View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0743_high_2 (Length: 772)
Name: NF0743_high_2
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 550; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 95 - 718
Target Start/End: Complemental strand, 3744689 - 3744073
Alignment:
| Q |
95 |
agtgtatgtgtgatggtctttgggggcagaagagtaccaggttgttttttaaggtcgtgcttgtgtgatggtatttggtttgatgtaataaaaattagta |
194 |
Q |
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| T |
3744689 |
agtgtatgtgtgatggtctttgggggcagaagagtactaggttgttttttaaggtcgtgcttgtgtgatggtatttggtttgatgtaataaaaattagta |
3744590 |
T |
|
| Q |
195 |
attttgatttgcaatgcagttattctgtttctgtgattgtgattgttcttgttctttgttcttgattttgaattagtaattgtggattaagagagggaaa |
294 |
Q |
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| T |
3744589 |
attttgatttgcaatgcagttattctgtttctgtgattttgattgttcttgttctt-------gattttgaattagtaattgtggattaagagagagaaa |
3744497 |
T |
|
| Q |
295 |
tatgatgtatttgattaaatttagcatatgttttcttgttttaagttggatattttattcactatgtcttgctacttttgacgcgataaatccttctacg |
394 |
Q |
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| T |
3744496 |
tatgatgtatttgattaaatttagcatatgttttcttgttttaagttggatattttattcgctatgtcttgctacttatgacgcgataaatccttctacg |
3744397 |
T |
|
| Q |
395 |
gaacgagctttgggctagcataattgatgattgataattcattgttcaaccatctcaggactatcaaataaatttataaaattatatatatttcaaaatt |
494 |
Q |
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| T |
3744396 |
gaacgagctttgagctagcataattgatgattgataattcattgttcaaccatctcaggactatcaaataaatttatgaaattatagatatttcaaaatt |
3744297 |
T |
|
| Q |
495 |
ttactgagtttgaagactaagctttgcacaagagaaagcacatgacatagatatagggacagtgatacatcatttgggatgctacgggataaaacgtttt |
594 |
Q |
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| T |
3744296 |
ttactgagtttgaagactaagctttacacaagagaaagcacatggcatagatataggaacagtgatacatcatttgggatgctacgggataaaacgtttt |
3744197 |
T |
|
| Q |
595 |
tgctatgtttcaataatgctaaacatagcgttttatcccgaatgatgtgtcactgtttctatctatgccatatgctttctcttgtgcaaagcttctctgt |
694 |
Q |
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| T |
3744196 |
tgctatgtttcaataatgctaaacatagcgttttatcccgaatgatgtgtcactgtttcaatctatgccatatgctttctcttgtgcaaagcttctctgt |
3744097 |
T |
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| Q |
695 |
tccatattccaaaaatcttctctg |
718 |
Q |
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| T |
3744096 |
tccatattccaaaaatcttctctg |
3744073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 629 - 688
Target Start/End: Original strand, 3744217 - 3744278
Alignment:
| Q |
629 |
atcccgaatgatgtgtcactgtttctat--ctatgccatatgctttctcttgtgcaaagctt |
688 |
Q |
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| T |
3744217 |
atcccaaatgatgtatcactgttcctatatctatgccatgtgctttctcttgtgtaaagctt |
3744278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 721 - 764
Target Start/End: Complemental strand, 15702617 - 15702574
Alignment:
| Q |
721 |
cctccacaaaacctcatctgttctcaacaggttgtctctctgct |
764 |
Q |
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| T |
15702617 |
cctccacaaaaccttatctgttctcaacaggttgtctctctgct |
15702574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 653 - 696
Target Start/End: Complemental strand, 20196286 - 20196243
Alignment:
| Q |
653 |
ctatctatgccatatgctttctcttgtgcaaagcttctctgttc |
696 |
Q |
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| T |
20196286 |
ctatctatgccacatgctttctcttgtgcaaaacttctttgttc |
20196243 |
T |
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