View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0742_low_1 (Length: 543)
Name: NF0742_low_1
Description: NF0742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0742_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 459; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 32 - 514
Target Start/End: Original strand, 34231814 - 34232296
Alignment:
| Q |
32 |
aataatattacaggttttcaacagctagttcattttcgtttaaatgacaaccgtctaaacggaacaattccttcctctttgttatctttgcctcgtttgc |
131 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34231814 |
aataaaattacaggttttcaacagctagttcgttttcgtttaaatgacaaccgtctaaacggaacaattccttcctctttgttatctttgcctcgtttgc |
34231913 |
T |
|
| Q |
132 |
taaatttatatctatcaaacaatcaaattacagggcatatcagtgcaatctcgtcgtattcgttagaggctctaaatctaggcggtaacaagctacaagg |
231 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34231914 |
taaatttatatctatcaaacaatcaacttacagggcatatcagtgcaatctcgtcctattcgttagaggctctaaatctaggcggtaacaagctacaagg |
34232013 |
T |
|
| Q |
232 |
caatattccagaatcaattttcaaccttgtaaatttagctgtattagatctatcatcaaacaacttgagtggtgttgtcaattttcaacactttggcaaa |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34232014 |
caatattccagaatcaattttcaaccttgtaaatttagctgtattagatctatcatcaaacaacttgagtggtgttgtcaattttcaacactttggcaaa |
34232113 |
T |
|
| Q |
332 |
cttcaaaatttgtattctttgtccctttcacagaatacacaattatcactaacctttgaatccaatgttagttacaatttttctcatctaagggaattgg |
431 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
34232114 |
cttcaaaatttgtattctttgtccctttcacagaatacacaattatcactaacctttgaatccaatgtcagttacaatttttctcatctaagggaattgg |
34232213 |
T |
|
| Q |
432 |
atttatcttctatcaacttgacaaactttcccatattatcagaaaaattcctaagtttggattattttgatttgtccaataac |
514 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34232214 |
atttgtcttctatcaacttgacaaactttcccatattatcagaaaaattcctaagtttggattattttgatttgtccaataac |
34232296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 32 - 441
Target Start/End: Original strand, 34239566 - 34239975
Alignment:
| Q |
32 |
aataatattacaggttttcaacagctagttcattttcgtttaaatgacaaccgtctaaacggaacaattccttcctctttgttatctttgcctcgtttgc |
131 |
Q |
| |
|
||||| ||| ||||||||||| ||||| || |||| | |||||||||||| ||||| ||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
34239566 |
aataaaattgcaggttttcaaaagctaatttatttgaggttaaatgacaacttgctaaatggaacaattccttcctccttgttatctttgccttctttgg |
34239665 |
T |
|
| Q |
132 |
taaatttatatctatcaaacaatcaaattacagggcatatcagtgcaatctcgtcgtattcgttagaggctctaaatctaggcggtaacaagctacaagg |
231 |
Q |
| |
|
|| | | |||||||||||||||| | ||||||||| |||||||| |||||| || ||||| |||||| |||| |||| || |||||||||||||| |
|
|
| T |
34239666 |
tacttctgtatctatcaaacaatcgacttacagggcctatcagtgaaatctcatcatattccttagagtatctatctctatgcaacaacaagctacaagg |
34239765 |
T |
|
| Q |
232 |
caatattccagaatcaattttcaaccttgtaaatttagctgtattagatctatcatcaaacaacttgagtggtgttgtcaattttcaacactttggcaaa |
331 |
Q |
| |
|
|||||||| | |||||||||||||||| ||| || | | || |||||||||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
34239766 |
tgatattccaaattcaattttcaaccttgcaaacctaattacactatgtctatcatcaaacaacttgagtggtgttgtcaattttcaagactttacaaaa |
34239865 |
T |
|
| Q |
332 |
cttcaaaatttgtattctttgtccctttcacagaatacacaattatcactaacctttgaatccaatgttagttacaatttttctcatctaagggaattgg |
431 |
Q |
| |
|
|||||||| ||| ||||| ||||||||||||| |||| ||||||||||||| |||||||| |||||||| |||| |||||||||| |||| |||||| |
|
|
| T |
34239866 |
cttcaaaaattggattctctgtccctttcacataatagccaattatcactaaactttgaatacaatgttacttaccatttttctcaactaacaaaattgg |
34239965 |
T |
|
| Q |
432 |
atttatcttc |
441 |
Q |
| |
|
|||| ||||| |
|
|
