View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0743_high_36 (Length: 417)

Name: NF0743_high_36
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0743_high_36
NF0743_high_36
[»] chr7 (30 HSPs)
chr7 (29-341)||(29175686-29175981)
chr7 (164-253)||(13882686-13882775)
chr7 (164-250)||(13886159-13886245)
chr7 (196-279)||(24840117-24840201)
chr7 (163-253)||(859155-859245)
chr7 (163-253)||(1217159-1217249)
chr7 (188-279)||(1369779-1369871)
chr7 (188-272)||(11000849-11000934)
chr7 (198-279)||(27142640-27142722)
chr7 (186-279)||(27309636-27309730)
chr7 (191-280)||(3778735-3778824)
chr7 (163-272)||(4888685-4888793)
chr7 (188-280)||(1365645-1365737)
chr7 (188-279)||(5934578-5934670)
chr7 (163-266)||(7803030-7803133)
chr7 (164-280)||(2767904-2768015)
chr7 (177-253)||(1220453-1220529)
chr7 (177-272)||(1786664-1786760)
chr7 (189-272)||(11228962-11229046)
chr7 (188-272)||(30217796-30217879)
chr7 (164-266)||(1874525-1874627)
chr7 (196-261)||(1753629-1753695)
chr7 (188-261)||(1883481-1883555)
chr7 (191-272)||(6451776-6451858)
chr7 (188-264)||(13466720-13466797)
chr7 (192-279)||(8916404-8916492)
chr7 (229-279)||(1690196-1690246)
chr7 (203-246)||(8063842-8063885)
chr7 (188-270)||(11228704-11228787)
chr7 (196-279)||(4133305-4133389)
[»] chr2 (32 HSPs)
chr2 (162-253)||(27952316-27952407)
chr2 (164-253)||(22011436-22011525)
chr2 (188-279)||(23457620-23457712)
chr2 (164-250)||(2155970-2156056)
chr2 (164-266)||(36647280-36647381)
chr2 (164-253)||(27956154-27956243)
chr2 (164-253)||(31636337-31636426)
chr2 (164-270)||(15129373-15129478)
chr2 (164-250)||(31634107-31634193)
chr2 (188-279)||(33051592-33051684)
chr2 (189-279)||(32161993-32162084)
chr2 (164-253)||(33655628-33655716)
chr2 (188-280)||(12966450-12966542)
chr2 (185-279)||(5171605-5171700)
chr2 (185-279)||(18945934-18946029)
chr2 (162-236)||(2165911-2165985)
chr2 (185-279)||(21772349-21772443)
chr2 (219-281)||(36648939-36649001)
chr2 (164-281)||(1518165-1518281)
chr2 (220-281)||(36615182-36615243)
chr2 (204-280)||(4184902-4184979)
chr2 (188-279)||(28737811-28737903)
chr2 (188-248)||(28737911-28737971)
chr2 (192-263)||(32163798-32163870)
chr2 (198-279)||(23456549-23456631)
chr2 (186-279)||(33053391-33053485)
chr2 (219-280)||(12123951-12124012)
chr2 (223-289)||(31636271-31636338)
chr2 (188-272)||(8294559-8294644)
chr2 (252-302)||(33655548-33655598)
chr2 (197-249)||(1218319-1218372)
chr2 (187-235)||(29715168-29715217)
[»] chr3 (17 HSPs)
chr3 (162-280)||(2472687-2472804)
chr3 (164-253)||(3063737-3063826)
chr3 (163-253)||(43303959-43304049)
chr3 (164-253)||(43306672-43306761)
chr3 (164-253)||(5128909-5128998)
chr3 (183-304)||(45168338-45168462)
chr3 (164-253)||(3068875-3068964)
chr3 (187-249)||(5324654-5324717)
chr3 (162-270)||(365591-365698)
chr3 (364-412)||(48767473-48767521)
chr3 (244-340)||(19795132-19795231)
chr3 (185-279)||(41152524-41152619)
chr3 (185-255)||(52708842-52708913)
chr3 (185-251)||(35908506-35908572)
chr3 (188-272)||(8536392-8536481)
chr3 (239-271)||(1320124-1320156)
chr3 (188-255)||(33175833-33175901)
[»] chr8 (28 HSPs)
chr8 (164-253)||(22921850-22921939)
chr8 (183-281)||(18468621-18468719)
chr8 (164-281)||(2189722-2189838)
chr8 (164-253)||(6845336-6845425)
chr8 (164-253)||(22512046-22512135)
chr8 (164-253)||(22519346-22519435)
chr8 (164-253)||(22926648-22926737)
chr8 (164-253)||(42891664-42891753)
chr8 (161-253)||(37189866-37189958)
chr8 (164-253)||(22520799-22520888)
chr8 (172-253)||(23570584-23570665)
chr8 (188-279)||(26374874-26374965)
chr8 (198-279)||(20693773-20693855)
chr8 (163-279)||(24731201-24731317)
chr8 (177-279)||(14130139-14130241)
chr8 (188-279)||(2687716-2687808)
chr8 (188-251)||(42890394-42890457)
chr8 (187-272)||(24578799-24578885)
chr8 (220-281)||(2188397-2188458)
chr8 (185-279)||(16598222-16598318)
chr8 (188-279)||(24731006-24731098)
chr8 (205-279)||(2689121-2689195)
chr8 (252-339)||(18180802-18180892)
chr8 (188-279)||(25479427-25479520)
chr8 (219-272)||(2609550-2609603)
chr8 (196-253)||(23573583-23573640)
chr8 (163-223)||(26378031-26378090)
chr8 (219-279)||(24577583-24577643)
[»] chr6 (22 HSPs)
chr6 (164-253)||(3536034-3536123)
chr6 (164-253)||(3542245-3542334)
chr6 (168-253)||(29340810-29340895)
chr6 (164-249)||(30049920-30050005)
chr6 (164-280)||(27822118-27822234)
chr6 (188-279)||(1127228-1127320)
chr6 (185-280)||(11658905-11659000)
chr6 (164-249)||(30052207-30052292)
chr6 (188-279)||(8048989-8049080)
chr6 (188-281)||(14238408-14238502)
chr6 (162-216)||(29342061-29342115)
chr6 (200-280)||(12882096-12882177)
chr6 (187-280)||(32361342-32361434)
chr6 (191-272)||(33615530-33615612)
chr6 (188-272)||(33215186-33215271)
chr6 (188-270)||(18727089-18727173)
chr6 (223-279)||(24443130-24443186)
chr6 (218-281)||(12778453-12778516)
chr6 (167-279)||(18727846-18727960)
chr6 (188-266)||(22873801-22873880)
chr6 (223-289)||(3535968-3536035)
chr6 (223-289)||(3542179-3542246)
[»] chr1 (26 HSPs)
chr1 (163-253)||(8931220-8931310)
chr1 (163-253)||(50857443-50857533)
chr1 (163-279)||(12944090-12944206)
chr1 (188-279)||(43681435-43681528)
chr1 (163-280)||(31915523-31915639)
chr1 (202-281)||(33152756-33152836)
chr1 (188-270)||(28660769-28660852)
chr1 (164-250)||(13443988-13444074)
chr1 (188-279)||(10927168-10927258)
chr1 (195-279)||(50713687-50713772)
chr1 (188-271)||(31913359-31913442)
chr1 (188-279)||(239661-239753)
chr1 (196-279)||(8221462-8221546)
chr1 (188-279)||(10928263-10928355)
chr1 (192-279)||(21903726-21903813)
chr1 (164-272)||(23987553-23987665)
chr1 (188-265)||(10925728-10925803)
chr1 (164-280)||(40058102-40058219)
chr1 (190-272)||(8967828-8967912)
chr1 (170-231)||(13441612-13441673)
chr1 (188-279)||(9030991-9031083)
chr1 (188-253)||(28661091-28661157)
chr1 (248-289)||(8931154-8931195)
chr1 (196-281)||(26981481-26981568)
chr1 (235-279)||(36694224-36694268)
chr1 (235-279)||(36710325-36710369)
[»] chr5 (10 HSPs)
chr5 (165-253)||(21848966-21849054)
chr5 (163-253)||(40778785-40778875)
chr5 (188-280)||(492540-492633)
chr5 (159-268)||(8456375-8456483)
chr5 (211-340)||(19497351-19497483)
chr5 (188-279)||(22440832-22440923)
chr5 (185-279)||(26140317-26140412)
chr5 (191-279)||(18252390-18252479)
chr5 (198-260)||(9868438-9868501)
chr5 (163-197)||(21844436-21844470)
[»] scaffold0110 (2 HSPs)
scaffold0110 (164-289)||(46733-46859)
scaffold0110 (164-253)||(45262-45351)
[»] chr4 (24 HSPs)
chr4 (164-253)||(6659331-6659419)
chr4 (193-279)||(18689549-18689636)
chr4 (188-279)||(13991402-13991494)
chr4 (165-255)||(7723665-7723753)
chr4 (164-270)||(24667640-24667745)
chr4 (164-280)||(40206122-40206237)
chr4 (188-279)||(7724100-7724189)
chr4 (198-279)||(38888023-38888105)
chr4 (199-279)||(10494877-10494958)
chr4 (192-279)||(7634054-7634142)
chr4 (188-279)||(22486799-22486889)
chr4 (197-279)||(18657074-18657157)
chr4 (189-279)||(15848379-15848469)
chr4 (160-280)||(19935460-19935579)
chr4 (188-254)||(54700620-54700687)
