View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0742_low_4 (Length: 438)
Name: NF0742_low_4
Description: NF0742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0742_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 132 - 395
Target Start/End: Complemental strand, 3134603 - 3134341
Alignment:
| Q |
132 |
tttccctaataacattaggattgatttgtagtgttgaatgaacattgttgttagaggttctttcatcatagatcgttttaccgccaaaaattattttcaa |
231 |
Q |
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| T |
3134603 |
tttccctaataacattaggattgatttgtagtgttgaatgaacattgttgttagaggttctttcatcatagatcgttttaccgctaaaaattattttcaa |
3134504 |
T |
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| Q |
232 |
ttttccactcttctccattttttggaatagtgtttgcaacaatataatcaatatgaatagagtcggttaaggttggaattatcttgagctacaaggattc |
331 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||| |
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| T |
3134503 |
ttttccactcttctccattttttggtatagtgtttgcaacaatataatcaatatgaatagagtcgattaaggtt-taattatcttgagctgcaaggattc |
3134405 |
T |
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| Q |
332 |
aattagggttgtacaaaatcaagattcaaaaagaaaattgcgagaagaaagaatataggtaatt |
395 |
Q |
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| T |
3134404 |
aattagggttgtacaaaatcaagattgaaaaagaaaattgcgagaagaaagaatataggtaatt |
3134341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 132 - 251
Target Start/End: Original strand, 3747484 - 3747603
Alignment:
| Q |
132 |
tttccctaataacattaggattgatttgtagtgttgaatgaacattgttgttagaggttctttcatcatagatcgttttaccgccaaaaattattttcaa |
231 |
Q |
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||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
3747484 |
tttccctaacaacatttagattgatttgtattgttgaatgaacattgttgttagaggttctttcatcatagatcgttttaccaccaaaaaatattttcaa |
3747583 |
T |
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| Q |
232 |
ttttccactcttctccattt |
251 |
Q |
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|||||| |||||||| |||| |
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| T |
3747584 |
ttttcccctcttctctattt |
3747603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 3135016 - 3134905
Alignment:
| Q |
16 |
atattgtacctttctagtttttaatctatcaatactcattc-aaaaaagaccaatgtatattttttggagtnnnnnnnngtttaaaatttagaagctcgt |
114 |
Q |
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|||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
3135016 |
atattgtacctttctaatttttaatctatcaatactcatacgaaaaaagaccaatgtatattttttgcagtaaaaaaaagtttaaaatttagaagctcgt |
3134917 |
T |
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| Q |
115 |
tgatgacaagtt |
126 |
Q |
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|||||||||||| |
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| T |
3134916 |
tgatgacaagtt |
3134905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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