View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0740_low_91 (Length: 333)
Name: NF0740_low_91
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_low_91 |
 | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 165; Significance: 3e-88; HSPs: 20)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 93 - 321
Target Start/End: Original strand, 9852048 - 9852276
Alignment:
| Q |
93 |
aagtggtctacccacttcattgcaatcacttcatattagaaaatgtgagaatttatccttcctacctcctgaaacgtggagcaactacacatcacttgtg |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
9852048 |
aagtggtctacccacttcattgcaatcacttgatattgaaaattgtgagaatttatccttcctacctcctgaaacatggagcaactacacatcacttgtg |
9852147 |
T |
|
| Q |
193 |
agtctttggttctatcgtagctgtgattcacttacatcctttccactcgatggtttccctgcgctccaaacacttaccatacataattgtaggagtctgg |
292 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||| || |||| || ||||||| |
|
|
| T |
9852148 |
agtcttcggttctatcgtagctgtgattcacttaaatcctttccactcgatggtttccctgtgctccaaacacttgacattgatgattggagaagtctgg |
9852247 |
T |
|
| Q |
293 |
attccatttatatttcagaaaggtcttca |
321 |
Q |
| |
|
||||||||||||||| ||||||||||||| |
|
|
| T |
9852248 |
attccatttatattttagaaaggtcttca |
9852276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 93 - 321
Target Start/End: Original strand, 10129234 - 10129462
Alignment:
| Q |
93 |
aagtggtctacccacttcattgcaatcacttcatattagaaaatgtgagaatttatccttcctacctcctgaaacgtggagcaactacacatcacttgtg |
192 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10129234 |
aagtggactacccacttcattgcaatcacttcatattgaaaaatgtgagaatttatccttcctacctcctgaaacgtggagcaattacacatcacttgtg |
10129333 |
T |
|
| Q |
193 |
agtctttggttctatcgtagctgtgattcacttacatcctttccactcgatggtttccctgcgctccaaacacttaccatacataattgtaggagtctgg |
292 |
Q |
| |
|
||| || || |||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10129334 |
agtattgatttacggagtagttgtgatgcacttacatcctttccacttgatggtttccctgcgctccaaacacttaccatacataattgtaggagtctgg |
10129433 |
T |
|
| Q |
293 |
attccatttatatttcagaaaggtcttca |
321 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
10129434 |
attccatttatatttcagaaaggtcttca |
10129462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 93 - 321
Target Start/End: Complemental strand, 10361561 - 10361333
Alignment:
| Q |
93 |
aagtggtctacccacttcattgcaatcacttcatattagaaaatgtgagaatttatccttcctacctcctgaaacgtggagcaactacacatcacttgtg |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10361561 |
aagtggtctacccacttcattgcaatcacttcatattgaaaattgtgagaatttatccttcctacctcctgaaacgtggagcaattacacatcacttgtg |
10361462 |
T |
|
| Q |
193 |
agtctttggttctatcgtagctgtgattcacttacatcctttccactcgatggtttccctgcgctccaaacacttaccatacataattgtaggagtctgg |
292 |
Q |
| |
|
| ||| || ||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||| |
|
|
| T |
10361461 |
actctacatttagatcatagctgtggttcacttacatcctttccactcgatggtttccctgcgctccgaacacttaccatacgtgattgtaggagtctgg |
10361362 |
T |
|
| Q |
293 |
attccatttatatttcagaaaggtcttca |
321 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
10361361 |
attccatttatatttcagaaaggtcttca |
10361333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 93 - 321
Target Start/End: Original strand, 10519794 - 10520022
Alignment:
| Q |
93 |
aagtggtctacccacttcattgcaatcacttcatattagaaaatgtgagaatttatccttcctacctcctgaaacgtggagcaactacacatcacttgtg |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