chr4 (219-279)||(9260547-9260607)
chr4 (186-279)||(3675085-3675179)
chr4 (219-272)||(13990732-13990785)
chr4 (255-340)||(13085214-13085302)
chr4 (188-279)||(17254906-17254998)
chr4 (196-279)||(21433594-21433678)
chr4 (195-270)||(28897954-28898032)
chr4 (188-247)||(50515918-50515978)
chr4 (187-279)||(53477234-53477329)
[»] scaffold0251 (1 HSPs)
scaffold0251 (188-279)||(9676-9769)
[»] scaffold0054 (2 HSPs)
scaffold0054 (192-279)||(37686-37772)
scaffold0054 (200-271)||(49304-49375)
[»] scaffold0240 (3 HSPs)
scaffold0240 (188-280)||(1631-1723)
scaffold0240 (188-281)||(14819-14912)
scaffold0240 (191-279)||(16021-16109)
[»] scaffold0024 (2 HSPs)
scaffold0024 (188-280)||(145707-145800)
scaffold0024 (219-266)||(143975-144022)
[»] scaffold0330 (1 HSPs)
scaffold0330 (188-280)||(17613-17705)
[»] scaffold0531 (1 HSPs)
scaffold0531 (188-248)||(11612-11672)
[»] scaffold0236 (1 HSPs)
scaffold0236 (174-261)||(16390-16476)
[»] scaffold0184 (1 HSPs)
scaffold0184 (214-277)||(14175-14238)
[»] scaffold0090 (1 HSPs)
scaffold0090 (192-279)||(15092-15179)
[»] scaffold0078 (1 HSPs)
scaffold0078 (214-277)||(58606-58669)


Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 29 - 341
Target Start/End: Complemental strand, 29175981 - 29175686
Alignment:
Q  29 caacggtggttcgattgtattcttatgtcaagggttaattagtatttattttctttactaatgcatgcaattgaacattacttctttagtccataatgta 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29175981 caacggtggttcgattgtattcttatgtcaagggttaattagtatttattttctttactaatgcatgcaattgaacattacttctttagtccataatgta 29175882  T
Q  129 atgcttatcttaaaattgtttctacctaagataattgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaa 228  Q
    ||||||||||||||||||||| ||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29175881 atgcttatcttaaaattgtttatacctaagataattgactcactacggaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaa 29175782  T
Q  229 gcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaaaatcttgaatgagtttattgaataattgcctcttaggctacataatgtt 328  Q
    || ||                 ||||  ||||||||||||||||||||||||||||| ||| | ||||||||||| || ||||||||| |||||||||||    
T  29175781 gctac-----------------gttcttgaatccaccagaaattaagaaaaaatcttaaataattttattgaatagttacctcttaggttacataatgtt 29175699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 164 - 253
Target Start/End: Original strand, 13882686 - 13882775
Alignment:
Q  164 tgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggtt 253  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||    
T  13882686 tgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 13882775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 164 - 250
Target Start/End: Original strand, 13886159 - 13886245
Alignment:
Q  164 tgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagg 250  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||    
T  13886159 tgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagg 13886245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 196 - 279
Target Start/End: Complemental strand, 24840201 - 24840117
Alignment:
Q  196 gctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  24840201 gctaaacctagattgaaaagaaacaagtttgcaagcgacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaa 24840117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 163 - 253
Target Start/End: Original strand, 859155 - 859245
Alignment:
Q  163 ttgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggtt 253  Q
    |||||||| |||| ||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||    
T  859155 ttgacgcaatacggaagcgtaggattagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 859245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 163 - 253
Target Start/End: Original strand, 1217159 - 1217249
Alignment:
Q  163 ttgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggtt 253  Q
    |||||||| |||| ||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||    
T  1217159 ttgacgcaatacggaagcgtaggattagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 1217249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 188 - 279
Target Start/End: Complemental strand, 1369871 - 1369779
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||| ||| |||| |||||||||||||||||||||||||||||| ||||||    
T  1369871 tagcaagcgttaaacctagattgaaaagaaacaagtttgcaagcgataaacttgttaaaatagggttccggaatccaccagaaattgagaaaa 1369779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 11000849 - 11000934
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaatt 272  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||| | ||||||||||||||| |||||||||||||||||    
T  11000849 tagcaagcgctaaacctagattgaaaagaaacaagttcgcaagcgacaaactagtgaaaatagggttcaggaatccaccagaaatt 11000934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 198 - 279
Target Start/End: Complemental strand, 27142722 - 27142640
Alignment:
Q  198 taaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||| |||||||||||| ||||||    
T  27142722 taaacctagattgaaaagaaacaagtttgcaagcgacaaacttgtgaaaatagggttcctgaaaccaccagaaattgagaaaa 27142640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 186 - 279
Target Start/End: Original strand, 27309636 - 27309730
Alignment:
Q  186 gttagcaagcgctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||   ||||  ||| ||||||||||||    
T  27309636 gttagcaagcgctaaacctagattgaaaagaaacaagtttgcaagcgacaaacttgtgaaaatagggttctctaatctgccaaaaattaagaaaa 27309730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 191 - 280
Target Start/End: Original strand, 3778735 - 3778824
Alignment:
Q  191 caagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaaa 280  Q
    ||||| |||||  |||||||||| ||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||    
T  3778735 caagcactaaatatagattgaaatgaacaagtttgcaagcgagaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaa 3778824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 163 - 272
Target Start/End: Original strand, 4888685 - 4888793
Alignment:
Q  163 ttgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatcc 262  Q
    |||||||| |||| ||||||||| | |||| ||||| ||||||||| |||||||| ||||||||||||||||||  ||||||||||| |||||||||| |    
T  4888685 ttgacgcaatacggaagcgtaggct-agcatgcgctgaacctagatagaaaagaacaagtttgcaagcgacaaacctgtgaaaatagagttccggaattc 4888783  T
Q  263 accagaaatt 272  Q
    ||||||||||    
T  4888784 accagaaatt 4888793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 188 - 280
Target Start/End: Complemental strand, 1365737 - 1365645
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaaa 280  Q
    |||||||||||||||||||||||||| ||| ||||||| ||||||  || ||||||||||||||||||  ||||||||| ||||| |||||||    
T  1365737 tagcaagcgctaaacctagattgaaaggaacaagtttgtaagcgatgaacttgtgaaaatagggttccataatccaccaaaaattgagaaaaa 1365645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 188 - 279
Target Start/End: Complemental strand, 5934670 - 5934578
