgcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaactcgatttcattcatga 287  Q
    |||||||| |||||||||||||  || |||||||||||||| |  ||||| || |||||||| || ||||||||||||||||| |||||||| |||||||    
T  4666208 tcataaaccagaatcatctctgtgtcgtcattgcaatatcccacaagggataccaagtgaatgtggcgaagctgagagagcaattcgatttcgttcatga 4666307  T
Q  288 a 288  Q
    |    
T  4666308 a 4666308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 188 - 338
Target Start/End: Original strand, 4630182 - 4630332
Alignment:
Q  188 tcataaacaagaatcatctctgcatcttcattgcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaactcgatttcattcatga 287  Q
    |||||||| |||||||||||||  |  |||||||||||||| |  ||||| || |||||||| || |||||||| ||||||||||||||||| |||||||    
T  4630182 tcataaaccagaatcatctctgtgttgtcattgcaatatcctacaagggacaccaagtgaatgtggcgaagctgggagagcaactcgatttcgttcatga 4630281  T
Q  288 attcatttagaccttgtcgagaacccaatttacgacgttttatcgcaacag 338  Q
    | || ||   ||||||| |||| ||  ||||  | ||||||||||||||||    
T  4630282 actcgttggcaccttgttgagagcctgatttgaggcgttttatcgcaacag 4630332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 188 - 337
Target Start/End: Original strand, 4661077 - 4661226
Alignment:
Q  188 tcataaacaagaatcatctctgcatcttcattgcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaactcgatttcattcatga 287  Q
    |||||||| |||||||||| ||  |  ||||| |||||||| |||||||| || || ||||| || |||||||| ||||||||||||||||| |||||||    
T  4661077 tcataaaccagaatcatctatgtgttgtcattacaatatcccatgagggacaccaaatgaatgtggcgaagctgggagagcaactcgatttcgttcatga 4661176  T
Q  288 attcatttagaccttgtcgagaacccaatttacgacgttttatcgcaaca 337  Q
    | || || | ||||||| |||| ||| ||||  | ||||| |||||||||    
T  4661177 actcgttgacaccttgttgagagcccgatttgaggcgtttaatcgcaaca 4661226  T

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Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 146 - 338
Target Start/End: Original strand, 4652751 - 4652943
Alignment:
Q  146 gaaccatagagatgttcacggagagtgccatgttccataaagtcataaacaagaatcatctctgcatcttcattgcaatatccaatgagggaaactaagt 245  Q
    |||||||| ||||  ||||  ||||| || |||| ||| || |||||||| | |||||| ||||  || |||||||||||||| | |||||| || ||||    
T  4652751 gaaccataaagatactcacacagagtaccgtgttgcatgaactcataaaccaaaatcatttctgtgtcatcattgcaatatcccacgagggataccaagt 4652850  T
Q  246 gaatatgacgaagctgagagagcaactcgatttcattcatgaattcatttagaccttgtcgagaacccaatttacgacgttttatcgcaacag 338  Q
    |||| || |||||||| ||||| |||||||| ||||||||||| || ||   ||||||| |||| ||  ||||  | ||||||||||||||||    
T  4652851 gaatgtggcgaagctgggagagtaactcgatctcattcatgaactcgttggcaccttgttgagagccagatttgaggcgttttatcgcaacag 4652943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 309
Target Start/End: Original strand, 4636130 - 4636251
Alignment:
Q  188 tcataaacaagaatcatctctgcatcttcattgcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaactcgatttcattcatga 287  Q
    ||||| || |||||||||||||  |  || ||||||||||| |  ||||| || |||||||| || |||||||| |||||||||||||| || |||||||    
T  4636130 tcatagaccagaatcatctctgtcttgtcgttgcaatatcccacaagggataccaagtgaatgtggcgaagctgggagagcaactcgatctcgttcatga 4636229  T
Q  288 attcatttagaccttgtcgaga 309  Q
    | ||||||  ||||||| ||||    
T  4636230 actcatttgcaccttgttgaga 4636251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 4671945 - 4672013
Alignment:
Q  220 gcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaactcgatttcattcatgaa 288  Q
    ||||||||||| |||||| || |||||||| || ||||| |||||||| ||||||||||| ||||||||    
T  4671945 gcaatatccaacgagggataccaagtgaatgtggcgaagttgagagagtaactcgatttcgttcatgaa 4672013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 336
Target Start/End: Complemental strand, 5479396 - 5479305
Alignment:
Q  245 tgaatatgacgaagctgagagagcaactcgatttcattcatgaattcatttagaccttgtcgagaacccaatttacgacgttttatcgcaac 336  Q
    ||||||||||||||||  |||||||  ||||||||||| ||||| ||||||  ||||||| | ||||||  |||| | |||||||| |||||    
T  5479396 tgaatatgacgaagcttcgagagcatgtcgatttcattgatgaactcattttcaccttgttgtgaacccggtttaagccgttttattgcaac 5479305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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