View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0743_high_29 (Length: 444)
Name: NF0743_high_29
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_high_29 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 352; Significance: 0; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 7 - 415
Target Start/End: Original strand, 13872301 - 13872715
Alignment:
| Q |
7 |
tagattatacttctctcacagccgaacttcagattactcgggctctctt-----gaaactggagggttnnnnnnnnn-tgcacacaaaaatcaatataga |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||| |
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|
| T |
13872301 |
tagactatacttctctcacagccgaacttcagattactcaggctctcttagcttgaaactggagggttaaaaaaaaaatgcacacaaaaatcaatataga |
13872400 |
T |
|
| Q |
101 |
ctcgtagcaattggctatattatataatattggactctaaagactcgagtatattataaattcagctattgtgaatgtaacaacacacaacaatcaatca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13872401 |
ctcgtagcaattggctatattatataatattggactctaaagactcgagtatattataaattcagctattgtgaatgtaacaacacacaacaatcaatca |
13872500 |
T |
|
| Q |
201 |
aattacaaatatatcttgataaataacttgtgatcgatgaccacaatgccaatgatgaatccatcttgtttgaaattgatacaaacaatatttctcatgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13872501 |
aattacaaatatatcttgataaataacttgtgatcgatgaccacaatgccaatgatgaatccatcttgtttgaaattgatacaaacaatatttctcatgt |
13872600 |
T |
|
| Q |
301 |
gtttggcgttgcaagcagaccttgtttgttcaaaagaggttgttaggtgcatacaaagtgagagacaggcactccttaaattcaaggctggccttattga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13872601 |
gtttggcgttgcaagcagaccttgtttgttcaaaagaggttgttaggtgcatacaaagtgagagacaggcactccttaaattcaaggctggccttattga |
13872700 |
T |
|
| Q |
401 |
tgtgaatggcatgtt |
415 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
13872701 |
tgtgaatggcatgtt |
13872715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 152 - 415
Target Start/End: Original strand, 13470228 - 13470487
Alignment:
| Q |
152 |
tattataaattcagctattgtgaatgtaacaacacacaacaatcaatcaaattacaaatatatcttgataaataacttgtgatcgatgaccacaatgcca |
251 |
Q |
| |
|
|||||||||||||||||||| |||| || | ||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||| || |
|
|
| T |
13470228 |
tattataaattcagctattggcaatgaaagagcacacaacaataaatcaaattacaaatatatcttgatacataacttgt----catgaccacaatgtca |
13470323 |
T |
|
| Q |
252 |
atgatgaatccatcttgtttgaaattgatacaaacaatatttctcatgtgtttggcgttgcaagcagaccttgtttgttcaaaagaggttgttaggtgca |
351 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||||||| ||||||| |||||||||| | |||||||||||||| | ||||| ||||||| |
|
|
| T |
13470324 |
atgatgaatccattttgtttgaaattgagtcaaacaatatttctcatctgtttggtgttgcaagcatattttgtttgttcaaaaaaagttgtcaggtgca |
13470423 |
T |
|
| Q |
352 |
tacaaagtgagagacaggcactccttaaattcaaggctggccttattgatgtgaatggcatgtt |
415 |
Q |
| |
|
||||||||||||| |||||||| ||| |||||||||||| ||||||||||| |||||||||| |
|
|
| T |
13470424 |
tacaaagtgagaggcaggcacttcttcaattcaaggctgcccttattgatgactatggcatgtt |
13470487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 152 - 404
Target Start/End: Complemental strand, 14113240 - 14112987
Alignment:
| Q |
152 |
tattataaattcagctattgtgaatg----taacaacacacaacaatcaatcaaattacaaatatatcttgataaataa-cttgtgatcgatgaccacaa |
246 |
Q |
| |
|
||||||||||||||||||||| |||| ||| |||||||||| |||||||||||||| | |||||||| || | || |||||||| |||||||| |
|
|
| T |
14113240 |
tattataaattcagctattgtcaatgcaattaagtacacacaacattcaatcaaattacatacatatcttgctacagaaacttgtgat----gaccacaa |
14113145 |
T |
|
| Q |
247 |
tgccaatgatgaatccatcttgtttgaaattgatacaaacaatatttctcatgtgtttggcgttgcaagcagaccttgtttgttcaaaagaggttgttag |
346 |
Q |
| |
|
|| |||||||| |||||| ||||||||||||||| |||| |||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
14113144 |
tgtcaatgatggatccattttgtttgaaattgattcaaatcctatttctcatgtctttggtgttgcaagcagaccttgtttgttcaaaagaggctgttag |
14113045 |
T |
|
| Q |
347 |
gtgcatacaaagtgagagacaggcactccttaaattcaaggctggccttattgatgtg |
404 |
Q |
| |
|
|||||||||||||||||| |||||||| || |||||||||||||||||| ||||||| |