10519794 |
aagtggtctacccacttcattgcaatcacttaatattcaatgttgtgagaatttatccttccttcctcctgaaacgtggatcaattacacatcacttgtg |
10519893 |
T |
|
| Q |
193 |
agtctttggttctatcgtagctgtgattcacttacatcctttccactcgatggtttccctgcgctccaaacacttaccatacataattgtaggagtctgg |
292 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || |||||||||| |
|
|
| T |
10519894 |
agtcttaagttctatcgtagctgtgatacacttacatcctttccactcgatggtttccctgcgctccaaacacttaccatatgtgagtgcaggagtctgg |
10519993 |
T |
|
| Q |
293 |
attccatttatatttcagaaaggtcttca |
321 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
10519994 |
attccatttatatttcagaaaggtcttca |
10520022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 93 - 321
Target Start/End: Original strand, 9841167 - 9841395
Alignment:
| Q |
93 |
aagtggtctacccacttcattgcaatcacttcatattagaaaatgtgagaatttatccttcctacctcctgaaacgtggagcaactacacatcacttgtg |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9841167 |
aagtggtctacccacttcattgcaatcacttcatattcgtagttgtgagaatttatccttcctacctcctgaaacgtggagcaattacacatcacttgtg |
9841266 |
T |
|
| Q |
193 |
agtctttggttctatcgtagctgtgattcacttacatcctttccactcgatggtttccctgcgctccaaacacttaccatacataattgtaggagtctgg |
292 |
Q |
| |
|
|||||| ||| | | ||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||| | ||||||||||||| | |
|
|
| T |
9841267 |
agtcttcagttatggtggagctgtgatacacttacatccttcccacttgatggtttccctgcgctccaaacacttaccatacttgattgtaggagtctag |
9841366 |
T |
|
| Q |
293 |
attccatttatatttcagaaaggtcttca |
321 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
9841367 |
attccatttatatttcagaaaggtcttca |
9841395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 93 - 321
Target Start/End: Original strand, 10263010 - 10263238
Alignment:
| Q |
93 |
aagtggtctacccacttcattgcaatcacttcatattagaaaatgtgagaatttatccttcctacctcctgaaacgtggagcaactacacatcacttgtg |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||| ||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10263010 |
aagtggtctacccacttcattgcaatcacttgaaattgtaaattgtgagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtg |
10263109 |
T |
|
| Q |
193 |
agtctttggttctatcgtagctgtgattcacttacatcctttccactcgatggtttccctgcgctccaaacacttaccatacataattgtaggagtctgg |
292 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||| ||||| ||||||| |
|
|
| T |
10263110 |
agtcttgagttaaatcgtagctgtgattcacttacatcctttccactcgatggtttccctgccctccaaacacttgacatatataagtgtagaagtctgg |
10263209 |
T |
|
| Q |
293 |
attccatttatatttcagaaaggtcttca |
321 |
Q |
| |
|
||||||||||||||| ||||||||||||| |
|
|
| T |
10263210 |
attccatttatattttagaaaggtcttca |
10263238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 93 - 267
Target Start/End: Original strand, 10582920 - 10583094
Alignment:
| Q |
93 |
aagtggtctacccacttcattgcaatcacttcatattagaaaatgtgagaatttatccttcctacctcctgaaacgtggagcaactacacatcacttgtg |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10582920 |
aagtggtctacccacttcattgcaatcacttcatatcgaaaattgtgagaatttatccttcctacctcctgaaacgtggagcaactacacatcacttgtg |
10583019 |
T |
|
| Q |
193 |
agtctttggttctatcgtagctgtgattcacttacatcctttccactcgatggtttccctgcgctccaaacactt |
267 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
10583020 |
agtctttagttctatcgtagctgtgattcacttacatcctttccacttgatggtttccctgcgctccgaacactt |
10583094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 93 - 321