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||| || | |||||||  ||||||| ||||||    
T  5934670 tagcaagcgctaaacctagattgaaaagaaacaaatttgcaagcgacaaacttgtgaaaataggatttcagaatccattagaaattgagaaaa 5934578  T

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Target: chr7; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 163 - 266
Target Start/End: Original strand, 7803030 - 7803133
Alignment:
Q  163 ttgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatc 261  Q
    ||||||||||||| ||||||||| |||||||| | ||||||||| | ||||||||| |||||||||||| ||||| || |||||||| ||||||||||||    
T  7803030 ttgacgcagtacggaagcgtagg-ttagcaagggttaaacctaggtcgaaaagaaacaagtttgcaagcaacaaacttatgaaaataaggttccggaatc 7803128  T
Q  262 cacca 266  Q
    |||||    
T  7803129 cacca 7803133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 164 - 280
Target Start/End: Complemental strand, 2768015 - 2767904
Alignment:
Q  164 tgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatcca 263  Q
    |||||||||||| ||||||||| |    || ||||||||||||||||||| ||| ||||| ||||||||| |||||| | |||||||||| |||||||||    
T  2768015 tgacgcagtacggaagcgtaggtt----aaacgctaaacctagattgaaaggaataagttcgcaagcgacgaatttgag-aaatagggtttcggaatcca 2767921  T
Q  264 ccagaaattaagaaaaa 280  Q
    ||||||||| |||||||    
T  2767920 ccagaaattgagaaaaa 2767904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 177 - 253
Target Start/End: Original strand, 1220453 - 1220529
Alignment:
Q  177 aagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggtt 253  Q
    ||||||||||||||||| ||||||||||| || |||| ||| |||||||||| ||||||| ||||||||||||||||    
T  1220453 aagcgtagggttagcaaacgctaaacctacatagaaatgaacaagtttgcaaacgacaaacttgtgaaaatagggtt 1220529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 177 - 272
Target Start/End: Complemental strand, 1786760 - 1786664
Alignment:
Q  177 aagcgtagggttagcaagcgctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaatt 272  Q
    ||||||||| |||||||| ||||||||||||| |||||  || ||||||||||||||||||  || |||||||||||||| ||||||| ||||||||    
T  1786760 aagcgtaggattagcaagtgctaaacctagatagaaaaataacaagtttgcaagcgacaaacatgcgaaaatagggttccagaatccatcagaaatt 1786664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 11229046 - 11228962
Alignment:
Q  189 agcaagcgctaaacctagattgaaaa-gaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaatt 272  Q
    |||||| ||||||||||||||||||| ||| ||||||||| ||||||||  |||||||| |||||||| ||||||||||||||||    
T  11229046 agcaagtgctaaacctagattgaaaaagaacaagtttgcaggcgacaaacgtgtgaaaaaagggttccagaatccaccagaaatt 11228962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 30217879 - 30217796
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaatt 272  Q
    |||||||||||||||||||||||||| ||| ||||| |||||||||||| |||||||||||| |||| | |||||||||| ||||    
T  30217879 tagcaagcgctaaacctagattgaaa-gaacaagttcgcaagcgacaaacttgtgaaaatagagttctgaaatccaccagtaatt 30217796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 164 - 266
Target Start/End: Complemental strand, 1874627 - 1874525
Alignment:
Q  164 tgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatcc 262  Q
    ||||| |||||| ||||||| | ||||||| | |||||||| ||||||||||||| |||||||||| ||||||| ||||||||||| |||||  ||||||    
T  1874627 tgacgtagtacggaagcgtatg-ttagcaaacactaaaccttgattgaaaagaaacaagtttgcaaacgacaaacttgtgaaaataaggttcaagaatcc 1874529  T
Q  263 acca 266  Q
    ||||    
T  1874528 acca 1874525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 196 - 261
Target Start/End: Original strand, 1753629 - 1753695
Alignment:
Q  196 gctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatc 261  Q
    |||||||||| |||||||||||| |||||||||||||||||| |||||||||||| ||||| |||||    
T  1753629 gctaaacctaaattgaaaagaaacaagtttgcaagcgacaaacttgtgaaaatagagttccagaatc 1753695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 188 - 261
Target Start/End: Complemental strand, 1883555 - 1883481
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatc 261  Q
    |||||| | |||||||||||||||||||||| |||||||||| ||||||| ||||||||||| |||||| |||||    
T  1883555 tagcaaacactaaacctagattgaaaagaaacaagtttgcaaacgacaaacttgtgaaaataaggttccagaatc 1883481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 191 - 272
Target Start/End: Original strand, 6451776 - 6451858
Alignment:
Q  191 caagcgctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaatt 272  Q
    ||||||||||| ||||||||||| |||| ||||||||||||||||||  |||||||||| |||| ||||||||| || |||||    
T  6451776 caagcgctaaatctagattgaaaggaaacaagtttgcaagcgacaaacctgtgaaaataaggtttcggaatccaacaaaaatt 6451858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 188 - 264
Target Start/End: Complemental strand, 13466797 - 13466720
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccac 264  Q
    |||||||||||||||||| ||| |||||||| ||||||||||   ||||| || ||||||||||||||||||||||||    
T  13466797 tagcaagcgctaaacctatattaaaaagaaacaagtttgcaaaaaacaaacttatgaaaatagggttccggaatccac 13466720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 192 - 279
Target Start/End: Original strand, 8916404 - 8916492
Alignment:
Q  192 aagcgctaaacctagattgaaaa-gaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    ||||| |||||||||||| |||| ||| |||||||||| ||| ||| ||||| |||||| |||| ||||||||||||||||| ||||||    
T  8916404 aagcgttaaacctagatttaaaatgaacaagtttgcaaacgataaacttgtggaaatagagttctggaatccaccagaaattgagaaaa 8916492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 229 - 279
Target Start/End: Original strand, 1690196 - 1690246
Alignment:
Q  229 gcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    |||||||||||||||||||||||||| |||||||| |||||||| ||||||    
T  1690196 gcgacaaatttgtgaaaatagggttctggaatccatcagaaattgagaaaa 1690246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 8063842 - 8063885
Alignment:
Q  203 ctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaa 246  Q
    ||||||||||||||| |||||||||||||| |||||||||||||    
T  8063842 ctagattgaaaagaacaagtttgcaagcgataaatttgtgaaaa 8063885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 270
Target Start/End: Complemental strand, 11228787 - 11228704
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaa 270  Q
    |||||| | |||||||| |||  |||||||| ||||||| |||||||||| ||||| |||||||||||  ||||||||||||||    
T  11228787 tagcaaacactaaaccttgataaaaaagaaacaagtttggaagcgacaaacttgtggaaatagggttctagaatccaccagaaa 11228704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 279
Target Start/End: Original strand, 4133305 - 4133389
Alignment:
Q  196 gctaaacctagattgaaaa-gaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    ||||||| ||||||||| | ||| || ||| ||||||||||| |||||||||||| |||| | ||||| | ||||||| ||||||    
T  4133305 gctaaacttagattgaagatgaacaaattttcaagcgacaaacttgtgaaaatagagttctgaaatcccctagaaattgagaaaa 4133389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 5e-35; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 162 - 253
Target Start/End: Original strand, 27952316 - 27952407
