View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0740_low_95 (Length: 325)

Name: NF0740_low_95
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0740_low_95
NF0740_low_95
[»] chr5 (2 HSPs)
chr5 (166-276)||(37411256-37411366)
chr5 (15-125)||(37411256-37411366)
[»] chr6 (2 HSPs)
chr6 (169-279)||(21795700-21795812)
chr6 (18-128)||(21795700-21795812)
[»] chr1 (4 HSPs)
chr1 (18-128)||(19074107-19074219)
chr1 (169-279)||(19074107-19074219)
chr1 (18-128)||(19121997-19122109)
chr1 (169-279)||(19121997-19122109)
[»] chr8 (2 HSPs)
chr8 (17-104)||(36640440-36640527)
chr8 (168-255)||(36640440-36640527)


Alignment Details
Target: chr5 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 166 - 276
Target Start/End: Complemental strand, 37411366 - 37411256
Alignment:
Q  166 agctgttgctgcaaaaattagtacacaaacacaaaataatttgttagaaaaattattaggctgagttgcggattagttcgctttctttaaaacgatttgc 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||    
T  37411366 agctgttgctgcaaaaattagtacacaaacacaaaataatttgttagaaaaattattaggctgagttgcggattagttcgctttttttaagacgattcgc 37411267  T
Q  266 agctctgcttc 276  Q
    |||||||||||    
T  37411266 agctctgcttc 37411256  T

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Target: chr5; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 37411366 - 37411256
Alignment:
Q  15 agctgttgctgcaaaaattagtacacaaacacaaaataatttgttagaaaaattattaggctgagttgcggattagttcgctttctttaaaacgatttgc 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||    
T  37411366 agctgttgctgcaaaaattagtacacaaacacaaaataatttgttagaaaaattattaggctgagttgcggattagttcgctttttttaagacgattcgc 37411267  T
Q  115 agctctgcttc 125  Q
    |||||||||||    
T  37411266 agctctgcttc 37411256  T

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Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 169 - 279
Target Start/End: Complemental strand, 21795812 - 21795700
Alignment:
Q  169 tgttgctgcaaaaattagtacacaaacacaaaa--taatttgttagaaaaattattaggctgagttgcggattagttcgctttctttaaaacgatttgca 266  Q
    |||||||| ||||||| ||||||||||||||||  |||||||||| ||||||||||||||||||| ||||| ||| ||||||||||||| |||||| |||    
T  21795812 tgttgctgaaaaaattggtacacaaacacaaaaaataatttgttaaaaaaattattaggctgagtcgcggactaggtcgctttctttaagacgattagca 21795713  T
Q  267 gctctgcttcaaa 279  Q
    |||||||||||||    
T  21795712 gctctgcttcaaa 21795700  T

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Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 21795812 - 21795700
Alignment:
Q  18 tgttgctgcaaaaattagtacacaaacacaaaa--taatttgttagaaaaattattaggctgagttgcggattagttcgctttctttaaaacgatttgca 115  Q
    |||||||| ||||||| ||||||||||||||||  |||||||||| ||||||||||||||||||| ||||| ||| ||||||||||||| |||||| |||    
T  21795812 tgttgctgaaaaaattggtacacaaacacaaaaaataatttgttaaaaaaattattaggctgagtcgcggactaggtcgctttctttaagacgattagca 21795713  T
Q  116 gctctgcttcaaa 128  Q
    |||||||||||||    
T  21795712 gctctgcttcaaa 21795700  T

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Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 19074107 - 19074219
Alignment:
Q  18 tgttgctgcaaaaattagtacacaaacacaaaa--taatttgttagaaaaattattaggctgagttgcggattagttcgctttctttaaaacgatttgca 115  Q
    |||||||| ||||||||||||||||||||||||  |||||||||| ||||||||||||| ||||| || ||  || ||||||||||||| |||||| |||    
T  19074107 tgttgctgaaaaaattagtacacaaacacaaaaaataatttgttaaaaaaattattaggttgagtcgcagaccagatcgctttctttaagacgattcgca 19074206  T
Q  116 gctctgcttcaaa 128  Q
    |||||||||||||    
T  19074207 gctctgcttcaaa 19074219  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 169 - 279
Target Start/End: Original strand, 19074107 - 19074219
Alignment:
Q  169 tgttgctgcaaaaattagtacacaaacacaaaa--taatttgttagaaaaattattaggctgagttgcggattagttcgctttctttaaaacgatttgca 266  Q
    |||||||| ||||||||||||||||||||||||  |||||||||| ||||||||||||| ||||| || ||  || ||||||||||||| |||||| |||    
T  19074107 tgttgctgaaaaaattagtacacaaacacaaaaaataatttgttaaaaaaattattaggttgagtcgcagaccagatcgctttctttaagacgattcgca 19074206  T
Q  267 gctctgcttcaaa 279  Q
    |||||||||||||    
T  19074207 gctctgcttcaaa 19074219  T

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Target: chr1; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 19121997 - 19122109
Alignment:
Q  18 tgttgctgcaaaaattagtacacaaacacaaaa--taatttgttagaaaaattattaggctgagttgcggattagttcgctttctttaaaacgatttgca 115  Q
    |||||||| ||||||||||||||||||||||||  |||||||||| ||||||||||||| ||||| || ||  || ||||||||||||| |||||| |||    
T  19121997 tgttgctgaaaaaattagtacacaaacacaaaaaataatttgttaaaaaaattattaggttgagtcgcagaccagatcgctttctttaagacgattcgca 19122096  T
Q  116 gctctgcttcaaa 128  Q
    |||||||||||||    
T  19122097 gctctgcttcaaa 19122109  T

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Target: chr1; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 169 - 279
Target Start/End: Original strand, 19121997 - 19122109
Alignment:
Q  169 tgttgctgcaaaaattagtacacaaacacaaaa--taatttgttagaaaaattattaggctgagttgcggattagttcgctttctttaaaacgatttgca 266  Q
    |||||||| ||||||||||||||||||||||||  |||||||||| ||||||||||||| ||||| || ||  || ||||||||||||| |||||| |||    
T  19121997 tgttgctgaaaaaattagtacacaaacacaaaaaataatttgttaaaaaaattattaggttgagtcgcagaccagatcgctttctttaagacgattcgca 19122096  T
Q  267 gctctgcttcaaa 279  Q
    |||||||||||||    
T  19122097 gctctgcttcaaa 19122109  T

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Target: chr8 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 36640440 - 36640527
Alignment:
Q  17 ctgttgctgcaaaaattagtacacaaacacaaaataatttgttagaaaa-attattaggctgagttgcggattagttcgctttctttaa 104  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||| ||| |||||||||||||    
T  36640440 ctgttgctg-aaaaattagtacacaaacacaaaataatttgttaaaaaacattattaggctgagtcgcggactagatcgctttctttaa 36640527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 168 - 255
Target Start/End: Original strand, 36640440 - 36640527
Alignment:
Q  168 ctgttgctgcaaaaattagtacacaaacacaaaataatttgttagaaaa-attattaggctgagttgcggattagttcgctttctttaa 255  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||| ||| |||||||||||||    
T  36640440 ctgttgctg-aaaaattagtacacaaacacaaaataatttgttaaaaaacattattaggctgagtcgcggactagatcgctttctttaa 36640527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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