Target Start/End: Original strand, 10034312 - 10034540
Alignment:
| Q |
93 |
aagtggtctacccacttcattgcaatcacttcatattagaaaatgtgagaatttatccttcctacctcctgaaacgtggagcaactacacatcacttgtg |
192 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10034312 |
aagtggactacccacttcattgcaatcacttcatattgtaaaatgtgagaatttatccttcctacctcctgaaacgtggagcaattacacatcacttgtg |
10034411 |
T |
|
| Q |
193 |
agtctttggttctatcgtagctgtgattcacttacatcctttccactcgatggtttccctgcgctccaaacacttaccatacataattgtaggagtctgg |
292 |
Q |
| |
|
||||||| || || ||| |||||| ||||||||||||||||||| ||||||||||||| |||||||||||| ||| |||||||||||||||| |
|
|
| T |
10034412 |
agtctttatttaattcatagttgtgatgcacttacatcctttccacttgatggtttccctgtcctccaaacacttcagatatggaattgtaggagtctgg |
10034511 |
T |
|
| Q |
293 |
attccatttatatttcagaaaggtcttca |
321 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
10034512 |
tttccatttatatttcagaaaggtcttca |
10034540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 93 - 321
Target Start/End: Complemental strand, 10431801 - 10431573
Alignment:
| Q |
93 |
aagtggtctacccacttcattgcaatcacttcatattagaaaatgtgagaatttatccttcctacctcctgaaacgtggagcaactacacatcacttgtg |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10431801 |
aagtggtctacccacttcattgcaatcacttgaaattgaaaaatgtgagaatttatccttcctacctcctgaaacgtggagcaattacacatcacttgtc |
10431702 |
T |
|
| Q |
193 |
agtctttggttctatcgtagctgtgattcacttacatcctttccactcgatggtttccctgcgctccaaacacttaccatacataattgtaggagtctgg |
292 |
Q |
| |
|
||||||| || | | || ||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||| |||||| || ||||||| |
|
|
| T |
10431701 |
agtctttatttatggagcagttgtgattcacttacatcctttccactcgatggtttccctgccctccaattacttgacatatttaattgcagaagtctgg |
10431602 |
T |
|
| Q |
293 |
attccatttatatttcagaaaggtcttca |
321 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
10431601 |
attccatttatatttcagaaaggtcttca |
10431573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 93 - 314
Target Start/End: Complemental strand, 10373602 - 10373381
Alignment:
| Q |
93 |
aagtggtctacccacttcattgcaatcacttcatattagaaaatgtgagaatttatccttcctacctcctgaaacgtggagcaactacacatcacttgtg |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||| | |||||||||||||||||||| |||| ||||| ||||||||| ||||||||||||||| |
|
|
| T |
10373602 |
aagtggtctacccacttcattgcaatcacttgaaattagatactgtgagaatttatccttccttcctcttgaaatgtggagcaattacacatcacttgtg |
10373503 |
T |
|
| Q |
193 |
agtctttggttctatcgtagctgtgattcacttacatcctttccactcgatggtttccctgcgctccaaacacttaccatacataattgtaggagtctgg |
292 |
Q |
| |
|
| |||| || |||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||| |||| |||||||||| ||||| |
|
|
| T |
10373502 |
tggctttatttatatcgtagctgtgattcacttatatcctttccacttgatggtttccctgtcctccaaacacttatgatactgaattgtaggaatctgg |
10373403 |
T |
|
| Q |
293 |
attccatttatatttcagaaag |
314 |
Q |
| |
|
||||||||| |||||||||||| |
|
|
| T |
10373402 |
attccatttgtatttcagaaag |
10373381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 93 - 313
Target Start/End: Complemental strand, 11779742 - 11779522
Alignment:
| Q |
93 |
aagtggtctacccacttcattgcaatcacttcatattagaaaatgtgagaatttatccttcctacctcctgaaacgtggagcaactacacatcacttgtg |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | | |||||||| |||||||| |||||| |||||||||||||||| ||||| ||||||||| |
|
|
| T |
11779742 |
aagtggtctacccacttcattgcaatcacttcatattaaagattgtgagaacttatcctttctaccttctgaaacgtggagcaattacacttcacttgtg |