Alignment:
Q  162 attgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggtt 253  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||    
T  27952316 attgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 27952407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 164 - 253
Target Start/End: Complemental strand, 22011525 - 22011436
Alignment:
Q  164 tgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggtt 253  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||| ||||||||||||||||    
T  22011525 tgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagtgacaaacttgtgaaaatagggtt 22011436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 188 - 279
Target Start/End: Complemental strand, 23457712 - 23457620
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||    
T  23457712 tagcaagcgctaaacctagattgaaaataaacaagtttgcaagcgacaaacttgtgaaaatagggttccggaatccaccaaaaattgagaaaa 23457620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 164 - 250
Target Start/End: Complemental strand, 2156056 - 2155970
Alignment:
Q  164 tgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagg 250  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||| |||||||||||||    
T  2156056 tgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcgagcgacaaacttgtgaaaatagg 2155970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 164 - 266
Target Start/End: Complemental strand, 36647381 - 36647280
Alignment:
Q  164 tgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatcca 263  Q
    |||||||||||| ||||||||| | |||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||  ||||||||    
T  36647381 tgacgcagtacggaagcgtaggct-agcaagcgctaaacctcgattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttttggaatcca 36647283  T
Q  264 cca 266  Q
    |||    
T  36647282 cca 36647280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 164 - 253
Target Start/End: Original strand, 27956154 - 27956243
Alignment:
Q  164 tgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggtt 253  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||  | |||||||||||||    
T  27956154 tgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacctatgaaaatagggtt 27956243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 164 - 253
Target Start/End: Complemental strand, 31636426 - 31636337
Alignment:
Q  164 tgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggtt 253  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||| ||||||||||| ||||    
T  31636426 tgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaactagtttgcaagcgacaaacttgtgaaaatatggtt 31636337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 164 - 270
Target Start/End: Complemental strand, 15129478 - 15129373
Alignment:
Q  164 tgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatcca 263  Q
    ||||| |||||| ||||||||| | |||||||||||||||||||| |||||||| ||||| |||||||||||| |||||||||||||||||| ||||| |    
T  15129478 tgacgtagtacggaagcgtaggct-agcaagcgctaaacctagatagaaaagaacaagttcgcaagcgacaaacttgtgaaaatagggttccagaatcaa 15129380  T
Q  264 ccagaaa 270  Q
    |||||||    
T  15129379 ccagaaa 15129373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 164 - 250
Target Start/End: Complemental strand, 31634193 - 31634107
Alignment:
Q  164 tgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagg 250  Q
    |||||||||||| ||||||||||||||||| |||||||||||||| |||||||| |||||||| ||||||||| |||||||||||||    
T  31634193 tgacgcagtacggaagcgtagggttagcaaacgctaaacctagatagaaaagaacaagtttgctagcgacaaacttgtgaaaatagg 31634107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 188 - 279
Target Start/End: Complemental strand, 33051684 - 33051592
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaa-gaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    |||||||||||||||||| |||||||| ||| |||||||||||||||||| || |||||||||||||| ||||||||| ||||||| ||||||    
T  33051684 tagcaagcgctaaacctaaattgaaaaagaacaagtttgcaagcgacaaacttttgaaaatagggttctggaatccactagaaattgagaaaa 33051592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 189 - 279
Target Start/End: Original strand, 32161993 - 32162084
Alignment:
Q  189 agcaagcgctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    |||||||| ||||||||||| ||||||||| ||||||||||| |||||| ||||||||||||||||| ||||||||||||||| | ||||||    
T  32161993 agcaagcgttaaacctagatcgaaaagaaacaagtttgcaagtgacaaacttgtgaaaatagggttcaggaatccaccagaaactgagaaaa 32162084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 164 - 253
Target Start/End: Complemental strand, 33655716 - 33655628
Alignment:
Q  164 tgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggtt 253  Q
    |||||||||||| ||| ||||| |||||||||||||||||||||| |||||  | |||||||||||||||||| ||||||||||||||||    
T  33655716 tgacgcagtacggaagtgtagg-ttagcaagcgctaaacctagatagaaaaatacaagtttgcaagcgacaaacttgtgaaaatagggtt 33655628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 188 - 280
Target Start/End: Complemental strand, 12966542 - 12966450
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaaa 280  Q
    |||||| || |||| ||||||||||||||| ||||| ||||||||| || ||||||||||||||||||| ||||||||| ||||| |||||||    
T  12966542 tagcaaacgttaaatctagattgaaaagaacaagttcgcaagcgacgaacttgtgaaaatagggttccgaaatccaccaaaaattgagaaaaa 12966450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 185 - 279
Target Start/End: Original strand, 5171605 - 5171700
Alignment:
Q  185 ggttagcaagcgctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    ||||| ||||||||||| |||||||||||||| | |||||||||||||||||| |||| ||||||||||||  |||||||| ||||||| ||||||    
T  5171605 ggttaacaagcgctaaatctagattgaaaagagacaagtttgcaagcgacaaacttgtaaaaatagggttcaagaatccactagaaattgagaaaa 5171700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 185 - 279
Target Start/End: Complemental strand, 18946029 - 18945934
Alignment:
Q  185 ggttagcaagcgctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    |||||||||||||||||| |||||||| |||||| || ||||||||||||||| |||||| || || |||||||||| ||||||||||||| ||||    
T  18946029 ggttagcaagcgctaaacgtagattgagaagaaataaatttgcaagcgacaaacttgtgagaacagagttccggaattcaccagaaattaataaaa 18945934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 162 - 236
Target Start/End: Complemental strand, 2165985 - 2165911
Alignment:
Q  162 attgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaa 236  Q
    ||||||||||||||| |||||||||||| |||||| ||||||||||| |||||||| |||||||||||| |||||    
T  2165985 attgacgcagtacgacagcgtagggttaacaagcgttaaacctagatagaaaagaacaagtttgcaagcaacaaa 2165911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 185 - 279
Target Start/End: Complemental strand, 21772443 - 21772349
Alignment:
Q  185 ggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    ||||||| | |||||||| ||||||||||| || |||||||||||||||||| || ||||||||||||||| ||||||| || ||||| ||||||    
