View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0742_low_11 (Length: 260)
Name: NF0742_low_11
Description: NF0742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0742_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 39 - 236
Target Start/End: Original strand, 36149730 - 36149927
Alignment:
| Q |
39 |
ccttcatttgcacttctttttctagcttgggagagtcttcttctttctcatctattttaagtgcacatgtttggaggagaagtgcttcttcttcgtcttt |
138 |
Q |
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| T |
36149730 |
ccttcatttgcacttctttttctagcttgggagagtcttcttctttctcatctattttgagtgcacatgtttggaggagaagtgcttcttcttcgtcttt |
36149829 |
T |
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| Q |
139 |
gcgtgcttgaacttcaatggtgtgcggatgtggtatagttaaaagtagaggtgctttttcttgctcttttttgtgaacttgagcttcaagggtatgat |
236 |
Q |
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| T |
36149830 |
gcgtgcttgaacttcaatggtgtgcggatgtggtatagttaaaagtagaggtgctttttcttgctctttgttgtgaacttcagcttcaagggtatgat |
36149927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 74 - 227
Target Start/End: Original strand, 36083499 - 36083652
Alignment:
| Q |
74 |
tcttcttctttctcatctattttaagtgcacatgtttggaggagaagtgcttcttcttcgtctttgcgtgcttgaacttcaatggtgtgcggatgtggta |
173 |
Q |
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| T |
36083499 |
tcttcttctttgtcatttattttgagtgcacatgtttggaggagaagtgcttgttcttcctctttgtgtgcttgaacttccatggtgtccggttgtggtg |
36083598 |
T |
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| Q |
174 |
tagttaaaagtagaggtgctttttcttgctcttttttgtgaacttgagcttcaa |
227 |
Q |
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| T |
36083599 |
tgattaagaggagaagttcttcttcttggtctttgttgtgaacttcaacttcaa |
36083652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 220
Target Start/End: Original strand, 36083606 - 36083717
Alignment:
| Q |
112 |
gaggagaagtgcttcttcttcgtctttgc-gtg--cttgaacttcaatggtgtgcggatgtggtatagttaaaagtagaggtgctttttcttgctctttt |
208 |
Q |
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| T |
36083606 |
gaggagaagttcttcttcttggtctttgttgtgaacttcaacttcaatggtgtgcggtcgtggtttagttaaaaggagaggtgcttcttcttgctctttg |
36083705 |
T |
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| Q |
209 |
ttgtgaacttga |
220 |
Q |
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| T |
36083706 |
ttgtgaacttga |
36083717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 131
Target Start/End: Original strand, 36149390 - 36149453
Alignment:
| Q |
68 |
ggagagtcttcttctttctcatctattttaagtgcacatgtttggaggagaagtgcttcttctt |
131 |
Q |
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| T |
36149390 |
ggagagtgttcttctttgtcgtctattttcagtgcgcatgtttggatgatgagtgcttcttctt |
36149453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 158
Target Start/End: Original strand, 36160590 - 36160672
Alignment:
| Q |
76 |
ttcttctttctcatctattttaagtgcacatgtttggaggagaagtgcttcttcttcgtctttgcgtgcttgaacttcaatgg |
158 |
Q |
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| T |
36160590 |
ttcttctttgttgtctatttgaagtgcaagtgtttggatgagaagtgcttcttcttgctctttgtatgcttgagcttccatgg |
36160672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 139
Target Start/End: Original strand, 36149576 - 36149641
Alignment:
| Q |
74 |
tcttcttctttctcatctattttaagtgcacatgtttggaggagaagtgcttcttcttcgtctttg |
139 |
Q |
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| T |
36149576 |
tcttcttctttgtcatctattttgagtgcacatgtgtaattgacaagtgcttcttcttggtctttg |
36149641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 41 - 132
Target Start/End: Complemental strand, 26527448 - 26527357
Alignment:
| Q |
41 |
ttcatttgcacttctttttctagcttgggagagtcttcttctttctcatctattttaagtgcacatgtttggaggagaagtgcttcttcttc |
132 |
Q |
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| T |
26527448 |
ttcatgtgcacttctttttctagcttgggagagtgttcttctatctcatctattttgagtgcacatgtttggaggagaagtgcttcttcttc |
26527357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 26527609 - 26527541
Alignment:
| Q |
63 |
gcttgggagagtcttcttctttctcatctattttaagtgcacatgtttggaggagaagtgcttcttctt |
131 |
Q |
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| T |
26527609 |
gcttaggagactgttcttctttgtcgtctattttcagtgcgcatgtttggatgatgagtgcttcttctt |
26527541 |
T |
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