|
|
| T |
14113044 |
gtgcatacaaagtgagaggcaggcacttctacaattcaaggctggccttactgatgtg |
14112987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 150 - 401
Target Start/End: Complemental strand, 14087386 - 14087136
Alignment:
| Q |
150 |
tatattataaattcagctattgtgaatgtaacaacacacaacaatcaatcaaattacaaatatatcttgataaataacttgtgatcgatgaccacaatgc |
249 |
Q |
| |
|
|||||||||||||||||||||| |||| || ||||| |||||||||||||||||||| | ||||||||||| ||||||||| ||||||||| || |
|
|
| T |
14087386 |
tatattataaattcagctattggcaatgcaagaacacgcaacaatcaatcaaattacatacatatcttgatacataacttgt----catgaccacattgt |
14087291 |
T |
|
| Q |
250 |
caatgatgaatccatcttgtttgaaattgatacaaacaatatttctcatgtgtttggcgttgcaagcagac---cttgtttgttcaaaagaggttgttag |
346 |
Q |
| |
|
|||| ||||||| || ||||||||||||| | ||||||||||||||||| | ||||| |||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
14087290 |
caatcatgaatctattttgtttgaaattggtccaaacaatatttctcatatatttggtgttgcaagtagaccagcttgtttgttcaaaagaggttgttag |
14087191 |
T |
|
| Q |
347 |
gtgcatacaaagtgaga-gacaggcactccttaaattcaaggctggccttattgat |
401 |
Q |
| |
|
||||||||||||||||| |||| ||||| ||| |||| ||||||| ||||| |||| |
|
|
| T |
14087190 |
gtgcatacaaagtgagaggaca-gcacttcttcaatttaaggctgcccttactgat |
14087136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 183 - 400
Target Start/End: Complemental strand, 14027811 - 14027595
Alignment:
| Q |
183 |
acacacaacaatcaatcaaattacaaatatatcttgataaataacttgtgatcgatgaccacaatgccaatgatgaatccatcttgtttgaaattgatac |
282 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| | |||||||||||| |||||||||| |||| |||||||||| || | |||||||||| | |
|
|
| T |
14027811 |
acacacaacaatcaatcaaattacaaacatatcttgacacataacttgtgat----gaccacaatgtcaattatgaatccattttctatgaaattgattc |
14027716 |
T |
|
| Q |
283 |
aaacaatatttctcatgtgtttggcgttgcaagcagacc---ttgtttgttcaaaagaggttgttaggtgcatacaaagtgagagacaggcactccttaa |
379 |
Q |
| |
|
|| | ||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| | |
|
|
| T |
14027715 |
aagccatatttctcatatgtttggtgttgcaagcagaccagtttgtttgttcaaaagaggttgttagatgcattcaaagtgagaggcaggcactcctgca |
14027616 |
T |
|
| Q |
380 |
attcaaggctggccttattga |
400 |
Q |
| |
|
||||||| ||||||| |||| |
|
|
| T |
14027615 |
attcaagtttggccttgttga |
14027595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 153 - 402
Target Start/End: Complemental strand, 14049616 - 14049380
Alignment:
| Q |
153 |
attataaattcagctattgtgaatgtaacaacacacaacaatcaatcaaattacaaatatatcttgataaataacttgtgatcgatgaccacaatgccaa |
252 |
Q |
| |
|
||||||||||||| ||||| ||||||| ||||||| ||||||||||||||||||||||||||||| || |||||||||||| ||| |
|
|
| T |
14049616 |
attataaattcagttattggaaatgtaagaacacactacaatcaatcaaattacaaatatatcttg---------------tc-atgaccacaatgtcaa |
14049533 |
T |
|
| Q |
253 |
tgatgaatccatcttgtttgaaattgatacaaacaatatttctcatgtgtttggcgttgcaagcagacc---ttgtttgttcaaaagaggttgttaggtg |
349 |
Q |
| |
|
| |||||||||| |||||| |||||||| |||| ||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||| ||||| |
|
|
| T |
14049532 |
tcatgaatccattttgttttaaattgattcaaatcatatttctcatgtgtttggtgttgcaagcagaccagcttgtttgctcaaaagaggttgtcaggtg |
14049433 |
T |
|
| Q |
350 |
catacaaagtgagagacaggcactccttaaattcaaggctggccttattgatg |
402 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||| ||||||||||||||| |
|
|
| T |
14049432 |
catacaaagtgagagacaggcacttctgcaattcaagtctggccttattgatg |
14049380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 183 - 402
Target Start/End: Complemental strand, 13943708 - 13943490
Alignment:
| Q |
183 |
acacacaacaatcaatcaaattacaaatatatcttgataaataacttgtgatcgatgaccacaatgccaatgatgaatccatcttgtttgaaattgatac |
282 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||| | |||||||||||| |||||||||| |||| ||||||| | |||||| |||||||| | |
|
|
| T |
13943708 |
acacacaacattcaatcaaattacaaacatatcttgacacataacttgtgat----gaccacaatgtcaattatgaatcaactttgttttaaattgattc |
13943613 |
T |
|
| Q |
283 |