T  21772443 ggttagccaacgctaaacttagattgaaaaaaacaagtttgcaagcgacaaacttatgaaaatagggttcctgaatccatcacaaattgagaaaa 21772349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 219 - 281
Target Start/End: Complemental strand, 36649001 - 36648939
Alignment:
Q  219 aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaaaa 281  Q
    |||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||    
T  36649001 aagtttgcaagcgacaaaattgtaaaaatagggttctggaatccaccagaaattaagaaaaaa 36648939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 164 - 281
Target Start/End: Complemental strand, 1518281 - 1518165
Alignment:
Q  164 tgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatcca 263  Q
    |||||||||||| |||||||    ||||||||||| |||||||||||||| | | ||||| ||||||||| || || |||||||||||||||| ||||||    
T  1518281 tgacgcagtacggaagcgta-tcctagcaagcgcttaacctagattgaaagggacaagttcgcaagcgacgaacttatgaaaatagggttccgaaatcca 1518183  T
Q  264 ccagaaattaagaaaaaa 281  Q
    | ||||||| ||||||||    
T  1518182 ctagaaattgagaaaaaa 1518165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 220 - 281
Target Start/End: Complemental strand, 36615243 - 36615182
Alignment:
Q  220 agtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaaaa 281  Q
    ||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||    
T  36615243 agtttgcaagcgacaaaattgtaaaaataaggttccggaatccaccagaaattaagaaaaaa 36615182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 4184979 - 4184902
Alignment:
Q  204 tagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaaa 280  Q
    |||||| |||||||| ||||| |||||||||||| |||||||||||||||| |||||||||| ||||||| |||||||    
T  4184979 tagattcaaaagaaataagttcgcaagcgacaaacttgtgaaaatagggtttcggaatccacgagaaattgagaaaaa 4184902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 279
Target Start/End: Complemental strand, 28737903 - 28737811
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgac-aaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    |||||||||||||||||| ||||||||||  ||||||||||| ||| ||| |||||||||||| ||| | ||||||| |||||||| ||||||    
T  28737903 tagcaagcgctaaacctaaattgaaaagagtaagtttgcaagagacaaaacttgtgaaaatagagtttcagaatccaacagaaattgagaaaa 28737811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 188 - 248
Target Start/End: Complemental strand, 28737971 - 28737911
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaata 248  Q
    ||||||| |||||||||||||||||||||  |||||||||||||||||| || ||||||||    
T  28737971 tagcaagtgctaaacctagattgaaaagagcaagtttgcaagcgacaaacttttgaaaata 28737911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 192 - 263
Target Start/End: Original strand, 32163798 - 32163870
Alignment:
Q  192 aagcgctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatcca 263  Q
    ||||| ||||||||||||||||||||| ||||||| ||||| |||| ||||||||||| |||| |||||||||    
T  32163798 aagcgttaaacctagattgaaaagaaataagtttgtaagcgtcaaacttgtgaaaatatggtttcggaatcca 32163870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 198 - 279
Target Start/End: Complemental strand, 23456631 - 23456549
Alignment:
Q  198 taaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    |||||||| |||||||||||| |||||||||||||||||| || ||||||||  |||| |||||||||| |||| | ||||||    
T  23456631 taaacctatattgaaaagaaacaagtttgcaagcgacaaacttttgaaaataaagttctggaatccaccggaaactgagaaaa 23456549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 279
Target Start/End: Complemental strand, 33053485 - 33053391
Alignment:
Q  186 gttagcaagcgctaaacctagattg-aaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    ||||| |||||||||| |||||||| ||||||| ||||||| |||||||||| || ||||||| |||||  | |||| |||||||||| ||||||    
T  33053485 gttagaaagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaa 33053391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 280
Target Start/End: Original strand, 12123951 - 12124012
Alignment:
Q  219 aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaaa 280  Q
    ||||||||||||||||||  |||||||||| ||||| ||||||||||| ||||| |||||||    
T  12123951 aagtttgcaagcgacaaacctgtgaaaatatggttcaggaatccaccaaaaattgagaaaaa 12124012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 223 - 289
Target Start/End: Complemental strand, 31636338 - 31636271
Alignment:
Q  223 ttgcaagcgacaaatttgtgaaaata-gggttccggaatccaccagaaattaagaaaaaatcttgaat 289  Q
    ||||||||||||||  | | |||||| |||||||||||||||||||||||| ||| ||||||||||||    
T  31636338 ttgcaagcgacaaacctatcaaaataagggttccggaatccaccagaaattgagagaaaatcttgaat 31636271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 8294644 - 8294559
Alignment:
Q  188 tagcaagcgctaaacctagattgaa-aagaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaatt 272  Q
    ||||||| ||||||| ||||| ||| ||||| | |||||||||||||||| |||| ||||||| ||| |  |||||||||||||||    
T  8294644 tagcaagtgctaaacttagatagaagaagaacacgtttgcaagcgacaaacttgtaaaaatagtgtttcataatccaccagaaatt 8294559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 33655598 - 33655548
Alignment:
Q  252 ttccggaatccaccagaaattaagaaaaaatcttgaatgagtttattgaat 302  Q
    ||||||||||||||||||||| ||| ||||||| |||| | ||||||||||    
T  33655598 ttccggaatccaccagaaattgagagaaaatctcgaataattttattgaat 33655548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 1218319 - 1218372
Alignment:
Q  197 ctaaacctagattgaaaa-gaaaaagtttgcaagcgacaaatttgtgaaaatag 249  Q
    |||||| ||||||||||| ||| ||||||| || ||||||||||||||||||||    
T  1218319 ctaaacttagattgaaaaagaataagtttgtaaacgacaaatttgtgaaaatag 1218372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 29715217 - 29715168
Alignment:
Q  187 ttagcaagcgctaaacctagattgaaaa-gaaaaagtttgcaagcgacaa 235  Q
    ||||||| | ||||||||||||||||||  ||||||||||||||||||||    
T  29715217 ttagcaaactctaaacctagattgaaaataaaaaagtttgcaagcgacaa 29715168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 162 - 280
Target Start/End: Original strand, 2472687 - 2472804
Alignment:
Q  162 attgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatc 261  Q
    |||||||||||||||||||||||| | ||||||||||||||||| |||||||   | |||||||||| ||||||| ||||||||||||||||||||||||    
T  2472687 attgacgcagtacgaaagcgtaggct-agcaagcgctaaacctaaattgaaagagacaagtttgcaaccgacaaacttgtgaaaatagggttccggaatc 2472785  T
Q  262 caccagaaattaagaaaaa 280  Q
    ||||||||||| |||||||    
T  2472786 caccagaaattgagaaaaa 2472804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 164 - 253
Target Start/End: Original strand, 3063737 - 3063826
Alignment:
Q  164 tgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggtt 253  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||    
T  3063737 tgacgcagtacgaaagcgtagggttagcaagcgttaaacctagatagaaaagaaagagtttgcaagcgacaaacttgtgaaaatagggtt 3063826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 163 - 253
Target Start/End: Original strand, 43303959 - 43304049
Alignment:
Q  163 ttgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggtt 253  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||    
