View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0743_high_33 (Length: 434)
Name: NF0743_high_33
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_high_33 |
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| [»] scaffold0256 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-125; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 66 - 380
Target Start/End: Original strand, 16832485 - 16832798
Alignment:
| Q |
66 |
ctattgtacttcaaaactgatcaactatgtaaaga--taaataatctgcctaaactgcagttcagattgagaaacctctgatcatgggcacatagtgaag |
163 |
Q |
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| T |
16832485 |
ctattgtacttcaagacttatcaaccatgtaaagagataaataatctgcctaaactgcagttcagattgagaaacctctgatcatgggcacatagtgaag |
16832584 |
T |
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| Q |
164 |
aagatgatcgacgaaaacgccaaaagccttggaagaacgagaaaatgaaaacgggagaaggttagggccagggtcacgtgcaaacttaaatgaattaatg |
263 |
Q |
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| T |
16832585 |
aaggtgatcgacgaaaatgccaaaagcctttgaagaacgagaaaatgaagacgggttaaggttagggccagggtcacctgcaaactgaaatgaattaatg |
16832684 |
T |
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| Q |
264 |
cgagtctttgattatgcattatgcttatagtacttgggcaatactcaactaaaatacatataacaacaaaagtttgaatgtgattagaataaagaggaaa |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||| |
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| T |
16832685 |
cgagtctttgattatgcattatgcttatagtacttgggaaatactcaactaaaatacatat---aacaaaagtttttatgtgattagaataaaaaggaaa |
16832781 |
T |
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| Q |
364 |
agccaaaacctctagaa |
380 |
Q |
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|||||||||| |||||| |
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| T |
16832782 |
agccaaaacccctagaa |
16832798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 130
Target Start/End: Complemental strand, 16873852 - 16873797
Alignment:
| Q |
75 |
ttcaaaactgatcaactatgtaaagataaataatctgcctaaactgcagttcagat |
130 |
Q |
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| T |
16873852 |
ttcaaaactgatcaaccatgtaaagagaaataatgtgcctaaactgcacttcagat |
16873797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 75 - 130
Target Start/End: Complemental strand, 16571897 - 16571842
Alignment:
| Q |
75 |
ttcaaaactgatcaactatgtaaagataaataatctgcctaaactgcagttcagat |
130 |
Q |
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| T |
16571897 |
ttcaaaactgataaaccatgtaaagagaaataatgtgcctaatctgcagttcagat |
16571842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 329
Target Start/End: Complemental strand, 16573400 - 16573347
Alignment:
| Q |
275 |
ttatgcattatgcttatagtacttgggcaatactcaact-aaaatacatataacaa |
329 |
Q |
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||||||||| |||||| ||||||||| ||||||||||| |||||||||||||||| |
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| T |
16573400 |
ttatgcattgtgctta--gtacttgggaaatactcaactgaaaatacatataacaa |
16573347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 130
Target Start/End: Original strand, 11866 - 11921
Alignment:
| Q |
75 |
ttcaaaactgatcaactatgtaaagataaataatctgcctaaactgcagttcagat |
130 |
Q |
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| T |
11866 |
ttcaaaactgatcaaccgtgtaaagagtaataatgtgcctaaactgcaattcagat |
11921 |
T |
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