aaacaatatttctcatgtgtttggcgttgcaagcagacc---ttgtttgttcaaaagaggttgttaggtgcatacaaagtgagagacaggcactccttaa |
379 |
Q |
| |
|
||| |||||||||||||||||| ||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||| || ||||| || | |
|
|
| T |
13943612 |
aaatcatatttctcatgtgtttgttgtttcaagcataccaacttgtttgttcaaaagaggttgttaggtgcatacaaagtgagaggcaagcacttctaca |
13943513 |
T |
|
| Q |
380 |
attcaaggctggccttattgatg |
402 |
Q |
| |
|
|||||| |||||||||||||||| |
|
|
| T |
13943512 |
attcaaagctggccttattgatg |
13943490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 255 - 402
Target Start/End: Complemental strand, 14000576 - 14000429
Alignment:
| Q |
255 |
atgaatccatcttgtttgaaattgatacaaacaatatttctcatgtgtttggcgttgcaagcagaccttgtttgttcaaaagaggttgttaggtgcatac |
354 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||| |||||| |||||| ||||||||||| ||||||| |
|
|
| T |
14000576 |
atgaatccattttgtttgaaattgattcaaacaatatttctcatctgtttggtgttgcaagcagactttgtttattcaaaggaggttgttagatgcatac |
14000477 |
T |
|
| Q |
355 |
aaagtgagagacaggcactccttaaattcaaggctggccttattgatg |
402 |
Q |
| |
|
|||||||||| | ||||| ||| |||||||||||||||||||||||| |
|
|
| T |
14000476 |
aaagtgagaggaaagcacttcttcaattcaaggctggccttattgatg |
14000429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 236 - 404
Target Start/End: Original strand, 13860399 - 13860570
Alignment:
| Q |
236 |
gatgaccacaatgccaatgatgaatccatcttgtttgaaattgatacaaacaatatttctcatgtgtttggcgttgcaagcagacc---ttgtttgttca |
332 |
Q |
| |
|
|||||||| |||| |||| |||||||||| || | | |||||||| ||| | ||||||||||| ||||||| ||||||||| |||| ||||||||||| |
|
|
| T |
13860399 |
gatgaccaaaatgtcaattatgaatccattttctattaaattgattcaagccatatttctcatatgtttggtgttgcaagctgaccagcttgtttgttca |
13860498 |
T |
|
| Q |
333 |
aaagaggttgttaggtgcatacaaagtgagagacaggcactccttaaattcaaggctggccttattgatgtg |
404 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||| || || |||||||||||||||||| ||||||| |
|
|
| T |
13860499 |
aaagagtttgttaggtgcatacaaagtgagaggcaggcgcttctacaattcaaggctggccttactgatgtg |
13860570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 236 - 415
Target Start/End: Complemental strand, 14017721 - 14017539
Alignment:
| Q |
236 |
gatgaccacaatgccaatgatgaatccatcttgtttgaaattgatacaaacaatatttctcatgtgtttggcgttgcaagcagac---cttgtttgttca |
332 |
Q |
| |
|
||||||||||||| |||| |||||||||| |||||| |||||||| |||| ||||||||||||||||||| ||| ||||||||| ||| |||||||| |
|
|
| T |
14017721 |
gatgaccacaatgtcaattatgaatccattttgttttaaattgattcaaatcatatttctcatgtgtttggtgtttcaagcagaccaacttatttgttca |
14017622 |
T |
|
| Q |
333 |
aaagaggttgttaggtgcatacaaagtgagagacaggcactccttaaattcaaggctggccttattgatgtgaatggcatgtt |
415 |
Q |
| |
|
|||||||||||||| || || ||||||||||| ||||||| || | |||||| ||||||| |||||| | ||||||||| |
|
|
| T |
14017621 |
aaagaggttgttagatgtattcaaagtgagaggaaggcacttctacagttcaagtatggccttgttgatgagtttggcatgtt |
14017539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 242 - 396
Target Start/End: Original strand, 13890395 - 13890552
Alignment:
| Q |
242 |
cacaatgccaatgatgaatccatcttgtttgaaattgata---caaacaatatttctcatgtgtttggcgttgcaagcagaccttgtttgttcaaaagag |
338 |
Q |
| |
|
||||||| |||| ||||| |||| |||||||||||| || ||||| |||||| | | | ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
13890395 |
cacaatgacaataatgaacccattttgtttgaaattaattattcaaaccatatttttaacgcttttggtgttgcaagcagaccttgtttgttcaaaagag |
13890494 |
T |
|
| Q |
339 |
gttgttaggtgcatacaaagtgagagacaggcactccttaaattcaaggctggcctta |
396 |
Q |
| |
|
||||||| ||||| ||||||||||| || ||||| ||| ||||||||||||| |||| |
|
|
| T |
13890495 |
gttgttaaatgcattcaaagtgagaggcatgcacttcttcaattcaaggctggtctta |
13890552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 50122331 - 50122367
Alignment:
| Q |
7 |
tagattatacttctctcacagccgaacttcagattac |
43 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||| |
|
|
| T |
50122331 |
tagattatatttatctcacagccgaacttcagattac |
50122367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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