T  43303959 ttgacgcagtacggaagcgtaaggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 43304049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 164 - 253
Target Start/End: Original strand, 43306672 - 43306761
Alignment:
Q  164 tgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggtt 253  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||| ||||||||||||||||    
T  43306672 tgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcaacaaacttgtgaaaatagggtt 43306761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 164 - 253
Target Start/End: Complemental strand, 5128998 - 5128909
Alignment:
Q  164 tgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggtt 253  Q
    |||||||||||  |||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||    
T  5128998 tgacgcagtacagaagcgtagggttagcaggcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 5128909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 183 - 304
Target Start/End: Original strand, 45168338 - 45168462
Alignment:
Q  183 agggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaa---atagggttccggaatccaccagaaattaagaaaa 279  Q
    |||||||||||| ||||||||||||||||||  || |||||||||||||||||| ||||||||   |||||||||| |||||||| ||||||| ||| ||    
T  45168338 agggttagcaagtgctaaacctagattgaaataaacaagtttgcaagcgacaaacttgtgaaaaatatagggttccagaatccacaagaaattgagagaa 45168437  T
Q  280 aatcttgaatgagtttattgaataa 304  Q
    ||||| |||| | ||||||||||||    
T  45168438 aatctcgaataattttattgaataa 45168462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 164 - 253
Target Start/End: Original strand, 3068875 - 3068964
Alignment:
Q  164 tgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggtt 253  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| |||||||| |||||||||||  | ||| |||| |||||||||||    
T  3068875 tgacgcagtacggaagcgtatggttagcaagcgctaaacctagatagaaaagaacaagtttgcaaggaaaaaacttgtaaaaatagggtt 3068964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 187 - 249
Target Start/End: Original strand, 5324654 - 5324717
Alignment:
Q  187 ttagcaagcgctaaacctagattgaaaagaaaa-agtttgcaagcgacaaatttgtgaaaatag 249  Q
    |||||||||| ||||||| |||||||||||||| ||||||||||||| ||||||||||||||||    
T  5324654 ttagcaagcgttaaaccttgattgaaaagaaaagagtttgcaagcgataaatttgtgaaaatag 5324717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 162 - 270
Target Start/End: Original strand, 365591 - 365698
Alignment:
Q  162 attgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatc 261  Q
    ||||||||| |||| ||||||||| | ||||| ||||||||||| |  ||||| || || ||  ||||||||||| |||||||||||||||||  |||||    
T  365591 attgacgcattacggaagcgtaggct-agcaaacgctaaacctaaaaagaaaataacaaattcccaagcgacaaacttgtgaaaatagggttcttgaatc 365689  T
Q  262 caccagaaa 270  Q
    |||||||||    
T  365690 caccagaaa 365698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 364 - 412
Target Start/End: Original strand, 48767473 - 48767521
Alignment:
Q  364 ctgttgccggcaaattggttggagctactatgagaagaagtgccatggt 412  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  48767473 ctgtggccggcaaattggttggagctactatgagaagaagtgccttggt 48767521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 244 - 340
Target Start/End: Complemental strand, 19795231 - 19795132
Alignment:
Q  244 aaatagggttccggaatccaccagaaattaagaaaaaatcttgaatgagtttattgaataa----ttgcctcttaggctacataatgttctgtttaaata 339  Q
    ||||| |||| || ||||||||| ||||| ||| ||||||| |||| | ||||||||||||    ||| |||||||||| ||||||||||||||||||||    
T  19795231 aaataaggttacgaaatccacca-aaatttagagaaaatctggaataattttattgaataaaaaattgtctcttaggctgcataatgttctgtttaaata 19795133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 279
Target Start/End: Complemental strand, 41152619 - 41152524
Alignment:
Q  185 ggttagcaagcgctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    ||||||||| |||||||| | ||| ||||| ||| || ||| |||||||||||||||||||||||| ||| | |||||||| | ||||| ||||||    
T  41152619 ggttagcaaacgctaaacttggatggaaaataaataaatttacaagcgacaaatttgtgaaaatagtgtttcagaatccacaaaaaattgagaaaa 41152524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 255
Target Start/End: Complemental strand, 52708913 - 52708842
Alignment:
Q  185 ggttagcaagcgctaaacctagattgaaaa-gaaaaagtttgcaagcgacaaatttgtgaaaatagggttcc 255  Q
    ||||| |||||||||||||||||| ||||| ||| || ||||||||||| ||| |||||||| |||||||||    
T  52708913 ggttaacaagcgctaaacctagatagaaaaagaacaaatttgcaagcgataaacttgtgaaagtagggttcc 52708842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 251
Target Start/End: Original strand, 35908506 - 35908572
Alignment:
Q  185 ggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaataggg 251  Q
    |||||||||||||||||||||||| ||||  | ||| ||||||| ||||||| |||| |||||||||    
T  35908506 ggttagcaagcgctaaacctagatagaaagaacaaaatttgcaaacgacaaacttgtaaaaataggg 35908572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 8536392 - 8536481
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaagaaaaagt-----ttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaatt 272  Q
    ||||||| ||||||||||||| ||||| ||||| |     ||||||| |||| | || |||||||||| |||||||||||||||||||||    
T  8536392 tagcaagtgctaaacctagatagaaaaaaaaaaatcaaggttgcaagggacagacttttgaaaataggattccggaatccaccagaaatt 8536481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 271
Target Start/End: Original strand, 1320124 - 1320156
Alignment:
Q  239 tgtgaaaatagggttccggaatccaccagaaat 271  Q
    ||||||||||||||||| |||||||||||||||    
T  1320124 tgtgaaaatagggttccagaatccaccagaaat 1320156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 33175901 - 33175833
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttcc 255  Q
    |||||| || |||||||| |||||||||| | ||||||||||  |||||| || |||||||||||||||    
T  33175901 tagcaaacgataaacctatattgaaaagagacaagtttgcaaaggacaaacttatgaaaatagggttcc 33175833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 8e-34; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 164 - 253
Target Start/End: Original strand, 22921850 - 22921939
Alignment:
Q  164 tgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggtt 253  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||    
T  22921850 tgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaataagtttgcaagcgacaaacttgtgaaaatagggtt 22921939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 183 - 281
Target Start/End: Complemental strand, 18468719 - 18468621
Alignment:
Q  183 agggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaaaa 281  Q
    |||||||||||||||||||||||| | |||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||    
T  18468719 agggttagcaagcgctaaacctaggtagaaaagaacaagcttgcaagcgacaaacttgtgaaaatagggttccggaatccaccagaaattgagagaaaa 18468621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 164 - 281
Target Start/End: Original strand, 2189722 - 2189838
Alignment:
Q  164 tgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatcca 263  Q
    |||||||||||| ||||||||| | |||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||| ||||  ||||||||    