| T |
34239966 |
atttgtcttc |
34239975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 87 - 467
Target Start/End: Complemental strand, 42129914 - 42129534
Alignment:
| Q |
87 |
taaacggaacaattccttcctctttgttatctttgcctcgtttgctaaatttatatctatcaaacaatcaaattacagggcatatcagtgcaatctcgtc |
186 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||| |||| | ||||| ||||||||| |||| ||||| ||||||||| ||||||||| || |
|
|
| T |
42129914 |
taaatggaacaattccttcctccttgttatctttgccgtctttggttcatttagttctatcaaataatcgtcttacaaggcatatcactgcaatctcatc |
42129815 |
T |
|
| Q |
187 |
gtattcgttagaggctctaaatctaggcggtaacaagctacaaggcaatattccagaatcaattttcaaccttgtaaatttagctgtattagatctatca |
286 |
Q |
| |
|
||||| ||| || ||| ||||| |||| |||||||||||||||||||||||| |||| ||||||||||||| ||| ||| || | ||||||||||| |
|
|
| T |
42129814 |
atattccttaaagaagctagatctaagcggcaacaagctacaaggcaatattccaaaatctattttcaaccttgcaaacttaactttgctagatctatca |
42129715 |
T |
|
| Q |
287 |
tcaaacaacttgagtggtgttgtcaattttcaacactttggcaaacttcaaaatttgtattctttgtccctttcacagaatacacaattatcactaacct |
386 |
Q |
| |
|
|||||||||||||||| |||| | |||||||||||||| |||||||||| ||||| | || |||| |||||||| |||| ||||||||| |||| | |
|
|
| T |
42129714 |
tcaaacaacttgagtgatgttattgattttcaacacttttccaaacttcaatatttgaaaactctgtcactttcacataatagccaattatcattaacat |
42129615 |
T |
|
| Q |
387 |
ttgaatccaatgttagttacaatttttctcatctaagggaattggatttatcttctatcaacttgacaaactttcccatat |
467 |
Q |
| |
|
||||| ||||||| | ||||||||||||| ||||| |||||||||| ||||||||||| |||||| | |||||||||| |
|
|
| T |
42129614 |
ttgaacccaatgtcaattacaatttttcttatctatcaaaattggatttgtcttctatcaatttgacagaatttcccatat |
42129534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 135 - 442
Target Start/End: Original strand, 41712663 - 41712970
Alignment:
| Q |
135 |
atttatatctatcaaacaatcaaattacagggcatatcagtgcaatctcgtcgtattcgttagaggctctaaatctaggcggtaacaagctacaaggcaa |
234 |
Q |
| |
|
||||| |||||||||| || | | ||| ||||||||||| ||||||||| || ||||| ||||||| ||| ||||| ||| ||||| ||| ||||||| |
|
|
| T |
41712663 |
atttagatctatcaaataaccgacttatagggcatatcattgcaatctcatcatattccttagaggagctatatctattcggcaacaaactagaaggcaa |
41712762 |
T |
|
| Q |
235 |
tattccagaatcaattttcaaccttgtaaatttagctgtattagatctatcatcaaacaacttgagtggtgttgtcaattttcaacactttggcaaactt |
334 |
Q |
| |
|
||||||||||||||||||||| ||| |||| || || | |||| ||||||||||||||||| ||||||||||| |||||||| |||| | ||||| |
|
|
| T |
41712763 |
tattccagaatcaattttcaaacttataaacctaactagactagacctatcatcaaacaacttcagtggtgttgttgattttcaatacttctccgaactt |
41712862 |
T |
|
| Q |
335 |
caaaat-ttgtattctttgtccctttcacagaatacacaattatcactaacctttgaatccaatgttagttacaatttttctcatctaagggaattggat |
433 |
Q |
| |
|
|||||| | ||| ||| |||||||||||| |||| ||||| ||||||| ||||||||||| ||| | ||||||||||||||| |||| ||||||||| |
|
|
| T |
41712863 |
caaaatctagta-tctctgtccctttcacttaataatcaattgtcactaaactttgaatccattgtcaattacaatttttctcaactaatagaattggat |
41712961 |
T |
|
| Q |
434 |
ttatcttct |
442 |
Q |
| |
|
||||||||| |
|
|
| T |
41712962 |
ttatcttct |
41712970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 218 - 415
Target Start/End: Original strand, 41571205 - 41571402
Alignment:
| Q |
218 |
aacaagctacaaggcaatattccagaatcaattttcaaccttgtaaatttagctgtattagatctatcatcaaacaacttgagtggtgttgtcaattttc |
317 |
Q |
| |
|
||||||||||||||| ||||||| ||||| ||||||||||||||||| || || | || || ||||||||||||||||||||| ||||||||||| |
|
|
| T |
41571205 |
aacaagctacaaggcgatattcctgaatctattttcaaccttgtaaacctaactacactatgcctgtcatcaaacaacttgagtggtattgtcaatttta |
41571304 |
T |
|
| Q |
318 |
aacactttggcaaacttcaaaatttgtattctttgtccctttcacagaatacacaattatcactaacctttgaatccaatgttagttacaatttttct |
