View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0742_low_12 (Length: 257)
Name: NF0742_low_12
Description: NF0742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0742_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 12800178 - 12800414
Alignment:
| Q |
1 |
ccttctacgacctatgtagctccattctaaactcaaacccacttgctccaaaaaccgatctcaaaggtgtagccctagtaatggtaaacaacattctcac |
100 |
Q |
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| T |
12800178 |
ccttctacgacctatgtagctccattctaaactcaaacccacttgctccaaaaaccgatctcaaaggtgtagccctagtaatggtaaacaacattctcac |
12800277 |
T |
|
| Q |
101 |
aaatgcaagtgacacattgaactacattgaaagcttgatcaagaaaactacagatcgtgaaatggaaaaagcattggcattttgtgctgaatcatatata |
200 |
Q |
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| T |
12800278 |
aaatgcaagtgacacattgaactacattgaaagcttgatcaagaaaactacagatcgtgaaatggaaaaagcattggcattttgtgctgaatcatatata |
12800377 |
T |
|
| Q |
201 |
ccagttgtgaagtacactcttccacaagctgatgatg |
237 |
Q |
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| T |
12800378 |
ccagttgtgaagtacactcttccacaagctgctgatg |
12800414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 50632017 - 50631961
Alignment:
| Q |
173 |
attggcattttgtgctgaatcatatataccagttgtgaagtacactcttccacaagc |
229 |
Q |
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| T |
50632017 |
attggctttttgtgctgagtcatacatacctgttgtgaaatacattcttccacaagc |
50631961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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