View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0743_high_24 (Length: 453)
Name: NF0743_high_24
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 38 - 242
Target Start/End: Complemental strand, 3458371 - 3458167
Alignment:
| Q |
38 |
aaggtgtcactgatgctgaggataaaaaacagaaggttgtatgcatggagcgatatcgtagaagagaagatgaggagcacaaacaattctcagacataga |
137 |
Q |
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| T |
3458371 |
aaggtgtcactgatgctgaggataaaaaacagaaggttgtatgcatggagcggtatcgtagaagagaagatgaggagcacaaacaattctcagacataga |
3458272 |
T |
|
| Q |
138 |
ctttgaaagagaagaagagtgtggaatatgtatggagatgaatagtaagattgtgttgcctaactgcaaccatgtcatgtgcctgaaatgttaccatgaa |
237 |
Q |
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| T |
3458271 |
ctttgaaagagaagaagagtgtggaatatgtatggagatgaatagtaagattgtgttgcctaactgcaaccatgtcatgtgcctgaaatgttaccatgaa |
3458172 |
T |
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| Q |
238 |
tggta |
242 |
Q |
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||||| |
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| T |
3458171 |
tggta |
3458167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 307 - 408
Target Start/End: Complemental strand, 3458130 - 3458029
Alignment:
| Q |
307 |
ccttattttacgatcatggcttattggttttaagaagtatgaagtttggctttgtttctgctttctctgcatcttgattctttgtatttcttcagcaata |
406 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3458130 |
ccttattttacgatcatggcttgttggttttaagaagtatgaagtttggctttgtttctgctttctctgcatcttgattctttgtatttcttcagcaata |
3458031 |
T |
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| Q |
407 |
tg |
408 |
Q |
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|| |
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| T |
3458030 |
tg |
3458029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 8e-31; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 38 - 242
Target Start/End: Complemental strand, 35542802 - 35542598
Alignment:
| Q |
38 |
aaggtgtcactgatgctgaggataaaaaacagaaggttgtatgcatggagcgatatcgtagaagagaagatgaggagcacaaacaattctcagacataga |
137 |
Q |
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||||||| ||||| ||||||||||||| || |||| ||||||||||||| | |||||||||||||| ||||| || | |||| || |||||||| |
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| T |
35542802 |
aaggtgttactgactctgaggataaaaagcaaaaggctgtatgcatggagaggtatcgtagaagagatgatgatgactgtaggcaatcttctgacataga |
35542703 |
T |
|
| Q |
138 |
ctttgaaagagaagaagagtgtggaatatgtatggagatgaatagtaagattgtgttgcctaactgcaaccatgtcatgtgcctgaaatgttaccatgaa |
237 |
Q |
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|||||||||| || || ||||| ||||| ||||||||||||||||| ||||||||||||||||| || ||||| |||||||| || ||||||| ||| |
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| T |
35542702 |
tattgaaagagacgatgaatgtgggatatgcatggagatgaatagtaaaattgtgttgcctaactgtaatcatgttatgtgcctcaagtgttaccgagaa |
35542603 |
T |
|
| Q |
238 |
tggta |
242 |
Q |
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||||| |
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|
| T |
35542602 |
tggta |
35542598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 438
Target Start/End: Original strand, 19419788 - 19419826
Alignment:
| Q |
400 |
agcaatatgagtaagctccacactacacattcttgggat |
438 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |
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| T |
19419788 |
agcaaaatgagtaagctccacactacacattcttgggat |
19419826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 438
Target Start/End: Original strand, 19426494 - 19426532
Alignment:
| Q |
400 |
agcaatatgagtaagctccacactacacattcttgggat |
438 |
Q |
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||||| || |||||||||||||||||||||||||||||| |
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| T |
19426494 |
agcaaaataagtaagctccacactacacattcttgggat |
19426532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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