View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0742_low_5 (Length: 423)

Name: NF0742_low_5
Description: NF0742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0742_low_5
NF0742_low_5
[»] chr8 (2 HSPs)
chr8 (240-410)||(38277595-38277770)
chr8 (30-206)||(38277413-38277592)


Alignment Details
Target: chr8 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 240 - 410
Target Start/End: Original strand, 38277595 - 38277770
Alignment:
Q  240 cttaatttgacatctaaaataggttaagattttggatttatcacttgaacttatacatgcactgatgcaagagtgttccaattaaatcagtgaatattag 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38277595 cttaatttgacatctaaaataggttaagattttggatttatcacttgaacttatacatgcactgatgcaagagtgttccaattaaatcagtgaatattag 38277694  T
Q  340 ctggaagatgcagagcactttttatggacaacttta-----cttgttcttaatggaaggaaggtatccaactagaa 410  Q
    ||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||    
T  38277695 ctggaagatgcagagcactttttatggacaactttacttagcttgttcttaatggaaggaaggtatccaactagaa 38277770  T

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Target: chr8; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 30 - 206
Target Start/End: Original strand, 38277413 - 38277592
Alignment:
Q  30 aatagaaccaatatattatgtgatcatcaatcatgatgtaatctcacttcacgtttttagccacatatcaacaaacacaaacatatannnnnnnaaactt 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||    
T  38277413 aatagaaccaatatattatgtgatcatcaatcatgatgtaatctcacttcacgtttttagccacatatcaacaaacacaaacatatatttttttaaactt 38277512  T
Q  130 taaagaacagaataaaacgtatatgcttataattaatttatac---tcactagaccaatcttgcttacaagcacggttat 206  Q
    ||||||||||||||||||||||||||||||||||||| |||||   ||||||||||||||||||||||||||||||||||    
T  38277513 taaagaacagaataaaacgtatatgcttataattaatgtatactgatcactagaccaatcttgcttacaagcacggttat 38277592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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