11779643 |
T |
|
| Q |
193 |
agtctttggttctatcgtagctgtgattcacttacatcctttccactcgatggtttccctgcgctccaaacacttaccatacataattgtaggagtctgg |
292 |
Q |
| |
|
||||||| || | |||| |||||| ||||||||||||| ||||| ||||||||||||| ||||||||||||| | || | ||||||||||||||| |
|
|
| T |
11779642 |
agtctttatttatggagtagttgtgatgcacttacatccttcccacttgatggtttccctgtgctccaaacacttgacttaagtgattgtaggagtctgg |
11779543 |
T |
|
| Q |
293 |
attccatttatatttcagaaa |
313 |
Q |
| |
|
||||||||||||||| ||||| |
|
|
| T |
11779542 |
attccatttatattttagaaa |
11779522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 93 - 314
Target Start/End: Original strand, 10665775 - 10665996
Alignment:
| Q |
93 |
aagtggtctacccacttcattgcaatcacttcatattagaaaatgtgagaatttatccttcctacctcctgaaacgtggagcaactacacatcacttgtg |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10665775 |
aagtggtctacccacttcattgcaatcacttaatattttgtggtgtgagaatttatccttcctacctcctgaaacgtggagcaattacacatcacttgtg |
10665874 |
T |
|
| Q |
193 |
agtctttggttctatcgtagctgtgattcacttacatcctttccactcgatggtttccctgcgctccaaacacttaccatacataattgtaggagtctgg |
292 |
Q |
| |
|
|||| || | || || |||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
10665875 |
cgtctagatttatgtcaaagttgtgatgcacttacatcctttccacttgatggtttccctgcgctccaaacactttggatacagaattgtaggagtctgg |
10665974 |
T |
|
| Q |
293 |
attccatttatatttcagaaag |
314 |
Q |
| |
|
|||||||| ||||| |||||| |
|
|
| T |
10665975 |
tttccatttgtattttagaaag |
10665996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 93 - 321
Target Start/End: Original strand, 10091103 - 10091331
Alignment:
| Q |
93 |
aagtggtctacccacttcattgcaatcacttcatattagaaaatgtgagaatttatccttcctacctcctgaaacgtggagcaactacacatcacttgtg |
192 |
Q |
| |
|
|||||||||||||||||||||||||||| || | ||| | ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10091103 |
aagtggtctacccacttcattgcaatcaattgaaattgaattttgtttgaatttatccttcctacctcctgaaacgtggagcaattacacatcacttgtg |
10091202 |
T |
|
| Q |
193 |
agtctttggttctatcgtagctgtgattcacttacatcctttccactcgatggtttccctgcgctccaaacacttaccatacataattgtaggagtctgg |
292 |
Q |
| |
|
|| |||| || || |||||||||| ||||||||||||||||||| |||||||||||||||||| || ||||||||||| || |||||| ||||||| |
|
|
| T |
10091203 |
agactttatttaagtcatagctgtgatgcacttacatcctttccacttgatggtttccctgcgctcaaatcacttaccatagatggttgtagtagtctgg |
10091302 |
T |
|
| Q |
293 |
attccatttatatttcagaaaggtcttca |
321 |
Q |
| |
|
|||||||| || ||| ||||| ||||||| |
|
|
| T |
10091303 |
attccattaatgttttagaaatgtcttca |
10091331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 93 - 321
Target Start/End: Original strand, 10197985 - 10198213
Alignment:
| Q |
93 |
aagtggtctacccacttcattgcaatcacttcatattagaaaatgtgagaatttatccttcctacctcctgaaacgtggagcaactacacatcacttgtg |
192 |
Q |
| |
|
|||||||||||||||||||||||||||| || | ||| | ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10197985 |
aagtggtctacccacttcattgcaatcaattgaaattgaattttgtttgaatttatccttcctacctcctgaaacgtggagcaattacacatcacttgtg |
10198084 |
T |
|
| Q |
193 |
agtctttggttctatcgtagctgtgattcacttacatcctttccactcgatggtttccctgcgctccaaacacttaccatacataattgtaggagtctgg |
292 |
Q |
| |
|
|| |||| || || |||||||||| ||||||||||||||||||| |||||||||||||||||| || ||||||||||| || |||||| ||||||| |
|
|
| T |
10198085 |
agactttatttaagtcatagctgtgatgcacttacatcctttccacttgatggtttccctgcgctcaaatcacttaccatagatggttgtagtagtctgg |
10198184 |
T |
