View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0742_low_9 (Length: 308)
Name: NF0742_low_9
Description: NF0742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0742_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 9 - 246
Target Start/End: Complemental strand, 19755273 - 19755036
Alignment:
| Q |
9 |
gaagaatatgaagggggtccatctccggtcgaaggtggaaaaagtaaagaacctcgtgggttgaactctgaagatgatacaaagcacactgacactgatg |
108 |
Q |
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|||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19755273 |
gaagaaaatgaagggggtccatctctggtcgaaagtggaaaaagtaaagaacctcgtgggttgaactctgaagatgatacaaagcacactgacactgatg |
19755174 |
T |
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| Q |
109 |
gggaaggtcgtaaagaatatgtcaaagaatctaaagatgaatctaaacaagattctccaaagacaaaatctcctactccagtgacaaattctaccactgt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
19755173 |
gggaaggtcgtaaagaatatgtcaaagaatctaaagatgaatctaaacaagattctccaaagacaaaatctcctactcgagtgacaaattctaccagtgt |
19755074 |
T |
|
| Q |
209 |
gactataagtcaagaggagtttgatgtgctgaaagaac |
246 |
Q |
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||| |||||||||||||||||||||||||||||||||| |
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| T |
19755073 |
gacaataagtcaagaggagtttgatgtgctgaaagaac |
19755036 |
T |
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