View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0742_low_10 (Length: 286)
Name: NF0742_low_10
Description: NF0742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0742_low_10 |
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| [»] scaffold0083 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 11462107 - 11462353
Alignment:
| Q |
1 |
taagtccaggatcaatttcaaacaaattctattatgatgttgaatttccaaggggtcatattgcactcaaaagttttaatgctgaactagtagatgaatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11462107 |
taagtccaggatcaatttcaaacaaattctattatgatgttgaatttccaaggggtcatattgcactcaaaagttttaatgctgaactagtagatgaatc |
11462206 |
T |
|
| Q |
101 |
agggaattctgtacctctccaagaaacttatcttcaccattggattgttctaaaataccaacaacctaaaaatgtgacaaacaataaccaaacagatatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11462207 |
agggaattctgtacctctccaagaaacttatcttcaccattggattgttctaaaataccaacaacctaaaaatgtgacaaacaataaccaaacagatatt |
11462306 |
T |
|
| Q |
201 |
attatggtgagaaataatggattatgccaagatgatattcttcgaca |
247 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
11462307 |
attatggtgagaaataatggattatgccaagatgatattcttggaca |
11462353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 11472291 - 11472476
Alignment:
| Q |
1 |
taagtccaggatcaatttcaaacaaattctattatgatgttgaatttccaaggggtcatattgcactcaaaagttttaatgctgaactagtagatgaatc |
100 |
Q |
| |
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||||||||||||| ||||||| ||||| |||||||||| ||| |||||||| ||||||||| |||| || ||||| ||||||| |||| ||||||| |
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| T |
11472291 |
taagtccaggatctgtttcaaataaattttattatgatgctgattttccaagaggtcatatttcacttaagagtttctttgctgaagtagttaatgaatc |
11472390 |
T |
|
| Q |
101 |
agggaattctgtacctctccaagaaacttatcttcaccattggattgttctaaaataccaacaacctaaaaatgtgacaaacaata |
186 |
Q |
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| T |
11472391 |
agggaattcagtacctctccatcaaacttatctacaccattggactgttacaagataccaccaacctaaaaatgtgacaaacaata |
11472476 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 11478683 - 11478873
Alignment:
| Q |
1 |
taagtccaggatcaatttcaaacaaattctattatgatgttgaatttccaaggggtcatattgcactcaaaagttttaatgctgaactagtagatgaatc |
100 |
Q |
| |
|
||||||||||||| ||||||| ||| | |||||||||||||| |||||||| ||||||||| || |||||| ||| ||||||| |||| |||||||| |
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| T |
11478683 |
taagtccaggatctgtttcaaataaaatatattatgatgttgattttccaagtggtcatatttcagtcaaaaatttctttgctgaagtagttgatgaatc |
11478782 |
T |
|
| Q |
101 |
agggaattctgtacctctccaagaaacttatcttcaccattggattgttctaaaataccaacaacctaaaaatgtgacaaacaataaccaa |
191 |
Q |
| |
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|||| |||| |||||||||| |||||||||| ||||||||| ||||| | | |||||| ||||||||||||||||||||||||| |||| |
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| T |
11478783 |
agggcattcaatacctctccatcaaacttatctacaccattgggttgttgtgagataccaccaacctaaaaatgtgacaaacaatagccaa |
11478873 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 36 - 186
Target Start/End: Original strand, 11484989 - 11485139
Alignment:
| Q |
36 |
gatgttgaatttccaaggggtcatattgcactcaaaagttttaatgctgaactagtagatgaatcagggaattctgtacctctccaagaaacttatcttc |
135 |
Q |
| |
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|||||||| |||||||| ||||||||| ||||||| ||||| ||||||| |||| |||||||||||||||| ||||||||||| |||||||||| | |
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| T |
11484989 |
