View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0742_low_7 (Length: 331)
Name: NF0742_low_7
Description: NF0742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0742_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 9 - 302
Target Start/End: Complemental strand, 49738588 - 49738295
Alignment:
| Q |
9 |
gaagaatatcaggtgacacagttcttattcaagatgccatgggagagaaggtatttctattaatgcataatcatttgatctaactatgataacaagattt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
49738588 |
gaagaatatcaggtgacacagttcttattcaagatgccatgggagagaaggtatttctattaatgcataatcatttgatctaactatgataacaagtttt |
49738489 |
T |
|
| Q |
109 |
aaggataatagcttattcttccttttttgggtgatatcttctcaggtaggaaaattcatacagtatgtgtcatcttttttaggaggtttagttgttgcat |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49738488 |
aaggataatagcttattcttccttttttgggtgatatcttctcaggtaggaaaattcatacagtatgtgtcatcttttttaggaggtttagttgttgcat |
49738389 |
T |
|
| Q |
209 |
tcatcaagggttggcttctaagccttgtccttctatcttctcttcctcttcttgtcctctctggttccataatgagctttgctttcgcaaagat |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49738388 |
tcatcaagggttggcttctaagccttgtccttctatcttctcttcctcttcttgtcctctctggttccataatgagctttgctttcgcaaagat |
49738295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 36284808 - 36284848
Alignment:
| Q |
21 |
gtgacacagttcttattcaagatgccatgggagagaaggta |
61 |
Q |
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| T |
36284808 |
gtgacacaattcttattcaagatgcaatgggtgagaaggta |
36284848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 145; Significance: 3e-76; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 9 - 298
Target Start/End: Original strand, 51211586 - 51211873
Alignment:
| Q |
9 |
gaagaatatcaggtgacacagttcttattcaagatgccatgggagagaaggtatttctattaatgcataatcatttgatctaactatgataacaagattt |
108 |
Q |
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||||||| |||||||| ||||||||||||||||| ||||||||||| ||||||| |||||| ||||||||||||||| |||||||||| ||| |
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| T |
51211586 |
gaagaatgtcaggtgatacagttcttattcaagaagccatgggagacaaggtatg------aatgcagcatcatttgatctaaccatgataacaaaattc |
51211679 |
T |
|
| Q |
109 |
aaggataatag---cttattcttccttttttgggtgatatcttct-caggtaggaaaattcatacagtatgtgtcatcttttttaggaggtttagttgtt |
204 |
Q |
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| ||||||| || |||||||||||||||| ||||| |||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
51211680 |
gaagataataataactcattcttccttttttggtggatatgttctgcaggtaggaaaattcatacaatatgtgtcatgttttttaggaggtttagttgtg |
51211779 |
T |
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| Q |
205 |
gcattcatcaagggttggcttctaagccttgtccttctatcttctcttcctcttcttgtcctctctggttccataatgagctttgctttcgcaa |
298 |
Q |
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| T |
51211780 |
gcattcatcttgggttggcttttaacccttgtccttctatcgtctattcctcttcttgtcctctctggttccataatgagctttgctttcgcaa |
51211873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 51198060 - 51198114
Alignment:
| Q |
9 |
gaagaatatcaggtgacacagttcttattcaagatgccatgggagagaaggtatt |
63 |
Q |
| |
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||||||| || ||||| || ||||||||||||||||||||||| ||||||||||| |
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|
| T |
51198060 |
gaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtatt |
51198114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 29938529 - 29938485
Alignment:
| Q |
18 |
caggtgacacagttcttattcaagatgccatgggagagaaggtat |
62 |
Q |
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|||||||||| ||||||||| ||||||||||||| |||||||||| |
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| T |
29938529 |
caggtgacactgttcttattaaagatgccatgggggagaaggtat |
29938485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 51144405 - 51144458
Alignment:
| Q |
9 |
gaagaatatcaggtgacacagttcttattcaagatgccatgggagagaaggtat |
62 |
Q |
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|
||||||| |||||||| || ||||||||| | ||||||||||| |||||||||| |
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| T |
51144405 |
gaagaatgtcaggtgatactgttcttattaaggatgccatgggtgagaaggtat |
51144458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 38568533 - 38568482
Alignment:
| Q |
11 |
agaatatcaggtgacacagttcttattcaagatgccatgggagagaaggtat |
62 |
Q |
| |
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||||| |||||||| || ||||||||||||||||||||||| |||||||||| |
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| T |
38568533 |
agaatgtcaggtgatactgttcttattcaagatgccatgggtgagaaggtat |
38568482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 38527234 - 38527181
Alignment:
| Q |
9 |
gaagaatatcaggtgacacagttcttattcaagatgccatgggagagaaggtat |
62 |
Q |
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||||||| || ||||| || ||||||||||||||||||||||| |||||||||| |
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| T |
38527234 |
gaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtat |
38527181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 5764247 - 5764298
Alignment:
| Q |
11 |
agaatatcaggtgacacagttcttattcaagatgccatgggagagaaggtat |
62 |
Q |
| |
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||||| || ||||||||| |||| |||||||||||||||||||| ||||||| |
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| T |
5764247 |
agaatgtctggtgacacaattctcattcaagatgccatgggagaaaaggtat |
5764298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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