|
| Q |
293 |
attccatttatatttcagaaaggtcttca |
321 |
Q |
| |
|
|||||||| || ||| ||||| ||||||| |
|
|
| T |
10198185 |
attccattaatgttttagaaatgtcttca |
10198213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 93 - 321
Target Start/End: Original strand, 11771543 - 11771771
Alignment:
| Q |
93 |
aagtggtctacccacttcattgcaatcacttcatattagaaaatgtgagaatttatccttcctacctcctgaaacgtggagcaactacacatcacttgtg |
192 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| | | |||||||| |||||||| |||||| |||||||||||||| | ||||| ||||||||| |
|
|
| T |
11771543 |
aagtggtctacccacttcattgcaaatacttcatattaaagattgtgagaacttatcctttctaccttctgaaacgtggagctattacacttcacttgtg |
11771642 |
T |
|
| Q |
193 |
agtctttggttctatcgtagctgtgattcacttacatcctttccactcgatggtttccctgcgctccaaacacttaccatacataattgtaggagtctgg |
292 |
Q |
| |
|
||||||| || | |||| |||||| ||||||||||||||||||| |||||||||||||||||| || ||||||||||| || |||||| ||||||| |
|
|
| T |
11771643 |
agtctttatttatggagtagttgtgatgcacttacatcctttccacttgatggtttccctgcgctcaaatcacttaccatagatggttgtagtagtctgg |
11771742 |
T |
|
| Q |
293 |
attccatttatatttcagaaaggtcttca |
321 |
Q |
| |
|
|||||||| || ||| ||||| ||||||| |
|
|
| T |
11771743 |
attccattaatgttttagaaatgtcttca |
11771771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 96 - 301
Target Start/End: Original strand, 10502894 - 10503099
Alignment:
| Q |
96 |
tggtctacccacttcattgcaatcacttcatattagaaaatgtgagaatttatccttcctacctcctgaaacgtggagcaactacacatcacttgtgagt |
195 |
Q |
| |
|
||||||||||||||| ||||| |||||| ||||| || ||||||||||||||||| || ||| |||||||||||||||| ||||||| ||||||||| |
|
|
| T |
10502894 |
tggtctacccacttctttgcagtcacttagtattaaaaggtgtgagaatttatcctttcttcctgctgaaacgtggagcaattacacattgcttgtgagt |
10502993 |
T |
|
| Q |
196 |
ctttggttctatcgtagctgtgattcacttacatcctttccactcgatggtttccctgcgctccaaacacttaccatacataattgtaggagtctggatt |
295 |
Q |
| |
|
||| || | ||||||||||| ||| |||||||||||||| |||||||||||||| ||||||| ||||| ||| ||| ||||||| | |||||| |
|
|
| T |
10502994 |
cttgatttatggagtagctgtgatggactaacatcctttccacttgatggtttccctgcactccaaagacttaacattagtaactgtaggaatttggatt |
10503093 |
T |
|
| Q |
296 |
ccattt |
301 |
Q |
| |
|
|||||| |
|
|
| T |
10503094 |
ccattt |
10503099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 93 - 314
Target Start/End: Complemental strand, 13853221 - 13853000
Alignment:
| Q |
93 |
aagtggtctacccacttcattgcaatcacttcatattagaaaatgtgagaatttatccttcctacctcctgaaacgtggagcaactacacatcacttgtg |
192 |
Q |
| |
|
||||||||| || ||| |||||||||||||| | || |||||||||||||||||| ||||| ||||||||||| |||||||| |||||||| |||| | |
|
|
| T |
13853221 |
aagtggtctgccaactccattgcaatcacttgaaatagaaaaatgtgagaatttatcattccttcctcctgaaacatggagcaattacacatcgcttgcg |
13853122 |
T |
|
| Q |
193 |
agtctttggttctatcgtagctgtgattcacttacatcctttccactcgatggtttccctgcgctccaaacacttaccatacataattgtaggagtctgg |
292 |
Q |
| |
|
|||||| || ||||||||||| ||||||||||||| | ||| |||||||||||||| ||||||| |||| ||| | | ||||||| ||||| |
|
|
| T |
13853121 |
agtcttactttacggagtagctgtgatgcacttacatccttccaacttgatggtttccctgcactccaaagacttcggataagtgagtgtaggaatctgg |
13853022 |
T |
|
| Q |
293 |
attccatttatatttcagaaag |
314 |
Q |
| |
|
|||||||| |||||| |||||| |
|
|
| T |
13853021 |
attccattaatattttagaaag |
13853000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 96 - 314
Target Start/End: Original strand, 10530973 - 10531191
Alignment:
| Q |
96 |
