View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0740_low_87 (Length: 335)
Name: NF0740_low_87
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_low_87 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 165; Significance: 3e-88; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 92 - 260
Target Start/End: Original strand, 35018688 - 35018856
Alignment:
| Q |
92 |
ccatacgcacaaaaaatcacagaaccatgtttgaattccttaagccatgttaaccatttctcctctaaagtagcttttggtgcctcaggtaacagaggac |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
35018688 |
ccatacgcacaaaaaatcacagaaccatgtttgaattccttaagccatgttaaccatttctcctctaaagtagcttttggtggctcaggtaacagaggac |
35018787 |
T |
|
| Q |
192 |
ctgaaagcagaacaggttttccaaaaacagtttcaagataatcagcatatagaccatcaatctctctgc |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35018788 |
ctgaaagcagaacaggttttccaaaaacagtttcaagataatcagcatatagaccatcaatctctctgc |
35018856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 92 - 260
Target Start/End: Original strand, 35011662 - 35011830
Alignment:
| Q |
92 |
ccatacgcacaaaaaatcacagaaccatgtttgaattccttaagccatgttaaccatttctcctctaaagtagcttttggtgcctcaggtaacagaggac |
191 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||| |||||||||||| ||||| | ||||| |
|
|
| T |
35011662 |
ccatacgcacaaaaaaccacagaaccatgtttgaatccctcaagccatgttaaccatttttcctctaaagtagattttggtgcctcgggtaataaaggac |
35011761 |
T |
|
| Q |
192 |
ctgaaagcagaacaggttttccaaaaacagtttcaagataatcagcatatagaccatcaatctctctgc |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
35011762 |
ctgaaagcagaacaggttttccaaaaacagtttcaagataatcagcatatagtccatcaatttctctgc |
35011830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 92 - 260
Target Start/End: Original strand, 34998177 - 34998343
Alignment:
| Q |
92 |
ccatacgcacaaaaaatcacagaaccatgtttgaattccttaagccatgttaaccatttctcctctaaagtagcttttggtgcctcaggtaacagaggac |
191 |
Q |
| |
|
||||| |||||| ||| ||| |||||||||||||| ||||||||| ||||||||||| ||||||||||||| |||||||||||||||||| | ||||| |
|
|
| T |
34998177 |
ccatatgcacaataaaccacgaaaccatgtttgaatcccttaagcc--gttaaccatttttcctctaaagtagattttggtgcctcaggtaataaaggac |
34998274 |
T |
|
| Q |
192 |
ctgaaagcagaacaggttttccaaaaacagtttcaagataatcagcatatagaccatcaatctctctgc |
260 |
Q |
| |
|
||||||||||||||||||| || |||||||||| ||||| |||||||| | ||||||||| ||||||| |
|
|
| T |
34998275 |
ctgaaagcagaacaggtttacccaaaacagtttgtagatattcagcatacaaaccatcaatttctctgc |
34998343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 92 - 251
Target Start/End: Complemental strand, 35033972 - 35033813
Alignment:
| Q |
92 |
ccatacgcacaaaaaatcacagaaccatgtttgaattccttaagccatgttaaccatttctcctctaaagtagcttttggtgcctcaggtaacagaggac |
191 |
Q |
| |
|
||||| |||||||||| ||||||||||| || ||| |||||||||||| | |||||| ||||||| || | |||| || ||||||||||| ||||| |
|
|
| T |
35033972 |
ccatatgcacaaaaaaccacagaaccattttcaaatcccttaagccatgaaatccatttttcctctagtgttgtatttgttggctcaggtaacacaggac |
35033873 |
T |
|
| Q |
192 |
ctgaaagcagaacaggttttccaaaaacagtttcaagataatcagcatatagaccatcaa |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||| |
|
|
| T |
35033872 |
ctgaaagcagaacaggttttccaaaaacagtttcaatataatcagcatatggtccatcaa |
35033813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 92 - 241
Target Start/End: Complemental strand, 35026963 - 35026814
Alignment:
| Q |
92 |
ccatacgcacaaaaaatcacagaaccatgtttgaattccttaagccatgttaaccatttctcctctaaagtagcttttggtgcctcaggtaacagaggac |
191 |
Q |
| |
|
||||| |||||||| | |||||||||| |||||||| |||||||||||| | |||||| || |||||||| | |||||||| |||||||||| ||||| |
|
|
| T |
35026963 |
ccatatgcacaaaacaccacagaaccaggtttgaatcccttaagccatgattcccatttttcatctaaagttgtttttggtgtttcaggtaacaaaggac |
35026864 |
T |
|
| Q |
192 |
ctgaaagcagaacaggttttccaaaaacagtttcaagataatcagcatat |
241 |
Q |
| |
|
||||||| ||| |||||||||| ||| | || ||||| | ||||||||| |
|
|
| T |
35026863 |
ctgaaagtagataaggttttccataaaaatttccaagaaattcagcatat |
35026814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4904 times since January 2019
Visitors: 4840