gatgttgattttccaagaggtcatatttcactcaagagtttctttgctgaagtagttaatgaatcagggaattcagtacctctccatcaaacttatctac |
11485088 |
T |
|
| Q |
136 |
accattggattgttctaaaataccaacaacctaaaaatgtgacaaacaata |
186 |
Q |
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| |||||||||||| ||| ||| || ||||||||||||||| ||||||||| |
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| T |
11485089 |
atcattggattgttgtaagatatcaccaacctaaaaatgtggcaaacaata |
11485139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 21546403 - 21546626
Alignment:
| Q |
16 |
tttcaaacaaattctattatgatgttgaatttccaaggggtcatattgcactcaaaagttttaatgctgaactagtagatgaatcagggaattctgtacc |
115 |
Q |
| |
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||||||| ||| | |||||||||||||| |||||||| ||||||||| ||||||| ||||| |||||||| ||||| ||||| ||||||||||| |||| |
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| T |
21546403 |
tttcaaataaagtgtattatgatgttgagtttccaagaggtcatatttcactcaagagtttcaatgctgagctagttgatgatgcagggaattctatacc |
21546502 |
T |
|
| Q |
116 |
tctccaagaaacttatcttcaccattggattgttctaaaataccaacaacctaaaaatgtgacaaacaataaccaaacagatattattatggtgagaaat |
215 |
Q |
| |
|
||| | |||||||||| ||||||||||||||| ||| |||||| |||||||||||||||||| |||| |||| ||| ||||||| | |||||| |
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| T |
21546503 |
tctttatcaaacttatctacaccattggattgttataagataccaccaacctaaaaatgtgacaccaaatagccaatcaggtattattttccaaagaaat |
21546602 |
T |
|
| Q |
216 |
aatggattatgccaagatgatatt |
239 |
Q |
| |
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||||| || |||||||| |||||| |
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| T |
21546603 |
aatggcttttgccaagaggatatt |
21546626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 47072 - 47286
Alignment:
| Q |
16 |
tttcaaacaaattctattatgatgttgaatttccaaggggtcatattgcactcaaaagttttaatgctgaactagtagatgaatcagggaattctgtacc |
115 |
Q |
| |
|
||||||||||| | || ||||||||||| |||||||| || |||||| ||||||| ||||| |||||||||||||| |||||| |||| ||||||||||| |
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|
| T |
47072 |
tttcaaacaaagtatactatgatgttgagtttccaagaggccatatttcactcaagagtttcaatgctgaactagttgatgaagcaggaaattctgtacc |
47171 |
T |
|
| Q |
116 |
tctccaagaaacttatcttcaccattggattgttctaaaataccaacaacctaaaaatgtgacaaacaataaccaaacagatattattatggtgagaaat |
215 |
Q |
| |
|
||| || |||||||||| ||||| ||| |||| | | ||||||||||||||||||||||||| | |||| ||| ||| ||||||||| || |||||| |
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|
| T |
47172 |
tcttcatcaaacttatctacaccactgggctgttgttagataccaacaacctaaaaatgtgacacaaaataggcaatcaggtattattattgtaagaaat |
47271 |
T |
|
| Q |
216 |
aatggattatgccaa |
230 |
Q |
| |
|
|||| || |||||| |
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|
| T |
47272 |
gatggcttttgccaa |
47286 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 30 - 149
Target Start/End: Complemental strand, 38239080 - 38238961
Alignment:
| Q |
30 |
tattatgatgttgaatttccaaggggtcatattgcactcaaaagttttaatgctgaactagtagatgaatcagggaattctgtacctctccaagaaactt |
129 |
Q |
| |
|
||||||||| ||| |||||||| |||||| | |||||||| ||||| ||||||||| |||| || |||||||||||| ||||||||||||| ||||||| |
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|
| T |
38239080 |
tattatgatattggttttccaagaggtcatgtagcactcaagagtttcaatgctgaagtagttgacgaatcagggaatcctgtacctctccatgaaactt |
38238981 |
T |
|
| Q |
130 |
atcttcaccattggattgtt |
149 |
Q |
| |
|
|||| || |||||| ||||| |
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|
| T |
38238980 |
atctccatcattggcttgtt |