T  2189722 tgacgcagtacggaagcgtaggct-agcaagcgctaaacctcgattgaaaagaacaagtttgcaagcgacaaacttgtgaaaataaggttttggaatcca 2189820  T
Q  264 ccagaaattaagaaaaaa 281  Q
    ||| ||| | ||||||||    
T  2189821 ccaaaaaatgagaaaaaa 2189838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 164 - 253
Target Start/End: Complemental strand, 6845425 - 6845336
Alignment:
Q  164 tgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggtt 253  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||| ||||||| ||| ||||||||||||||||    
T  6845425 tgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttacaagcgataaacttgtgaaaatagggtt 6845336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 164 - 253
Target Start/End: Original strand, 22512046 - 22512135
Alignment:
Q  164 tgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggtt 253  Q
    |||||||||||| ||| |||||||||||||||||||||||||| | |||||||| |||||||||||||||||| ||||||||||||||||    
T  22512046 tgacgcagtacggaagtgtagggttagcaagcgctaaacctaggtagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 22512135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 164 - 253
Target Start/End: Original strand, 22519346 - 22519435
Alignment:
Q  164 tgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggtt 253  Q
    |||||||||||| ||| |||||||||||||||||||||||||| | |||||||| |||||||||||||||||| ||||||||||||||||    
T  22519346 tgacgcagtacggaagtgtagggttagcaagcgctaaacctaggtagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 22519435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 164 - 253
Target Start/End: Original strand, 22926648 - 22926737
Alignment:
Q  164 tgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggtt 253  Q
    ||||| |||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||    
T  22926648 tgacgtagtacggaagcgtagggttagaaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 22926737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 164 - 253
Target Start/End: Original strand, 42891664 - 42891753
Alignment:
Q  164 tgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggtt 253  Q
    ||||||| |||| |||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||    
T  42891664 tgacgcaatacggaagcgtagggctagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 42891753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 161 - 253
Target Start/End: Complemental strand, 37189958 - 37189866
Alignment:
Q  161 aattgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggtt 253  Q
    ||||||||||||||| |||| |||||||||||||| ||||| |||||| |||||||| |||||||||||||||||| ||||||||||||||||    
T  37189958 aattgacgcagtacggaagcttagggttagcaagctctaaaactagatagaaaagaataagtttgcaagcgacaaacttgtgaaaatagggtt 37189866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 164 - 253
Target Start/End: Original strand, 22520799 - 22520888
Alignment:
Q  164 tgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggtt 253  Q
    ||||||| || | |||||||||||||||||||||||||||||| | |||||||  |||||||||||||||||||||||||||||||||||    
T  22520799 tgacgcaataaggaagcgtagggttagcaagcgctaaacctaggtagaaaagatcaagtttgcaagcgacaaatttgtgaaaatagggtt 22520888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 172 - 253
Target Start/End: Complemental strand, 23570665 - 23570584
Alignment:
Q  172 tacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggtt 253  Q
    |||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||| ||||    
T  23570665 tacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaataaggtt 23570584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 188 - 279
Target Start/End: Complemental strand, 26374965 - 26374874
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    ||||||||| ||| |||||||||||||||| ||||| |||||||||||| |||| ||||||||||| || ||||||||||||||||||||||    
T  26374965 tagcaagcgttaagcctagattgaaaagaacaagttcgcaagcgacaaacttgtaaaaatagggtttcgaaatccaccagaaattaagaaaa 26374874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 198 - 279
Target Start/End: Complemental strand, 20693855 - 20693773
Alignment:
Q  198 taaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||    
T  20693855 taaacctagattgaaaataaacaagtttgcaagcgacaaatttgtgaaaatatggttccggaatccatcagaaattgagaaaa 20693773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 163 - 279
Target Start/End: Complemental strand, 24731317 - 24731201
Alignment:
Q  163 ttgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatc 261  Q
    |||||||||||||  |||||||| | ||||||||||||||||||||||||||| || |||||||||||| ||||| |||||||||||| ||| ||||||     
T  24731317 ttgacgcagtacgggagcgtaggct-agcaagcgctaaacctagattgaaaaggaacaagtttgcaagcaacaaacttgtgaaaatagagtttcggaatt 24731219  T
Q  262 caccagaaattaagaaaa 279  Q
    || |||||||| ||||||    
T  24731218 catcagaaattgagaaaa 24731201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 177 - 279
Target Start/End: Complemental strand, 14130241 - 14130139
Alignment:
Q  177 aagcgtagggttagcaagcgctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaag 275  Q
    ||||||||| || ||||||| |||| |||||| ||||||| | |||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||    
T  14130241 aagcgtaggctt-gcaagcgttaaatctagatcgaaaagagacaagtttgcaagcgataaatttgtgaaaataaggttccggaatccaccagaaattgag 14130143  T
Q  276 aaaa 279  Q
    ||||    
T  14130142 aaaa 14130139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 188 - 279
Target Start/End: Complemental strand, 2687808 - 2687716
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaa-gaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    |||| |||||||||||||||| ||||| ||| |||||||||||||||||| |||||||||||||||||  |||||||| ||||||| ||||||    
T  2687808 tagcgagcgctaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttctagaatccacaagaaattgagaaaa 2687716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 188 - 251
Target Start/End: Complemental strand, 42890457 - 42890394
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaataggg 251  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||    
T  42890457 tagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaataggg 42890394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 24578799 - 24578885
Alignment:
Q  187 ttagcaagcgctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaatt 272  Q
    |||| ||||||||||||||||| ||||||||| |||||||||||||  |||| |||||||||||||||| ||||||||| |||||||    
T  24578799 ttagaaagcgctaaacctagatcgaaaagaaacaagtttgcaagcggtaaatctgtgaaaatagggttctggaatccactagaaatt 24578885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 220 - 281
Target Start/End: Original strand, 2188397 - 2188458
Alignment:
Q  220 agtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaaaa 281  Q
    ||||||||||||||||| |||| |||||||||||| | ||||||||||||||||||||||||    
T  2188397 agtttgcaagcgacaaaattgtaaaaatagggttctgaaatccaccagaaattaagaaaaaa 2188458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 279