415 |
Q |
| |
|
|| ||||| |||||||||||||||| ||||| ||||||||||||| |||| |||||||||| | ||||||||||||||| ||||||||||||||| |
|
|
| T |
41571305 |
aatacttttccaaacttcaaaatttgaattctctgtccctttcacataatagtcaattatcaccgaactttgaatccaatgtcagttacaatttttct |
41571402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 86 - 320
Target Start/End: Complemental strand, 42124540 - 42124306
Alignment:
| Q |
86 |
ctaaacggaacaattccttcctctttgttatctttgcctcgtttgctaaatttatatctatcaaacaatcaaattacagggcatatcagtgcaatctcgt |
185 |
Q |
| |
|
||||| |||||| |||||||||| ||||||||||||||| |||| || |||| |||||||| | |||| | |||||||||||||||||| ||| || | |
|
|
| T |
42124540 |
ctaaatggaacagttccttcctccttgttatctttgccttctttggcaattttagatctatcatataatcgacttacagggcatatcagtgaaatatcat |
42124441 |
T |
|
| Q |
186 |
cgtattcgttagaggctctaaatctaggcggtaacaagctacaaggcaatattccagaatcaattttcaaccttgtaaatttagctgtattagatctatc |
285 |
Q |
| |
|
| ||||| ||| | |||| |||| || |||| |||||||||||||||||| || || ||||||||||| ||| || || ||| |||||| |
|
|
| T |
42124440 |
catattctttaaacatgctaactctaagcaacaacaggctacaaggcaatattcctgagtccattttcaacctaacaaaactatctcacttaattctatc |
42124341 |
T |
|
| Q |
286 |
atcaaacaacttgagtggtgttgtcaattttcaac |
320 |
Q |
| |
|
|| ||| ||||||||||| ||||||||||||||| |
|
|
| T |
42124340 |
ttcgaacgacttgagtggtcttgtcaattttcaac |
42124306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 325
Target Start/End: Complemental strand, 41432439 - 41432339
Alignment:
| Q |
225 |
tacaaggcaatattccagaatcaattttcaaccttgtaaatttagctgtattagatctatcatcaaacaacttgagtggtgttgtcaattttcaacactt |
324 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||| | || || |||||| ||||| |||||||||||| ||||||||||| ||| ||| |
|
|
| T |
41432439 |
tacaaggaaatattccagaatcacttttcaaccttgtaaaccttactaacttgtgtctatcttcaaataacttgagtggttttgtcaattttaaactctt |
41432340 |
T |
|
| Q |
325 |
t |
325 |
Q |
| |
|
| |
|
|
| T |
41432339 |
t |
41432339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 9e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 85 - 404
Target Start/End: Complemental strand, 12249515 - 12249196
Alignment:
| Q |
85 |
tctaaacggaacaattccttcctctttgttatctttgcctcgtttgctaaatttatatctatcaaacaatcaaattacagggcatatcagtgcaatctcg |
184 |
Q |
| |
|
||||||||||||||||||| || | ||||||||||||||| |||| | || || | || |||||||||| | ||||||| ||||||||||||||||| |
|
|
| T |
12249515 |
tctaaacggaacaattcctcccaccttgttatctttgccttctttggaacatctagagctgtcaaacaatcgatttacaggacatatcagtgcaatctca |
12249416 |
T |
|
| Q |
185 |
tcgtattcgttagaggctctaaatctaggcggtaacaagctacaaggcaatattccagaatcaattttcaaccttgtaaatttagctgtattagatctat |
284 |
Q |
| |
|
|||||||||||||| | ||| ||||| ||||||||||||||||||||||||||| |||| |||||||||||| || || || | ||||| ||| |
|
|
| T |
12249415 |
tcgtattcgttagatacgctatatctatctggtaacaagctacaaggcaatattccaaaatccattttcaaccttacaaccctaactagactagatttat |
12249316 |
T |
|
| Q |
285 |
catcaaacaacttgagtggtgttgtcaattttcaacactttggcaaacttcaaaatttgtattctttgtccctttcacagaatacacaattatcactaac |
384 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||| ||||||||| |||| || | ||||||||||||| |||| |||||||||||||| |
|
|
| T |
12249315 |
catcaaacaacttgagtggtgttgttgattttcaactcttttccaaacttcattggttgttttttctgtccctttcacataatagccaattatcactaac |
12249216 |
T |
|
| Q |
385 |
ctttgaatccaatgttagtt |
404 |
Q |
| |
|
||||||||||||||| |||| |
|
|
| T |
12249215 |
ctttgaatccaatgtcagtt |
12249196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 8e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 40 - 442
Target Start/End: Complemental strand, 8524116 - 8523714
Alignment:
