View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0740_low_9 (Length: 568)
Name: NF0740_low_9
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Complemental strand, 37409015 - 37408534
Alignment:
| Q |
1 |
ttcttctcatcatgggacttcaccgatgatccctgcaacttcgccggcgtttactgcgccaccgataaagtcattgcactcagtctaggagaatctagag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37409015 |
ttcttctcatcatgggacttcaccgatgatccctgcaacttcgccggcgtttactgcgccaccgataaagtcattgcactcagtctaggagaatctagag |
37408916 |
T |
|
| Q |
101 |
ccggttcacctggcctcacaggaaaaatcgacatcgccatcggaaaactctcgtctctcgtagatttaaccgtttctccggggagaatttacggtcatct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37408915 |
ccggttcacctggcctcacaggaaaaatcgacaccgccatcggaaaactctcgtctctcgtagatttaaccgtttctccggggagaatttacggtcatct |
37408816 |
T |
|
| Q |
201 |
ccctcagtccatttcacagttgaagaatctcaggtttctcggtattagtcggaatttcatctccggtgagattccggcagggcttggtcaacttcgtaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37408815 |
ccctcagtccatttcacagttgaagaatctcaggtttctcggtattagtcggaatttcatctccggtgagattccggcagggcttggtcaacttcgtaat |
37408716 |
T |
|
| Q |
301 |
gtccgaactattgatctaagttacaatcagctcgccggaactattcctccgtcaatcggaaaattgccggagttaaagaaccttattctccgtcataacc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37408715 |
gtccgaactattgatctaagttacaatcagctcgccggaactattcctccgtcaatcggaaaattgccggagttaaagaaccttattctccgtcataacc |
37408616 |
T |
|
| Q |
401 |
gtctcactggttcagttccatcattcgcatcggctcgaaacctaaacaggctcgatctaaagcataacacactcacaggttc |
482 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
37408615 |
gtctcgctggttcagttccatcattcgcatcggctcgaaacctaaaccggctcgatctaaagcataacacactcaccggttc |
37408534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 177 - 351
Target Start/End: Complemental strand, 40085295 - 40085121
Alignment:
| Q |
177 |
tccggggagaatttacggtcatctccctcagtccatttcacagttgaagaatctcaggtttctcggtattagtcggaatttcatctccggtgagattccg |
276 |
Q |
| |
|
|||||| ||||| || |||| ||| ||||| |||||||| |||||||||||||||||||| ||| ||| | || ||||||||||||||||||||| |
|
|
| T |
40085295 |
tccgggaagaatatatggtcctcttcctcaaaccatttcaagcttgaagaatctcaggtttcttggtgttaacagaaacttcatctccggtgagattccg |
40085196 |
T |
|
| Q |
277 |
gcagggcttggtcaacttcgtaatgtccgaactattgatctaagttacaatcagctcgccggaactattcctccg |
351 |
Q |
| |
|
|| | | | ||| | | || | | | |||||||||||||| |||||||||||||| |||||| ||||||||| |
|
|
| T |
40085195 |
gcggagttaggtgagttacgcagtcttcgaactattgatcttagttacaatcagctaaccggaaaaattcctccg |
40085121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 374
Target Start/End: Original strand, 5643842 - 5643982
Alignment:
| Q |
234 |
gtttctcggtattagtcggaatttcatctccggtgagattccggcagggcttggtcaacttcgtaatgtccgaactattgatctaagttacaatcagctc |
333 |
Q |
| |
|
||||||||| || || ||||||||||||||| ||||||||||||||| || |||| ||| | ||| || |||| || || ||||||||| | || |
|
|
| T |
5643842 |
gtttctcggcatcagctggaatttcatctccgacgagattccggcagggattagtcagctttgcaatctcagaacaatcaatttaagttacagaaacctt |
5643941 |
T |
|
| Q |
334 |
gccggaactattcctccgtcaatcggaaaattgccggagtt |
374 |
Q |
| |
|
| | || | ||||||||||||||||||||||||||||||| |
|
|
| T |
5643942 |
tcggaaattgttcctccgtcaatcggaaaattgccggagtt |
5643982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 374
Target Start/End: Complemental strand, 25092339 - 25092199
Alignment:
| Q |
234 |
gtttctcggtattagtcggaatttcatctccggtgagattccggcagggcttggtcaacttcgtaatgtccgaactattgatctaagttacaatcagctc |
333 |
Q |
| |
|
||||||||| || || ||||||||||||||| ||||||||||||||| || |||| ||| | ||| || |||| || || ||||||||| | || |
|
|
| T |
25092339 |
gtttctcggcatcagctggaatttcatctccgacgagattccggcagggattagtcagctttgcaatctcagaacaatcaatttaagttacagaaacctt |
25092240 |
T |
|
| Q |
334 |
gccggaactattcctccgtcaatcggaaaattgccggagtt |
374 |
Q |
| |
|
| | || | ||||||||||||||||||||||||||||||| |
|
|
| T |
25092239 |
tcggaaattgttcctccgtcaatcggaaaattgccggagtt |
25092199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3141 times since January 2019
Visitors: 4805