tggtctacccacttcattgcaatcacttcatattagaaaatgtgagaatttatccttcctacctcctgaaacgtggagcaactacacatcacttgtgagt |
195 |
Q |
| |
|
||||||||||||||||||||| |||||| |||| || |||||||| ||| | ||| | ||||||||||||||||||| |||||||| |||| |||| |
|
|
| T |
10530973 |
tggtctacccacttcattgcagtcactttgtattgataattgtgagaagttagcattcatgcctcctgaaacgtggagcagatacacatcgcttgagagt |
10531072 |
T |
|
| Q |
196 |
ctttggttctatcgtagctgtgattcacttacatcctttccactcgatggtttccctgcgctccaaacacttaccatacataattgtaggagtctggatt |
295 |
Q |
| |
|
||| || | ||||||||||| ||||||||||||| | ||| |||||||||||||| |||| || |||| ||| | |||||||||| |||||| |
|
|
| T |
10531073 |
cttattttatggagtagctgtgatgcacttacatccttccaacttgatggtttccctgcactccgaatactttacatttgtttttgtaggagtatggatt |
10531172 |
T |
|
| Q |
296 |
ccatttatatttcagaaag |
314 |
Q |
| |
|
| ||| |||||||||||| |
|
|
| T |
10531173 |
cggtttttatttcagaaag |
10531191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 96 - 188
Target Start/End: Complemental strand, 11244280 - 11244188
Alignment:
| Q |
96 |
tggtctacccacttcattgcaatcacttcatattagaaaatgtgagaatttatccttcctacctcctgaaacgtggagcaactacacatcact |
188 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||| | || ||||| | ||| | |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11244280 |
tggtctacccacttctttgcaaacacttcatattcgcaattgtgacagcttaacattcctacctcctgaaacgtggagcaattacacatcact |
11244188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 314
Target Start/End: Original strand, 10679812 - 10679990
Alignment:
| Q |
136 |
tgtgagaatttatccttcctacctcctgaaacgtggagcaactacacatcacttgtgagtctttggttctatcgtagctgtgattcacttacatcctttc |
235 |
Q |
| |
|
|||||||| ||| | ||| | ||||||||||||||||||| || ||||| |||||||||||| || | ||||||||||| ||||||||||||| | |
|
|
| T |
10679812 |
tgtgagaagttagcattcatgcctcctgaaacgtggagcagatatacatcgcttgtgagtcttattttatggagtagctgtgatgcacttacatccttcc |
10679911 |
T |
|
| Q |
236 |
cactcgatggtttccctgcgctccaaacacttaccatacataattgtaggagtctggattccatttatatttcagaaag |
314 |
Q |
| |
|
||| |||||||||||||| |||| || |||| ||| | |||||||||| ||||||| ||| |||||||||||| |
|
|
| T |
10679912 |
aacttgatggtttccctgcactccgaatactttacatttgtttttgtaggagtatggattcagtttttatttcagaaag |
10679990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 93 - 314
Target Start/End: Complemental strand, 55362 - 55141
Alignment:
| Q |
93 |
aagtggtctacccacttcattgcaatcacttcatattagaaaatgtgagaatttatccttcctacctcctgaaacgtggagcaactacacatcacttgtg |
192 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
55362 |
aagtggactacccacttcattgcaatcacttcatattgaaaaatgtgagaatttatccttcctacctcctgaaacgtggagcaattacacatcacttgtc |
55263 |
T |
|
| Q |
193 |
agtctttggttctatcgtagctgtgattcacttacatcctttccactcgatggtttccctgcgctccaaacacttaccatacataattgtaggagtctgg |
292 |
Q |
| |
|
|||||| | | ||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||| || ||||||||||||| |
|
|
| T |
55262 |
agtcttaatatatcatatagttgtgattcacttacatcctttccacttgatggtttccctgccctccaaacacttgacataagtagatgtaggagtctgg |
55163 |
T |
|
| Q |
293 |
attccatttatatttcagaaag |
314 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
55162 |
tttccatttgtatttcagaaag |
55141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 97 - 314
Target Start/End: Original strand, 11487342 - 11487559
Alignment:
| Q |
97 |
ggtctacccacttcattgcaatcacttcatattagaaaatgtgagaatttatccttcctacctcctgaaacgtggagcaactacacatcacttgtgagtc |
196 |
Q |
| |
