View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0742_low_2 (Length: 461)
Name: NF0742_low_2
Description: NF0742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0742_low_2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 6 - 461
Target Start/End: Original strand, 12799700 - 12800159
Alignment:
| Q |
6 |
gtcgaagaatatcatgtacgagacaaagacgattttccacaattattaaccctataaactgtcagttggactcaaacgaaaaattcaacttttataaatt |
105 |
Q |
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| T |
12799700 |
gtcgaatagtatcatgtacaagacaaagacgatttcccacaactattaatcctacaaactgttagttggactcgaacggaaaattcaacttttataaatt |
12799799 |
T |
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| Q |
106 |
atagaacctaatatattttaatggtgaaattatccacttaatactcaaatatttttcacatcaagaagatttaaatcctattatattaaactaaaagaaa |
205 |
Q |
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| T |
12799800 |
atagaacctaatatattttaatggtgaaattatccacttaatactcaaatatttttcacatcaagaagatttaaatcctattatattaaactaaaagaaa |
12799899 |
T |
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| Q |
206 |
acaaaactatgtccaacaatttgttaactcactcaaccactaaaactaaccttaaatagaagccaaagaaatcacc------ttctcattctcatttccc |
299 |
Q |
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| T |
12799900 |
acaaaactatgtccaacaatttgttaactcactcaaccactaaaactaaccttaaatagaagccaaagaaatcaccttctcattctcattctcatttccc |
12799999 |
T |
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| Q |
300 |
atttctcacacttctcatttctcaaattccacaccatacccttcacttccactcctcaaaaaatgagaaaaaccataaccattgtttcatcatttgcaat |
399 |
Q |
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|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12800000 |
atttct--cacttctcatttctcaaattccactccatacccttcacttccactcctcaaaaaatgagaaaaaccataaccattgtttcatcatttgcaat |
12800097 |
T |
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| Q |
400 |
tcacattatcctccttgcttccatacctttcacaccatctcaatccaacgatttaatagatc |
461 |
Q |
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| T |
12800098 |
tcacattatcctccttgcttccatacctttcacatcatcccaatccaacgatttaatagatc |
12800159 |
T |
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