View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0740_low_84 (Length: 349)
Name: NF0740_low_84
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_low_84 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 14 - 321
Target Start/End: Complemental strand, 28980018 - 28979702
Alignment:
| Q |
14 |
agacatgaagtagccggaataattccatattgaattggcttatctt-------aaa--ggcttagcagcaaccgccacacgcggaaataaaccttaaagg |
104 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||||||| ||| | |||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
28980018 |
agacctgaagtagccagaataattccatattgaattggcttatctttcgttggaaatcgttttagcaacaaccaccacacgcggaaataaaccttaaagg |
28979919 |
T |
|
| Q |
105 |
ctttatgcgaaacaatgtcaaaaaatttggacctgtttaaaaatcgttggaaatcatttttatttcttgttgagcaagatagagtcnnnnnnncatgaat |
204 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
28979918 |
ctttatgcgaaacaatgtcaaaaaatttagacctgtcaaaaaatcgttggaaatcatttttattccttgttgagcaagatagagtctttttttcatgaat |
28979819 |
T |
|
| Q |
205 |
gacgtgctagaatgagctaaaagttgtcagaactcttaagagatcatatggctatgaaatgggtggcatttagcctggataagcaaagttttttcccacc |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
28979818 |
tacgtgctagaatgagctaaaagttgtcagaactgttaagagatcacatggctatgaaatgggtggcatttagcctgggtaagcaaagtttttttccacc |
28979719 |
T |
|
| Q |
305 |
atcggaaagttgaattt |
321 |
Q |
| |
|
|| | |||||||||||| |
|
|
| T |
28979718 |
attgaaaagttgaattt |
28979702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 209 - 267
Target Start/End: Complemental strand, 28975284 - 28975226
Alignment:
| Q |
209 |
tgctagaatgagctaaaagttgtcagaactcttaagagatcatatggctatgaaatggg |
267 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||| ||||||| |||||||||||| |
|
|
| T |
28975284 |
tgctagaatgagctaaaagttgtcagaagtgttaagaagtcatatgactatgaaatggg |
28975226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 264 - 321
Target Start/End: Complemental strand, 37423126 - 37423069
Alignment:
| Q |
264 |
tgggtggcatttagcctggataagcaaagttttttcccaccatcggaaagttgaattt |
321 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
37423126 |
tgggtggcatttagcatgggtaagcaaagttttttcccaccatgggaaagttgaattt |
37423069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 321
Target Start/End: Complemental strand, 6013692 - 6013637
Alignment:
| Q |
265 |
gggtggcatttagcctggataagcaaagttttttcccaccatcggaaagttgaattt |
321 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
6013692 |
gggtgtcatttagcctatgtaagcaaagttttttcccaccat-ggaaagttgaattt |
6013637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 267
Target Start/End: Complemental strand, 31468992 - 31468923
Alignment:
| Q |
198 |
catgaatgacgtgctagaatgagctaaaagttgtcagaactcttaagagatcatatggctatgaaatggg |
267 |
Q |
| |
|
||||||| || ||||| |||||||| ||||||||| ||| | ||||||| ||||||| ||||||||||| |
|
|
| T |
31468992 |
catgaattacatgctataatgagctgaaagttgtcggaagtgttaagaggacatatggttatgaaatggg |
31468923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 266
Target Start/End: Complemental strand, 24386042 - 24385974
Alignment:
| Q |
198 |
catgaatgacgtgctagaatgagctaaaagttgtcagaactcttaagagatcatatggctatgaaatgg |
266 |
Q |
| |
|
||||||| || |||||||||||| | |||||||| |||| | ||||||| | ||||||||||||||||| |
|
|
| T |
24386042 |
catgaattacatgctagaatgagttgaaagttgttagaagtgttaagaggttatatggctatgaaatgg |
24385974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 315
Target Start/End: Original strand, 47799254 - 47799302
Alignment:
| Q |
267 |
gtggcatttagcctggataagcaaagttttttcccaccatcggaaagtt |
315 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||| ||| |||||||| |
|
|
| T |
47799254 |
gtggcatttagcctgggtaagtgaagttttttcccatcatgggaaagtt |
47799302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4423 times since January 2019
Visitors: 4835