38238961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 143
Target Start/End: Complemental strand, 38244048 - 38243935
Alignment:
| Q |
30 |
tattatgatgttgaatttccaaggggtcatattgcactcaaaagttttaatgctgaactagtagatgaatcagggaattctgtacctctccaagaaactt |
129 |
Q |
| |
|
||||||||| |||| |||||||| ||||||||||||||||| ||||| ||||||||| |||| |||||| || ||| || |||||||||| ||||||| |
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|
| T |
38244048 |
tattatgatattgattttccaagaggtcatattgcactcaagagtttcaatgctgaagtagttgatgaagttggtaatcctatacctctccatgaaactt |
38243949 |
T |
|
| Q |
130 |
atcttcaccattgg |
143 |
Q |
| |
|
|||| || |||||| |
|
|
| T |
38243948 |
atctccatcattgg |
38243935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 143
Target Start/End: Complemental strand, 38215161 - 38215048
Alignment:
| Q |
30 |
tattatgatgttgaatttccaaggggtcatattgcactcaaaagttttaatgctgaactagtagatgaatcagggaattctgtacctctccaagaaactt |
129 |
Q |
| |
|
||||||||| |||| |||||||| |||||| | |||||||| ||||| ||||||||| | || |||||| || ||| || |||| ||||| ||||||| |
|
|
| T |
38215161 |
tattatgatattgattttccaagaggtcatgtagcactcaagagtttcaatgctgaagttgttgatgaagatggtaatcctatacccctccatgaaactt |
38215062 |
T |
|
| Q |
130 |
atcttcaccattgg |
143 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
38215061 |
atcttcatcattgg |
38215048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 149
Target Start/End: Complemental strand, 38221200 - 38221081
Alignment:
| Q |
30 |
tattatgatgttgaatttccaaggggtcatattgcactcaaaagttttaatgctgaactagtagatgaatcagggaattctgtacctctccaagaaactt |
129 |
Q |
| |
|
||||||||| |||| |||||||| |||||| | ||| |||| ||||| |||||||| |||| |||||| || ||| || |||| ||||| ||||||| |
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|
| T |
38221200 |
tattatgatattgattttccaagaggtcatgtagcaatcaagagtttccatgctgaagtagttgatgaagatggtaatcctatacccctccatgaaactt |
38221101 |
T |
|
| Q |
130 |
atcttcaccattggattgtt |
149 |
Q |
| |
|
||||||| |||||| ||||| |
|
|
| T |
38221100 |
atcttcatcattgggttgtt |
38221081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 149
Target Start/End: Complemental strand, 38254311 - 38254192
Alignment:
| Q |
30 |
tattatgatgttgaatttccaaggggtcatattgcactcaaaagttttaatgctgaactagtagatgaatcagggaattctgtacctctccaagaaactt |
129 |
Q |
| |
|
||||||||| |||| |||||||| || ||||| ||| |||| ||| |||||||| |||| |||||||| || ||| || |||||||||| ||||||| |
|
|
| T |
38254311 |
tattatgatattgattttccaagaggccatatagcaatcaaggatttccatgctgaagtagttgatgaatctggaaatcctatacctctccatgaaactt |
38254212 |
T |
|
| Q |
130 |
atcttcaccattggattgtt |
149 |
Q |
| |
|
|||| || |||||| ||||| |
|
|
| T |
38254211 |
atctccatcattgggttgtt |
38254192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 149
Target Start/End: Complemental strand, 17434732 - 17434589
Alignment:
| Q |
6 |
ccaggatcaatttcaaacaaattctattatgatgttgaatttccaaggggtcatattgcactcaaaagttttaatgctgaactagtagatgaatcaggga |
105 |
Q |
| |
|
||||||||| || ||| ||||| ||||||||| |||| ||||||| |||||| | ||| |||| |||||| |||| ||| | || |||||| | |||| |
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|
| T |
17434732 |
ccaggatcagttataaataaattttattatgatattgattttccaaaaggtcatgtagcaatcaagagttttgatgcagaagttgttgatgaagctggga |
17434633 |
T |
|
| Q |
106 |
attctgtacctctccaagaaacttatcttcaccattggattgtt |
149 |
Q |
| |
|
|||| |||| | || |||||||||||||| |||||| ||||| |
|
|
| T |
17434632 |
attcgataccgttgcacgaaacttatcttcatcattgggttgtt |
17434589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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