| Q |
40 |
tacaggttttcaacagctagttcattttcgtttaaatgacaaccgtctaaacggaacaattccttcctctttgttatctttgcctcgtttgctaaattta |
139 |
Q |
| |
|
||||||| ||||| ||||| | |||| || |||||||||||| ||||| || ||||||||| |||| |||||||| ||||| ||||||| ||| |
|
|
| T |
8524116 |
tacaggtcttcaaaagctaactaatttgcgattaaatgacaacttgctaaatggtacaattcctccctccttgttatccttgccatttttgctagtatta |
8524017 |
T |
|
| Q |
140 |
tatctatcaaacaatcaaattacagggcatatcagtgcaatctcgtcgtattcgttagaggctctaaatctaggcggtaacaagctacaaggcaatattc |
239 |
Q |
| |
|
|| ||||||| |||||| |||||||| ||||||| |||||||| || ||||| |||||| |||| |||| | |||| ||||||||||||||||| |
|
|
| T |
8524016 |
gatttatcaaataatcaacttacagggaatatcagcgcaatctcatcatattccttagagtttctatctctaagtaacaacaggctacaaggcaatattc |
8523917 |
T |
|
| Q |
240 |
cagaatcaattttcaaccttgtaaatttagctgtattagatctatcatcaaacaacttgagtggtgttgtcaattttcaacactttggcaaacttcaaaa |
339 |
Q |
| |
|
||||||| ||||||||||||| ||| || | | |||||||||||||||||||||||||||||||||||||||| ||| || || ||| |||||| | |
|
|
| T |
8523916 |
cagaatccattttcaaccttgcaaacctaagtagactagatctatcatcaaacaacttgagtggtgttgtcaatttccaaaacatttccaaccttcaaca |
8523817 |
T |
|
| Q |
340 |
tttgtattctttgtccctttcacagaatacacaattatcactaacctttgaatccaatgttagttacaatttttctcatctaagggaattggatttatct |
439 |
Q |
| |
|
|||| | | |||| |||||| | |||| ||||||||| ||| ||||||||||| ||| | ||| | ||||| | |||||| |||||||| ||| ||| |
|
|
| T |
8523816 |
tttgaaatttttgcagctttcagataatagccaattatcagtaaactttgaatccagtgtcaattatagtttttttgatctaatggaattgggtttgtct |
8523717 |
T |
|
| Q |
440 |
tct |
442 |
Q |
| |
|
||| |
|
|
| T |
8523716 |
tct |
8523714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 7e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 87 - 399
Target Start/End: Original strand, 25522086 - 25522398
Alignment:
| Q |
87 |
taaacggaacaattccttcctctttgttatctttgcctcgtttgctaaatttatatctatcaaacaatcaaattacagggcatatcagtgcaatctcgtc |
186 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |||| || ||||||||||||| ||||||| | ||||||| ||||||||||| ||| || |
|
|
| T |
25522086 |
taaatggaacaattccttcctctttgttatctttgccttctttggtatatttatatctatctaacaatcgacttacaggatctatcagtgcaacctcatc |
25522185 |
T |
|
| Q |
187 |
gtattcgttagaggctctaaatctaggcggtaacaagctacaaggcaatattccagaatcaattttcaaccttgtaaatttagctgtattagatctatca |
286 |
Q |
| |
|
||||| |||||| | |||||||| | ||||||||||||||||||||||||||||| |||||||| ||| ||| || || || |||||| |
|
|
| T |
25522186 |
atattccttagagagtttaaatctatacaacaacaagctacaaggcaatattccagaatccattttcaatcttacaaacctaactaatctaattctatct |
25522285 |
T |
|
| Q |
287 |
tcaaacaacttgagtggtgttgtcaattttcaacactttggcaaactt-caaaatttgtattctttgtccctttcacagaatacacaattatcactaacc |
385 |
Q |
| |
|
| |||| ||||||||||| |||||||||||||||||||| ||||||| |||| || ||| ||| ||||||||| |||||| ||||| ||||||| | |
|
|
| T |
25522286 |
ttaaacgacttgagtggttttgtcaattttcaacacttttccaaacttacaaatcttcgatt-tttatccctttcatggaatactcaattgtcactaaac |
25522384 |
T |
|
| Q |
386 |
tttgaatccaatgt |
399 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
25522385 |
ttcgaatccaatgt |
25522398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 223 - 316
Target Start/End: Complemental strand, 11119042 - 11118949
Alignment:
| Q |
223 |
gctacaaggcaatattccagaatcaattttcaaccttgtaaatttagctgtattagatctatcatcaaacaacttgagtggtgttgtcaatttt |
316 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||| ||| ||| || | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11119042 |
gctacaaggcaatattccagaatgcattttcagcctaacaaagctagatgaactagatctatcatcaaacaacttgagtggtgttgtcaatttt |
11118949 |
T |
|
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