|
|||||||| |||||||||||||||||| | || | |||||||||||||| ||||| |||||||||||||||||||| |||| || |||||| | |
|
|
| T |
11487342 |
ggtctacctacttcattgcaatcactttgtgttcatagttgtgagaatttatcattccttcctcctgaaacgtggagcaattacaagtctcttgtgtcgc |
11487441 |
T |
|
| Q |
197 |
tttggttctatcgtagctgtgattcacttacatcctttccactcgatggtttccctgcgctccaaacacttaccatacataattgtaggagtctggattc |
296 |
Q |
| |
|
|| ||| | | ||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||| | || || |||||||| |||||||||| |
|
|
| T |
11487442 |
ttgagttatttagtagctgtgatgcacttacatcctttccacttgatggtttccctgcgctccaaagactaaaactatatgattgtaggtgtctggattc |
11487541 |
T |
|
| Q |
297 |
catttatatttcagaaag |
314 |
Q |
| |
|
||||| ||||| |||||| |
|
|
| T |
11487542 |
catttttattttagaaag |
11487559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 209 - 301
Target Start/End: Complemental strand, 44955303 - 44955211
Alignment:
| Q |
209 |
gtagctgtgattcacttacatcctttccactcgatggtttccctgcgctccaaacacttaccatacataattgtaggagtctggattccattt |
301 |
Q |
| |
|
||||||||||| |||||| ||| || ||||| ||||||||||||| |||||||| ||||| ||| | |||||||||||||||||| |||| |
|
|
| T |
44955303 |
gtagctgtgatgcacttaaatcattcccacttgatggtttccctgtgctccaaagacttaacattagtggttgtaggagtctggattcaattt |
44955211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 93 - 313
Target Start/End: Original strand, 26909197 - 26909417
Alignment:
| Q |
93 |
aagtggtctacccacttcattgcaatcacttcatattagaaaatgtgagaatttatccttcctacctcctgaaacgtggagcaactacacatcacttgtg |
192 |
Q |
| |
|
|||||||||||||||||||||||||||| || | ||| | ||| |||||||||||||||||||| |||||| |||||||| ||||||||||||||| |
|
|
| T |
26909197 |
aagtggtctacccacttcattgcaatcaattgaaattgaattttgtttgaatttatccttcctacctcttgaaacctggagcaattacacatcacttgtg |
26909296 |
T |
|
| Q |
193 |
agtctttggttctatcgtagctgtgattcacttacatcctttccactcgatggtttccctgcgctccaaacacttaccatacataattgtaggagtctgg |
292 |
Q |
| |
|
| || ||| |||| |||||||||| ||||| ||| ||||| || |||||||||||||| ||||||| |||| || | ||||||||||| ||| |
|
|
| T |
26909297 |
aacattgagttatatcatagctgtgatgcacttgaatcatttccgcttgatggtttccctgctctccaaagtcttaaaatttacgattgtaggagtgtgg |
26909396 |
T |
|
| Q |
293 |
attccatttatatttcagaaa |
313 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
26909397 |
attccatttatatttcagaaa |
26909417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 105 - 314
Target Start/End: Complemental strand, 17850674 - 17850465
Alignment:
| Q |
105 |
cacttcattgcaatcacttcatattagaaaatgtgagaatttatccttcctacctcctgaaacgtggagcaactacacatcacttgtgagtctttggttc |
204 |
Q |
| |
|
|||||||||||| |||||||||||||| | ||| |||||||||||||| | |||||||||||||||| ||| ||||||||||||| ||||||| ||| |
|
|
| T |
17850674 |
cacttcattgcagtcacttcatattagtatgtgtaagaatttatccttcatgcctcctgaaacgtggaacaattacacatcacttgcgagtcttgagtta |
17850575 |
T |
|
| Q |
205 |
tatcgtagctgtgattcacttacatcctttccactcgatggtttccctgcgctccaaacacttaccatacataattgtaggagtctggattccatttata |
304 |
Q |
| |
|
| | ||||| ||| ||||||| || || || | |||||||| ||||||||| ||| |||| ||| ||| ||||| || ||| ||||| |||| || |
|
|
| T |
17850574 |
tggagcagctgcgatgcacttacctctttctcattggatggttttcctgcgctcgaaagacttcacatttatagttgtaagaatctagattcaattttta |
17850475 |
T |
|
| Q |
305 |
tttcagaaag |
314 |
Q |
| |
|
|||||||||| |
|
|
| T |
17850474 |
tttcagaaag |
17850465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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