Target Start/End: Complemental strand, 16598318 - 16598222
Alignment:
Q  185 ggttagcaagcgctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccag-aaattaagaaaa 279  Q
    |||||||||||||||||| ||||||  ||||||| ||||||||| |||||||| ||||||||||||||||||  ||| |||||| ||||| ||||||    
T  16598318 ggttagcaagcgctaaacttagattagaaagaaacaagtttgcacgcgacaaacttgtgaaaatagggttccaaaatacaccagtaaattgagaaaa 16598222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 279
Target Start/End: Complemental strand, 24731098 - 24731006
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    ||||||||||||||  |||||||||||| || |||||||||||| ||||| ||||||||||||| || ||||||||| || ||||| ||||||    
T  24731098 tagcaagcgctaaatttagattgaaaaggaacaagtttgcaagcaacaaacttgtgaaaataggatttcggaatccatcaaaaattgagaaaa 24731006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 205 - 279
Target Start/End: Complemental strand, 2689195 - 2689121
Alignment:
Q  205 agattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    |||||||||||||| ||||||||||||||||||  ||||||||||||||||||| ||||| |||||||| ||||||    
T  2689195 agattgaaaagaaacaagtttgcaagcgacaaaactgtgaaaatagggttccggcatcca-cagaaattgagaaaa 2689121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 339
Target Start/End: Original strand, 18180802 - 18180892
Alignment:
Q  252 ttccggaatccaccagaaattaagaaaaaatcttgaatgagtttattgaat----aattgcctcttaggctacataatgttctgtttaaata 339  Q
    |||| ||||||||||||| || ||| ||||||| |||| | ||||||||||    || ||||||||||||||||||||||||||||||||||    
T  18180802 ttccagaatccaccagaa-ttgagagaaaatctcgaataattttattgaatcaaaaagtgcctcttaggctacataatgttctgtttaaata 18180892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 279
Target Start/End: Original strand, 25479427 - 25479520
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaa-gaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    |||||| |||||||||||| || |||| |||| ||| ||||||| ||||||| | |||||||| |||||||||||||||||||| || ||||||    
T  25479427 tagcaaacgctaaacctaggttaaaaaagaaacaaggttgcaagtgacaaatctttgaaaataaggttccggaatccaccagaatttgagaaaa 25479520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 2609550 - 2609603
Alignment:
Q  219 aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaatt 272  Q
    ||||||||||| |||||| |||||||||||||||| | |||| |||||||||||    
T  2609550 aagtttgcaagtgacaaacttgtgaaaatagggttacagaattcaccagaaatt 2609603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 196 - 253
Target Start/End: Complemental strand, 23573640 - 23573583
Alignment:
Q  196 gctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggtt 253  Q
    |||||| |||||| ||||| || |||||| ||||||||||| ||||||||||||||||    
T  23573640 gctaaagctagatagaaaataacaagtttacaagcgacaaacttgtgaaaatagggtt 23573583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 26378090 - 26378031
Alignment:
Q  163 ttgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtt 223  Q
    |||||| |||||| ||||||||| | ||||||||||||| ||||||||||||||| |||||    
T  26378090 ttgacgtagtacggaagcgtaggct-agcaagcgctaaatctagattgaaaagaacaagtt 26378031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 279
Target Start/End: Original strand, 24577583 - 24577643
Alignment:
Q  219 aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    ||||||||||  ||||||  ||||||||| ||||| || ||||||||||||||| ||||||    
T  24577583 aagtttgcaaatgacaaacatgtgaaaatggggtttcgtaatccaccagaaattgagaaaa 24577643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 8e-34; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 164 - 253
Target Start/End: Complemental strand, 3536123 - 3536034
Alignment:
Q  164 tgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggtt 253  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||    
T  3536123 tgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 3536034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 164 - 253
Target Start/End: Complemental strand, 3542334 - 3542245
Alignment:
Q  164 tgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggtt 253  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||| ||||||||||||||||    
T  3542334 tgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgtaagcgacaaacttgtgaaaatagggtt 3542245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 168 - 253
Target Start/End: Original strand, 29340810 - 29340895
Alignment:
Q  168 gcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggtt 253  Q
    |||||||| |||||||||||||||| ||||||||||||||| ||||| || |||||||||||||||||| ||||||||||||||||    
T  29340810 gcagtacggaagcgtagggttagcaggcgctaaacctagatagaaaaaaacaagtttgcaagcgacaaacttgtgaaaatagggtt 29340895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 164 - 249
Target Start/End: Complemental strand, 30050005 - 30049920
Alignment:
Q  164 tgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatag 249  Q
    |||||||||||| ||||| ||||||||||||||||||||||| || |||||||| |||||||||||||||||| ||||||||||||    
T  30050005 tgacgcagtacggaagcgaagggttagcaagcgctaaacctatatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatag 30049920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 164 - 280
Target Start/End: Original strand, 27822118 - 27822234
Alignment:
Q  164 tgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatcc 262  Q
    |||||||||||| ||||||||| | ||||| ||||||||||| || |||||| || |||||| ||||||||||| ||||||||| ||||||||| |||||    
T  27822118 tgacgcagtacggaagcgtaggct-agcaaacgctaaacctaaatagaaaaggaacaagttttcaagcgacaaacttgtgaaaacagggttccgaaatcc 27822216  T
Q  263 accagaaattaagaaaaa 280  Q
    |||||||||| |||||||    
T  27822217 accagaaattgagaaaaa 27822234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 188 - 279
Target Start/End: Complemental strand, 1127320 - 1127228
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    |||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||| |||||| ||||| ||||| ||||||    
T  1127320 tagcgagcgctaaacctagattaaaaagaaacaagtttgcaagcgacaaatttgtgaaaatagtgtttcggaatacaccaaaaattgagaaaa 1127228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 185 - 280
Target Start/End: Complemental strand, 11659000 - 11658905
Alignment:
Q  185 ggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaaa 280  Q
    ||||||||||| ||||||||||||||||||||| || ||||||||||| ||| |||||||||||| |||  ||||||||||| ||||| |||||||    
T  11659000 ggttagcaagcactaaacctagattgaaaagaacaaatttgcaagcgataaacttgtgaaaatagagttttggaatccaccaaaaattgagaaaaa 11658905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 164 - 249
Target Start/End: Complemental strand, 30052292 - 30052207
Alignment:
Q  164 tgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatag 249  Q
    |||||||||| | || || |||||||| ||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||    
T  30052292 tgacgcagtatggaatcgaagggttagaaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatag 30052207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 188 - 279
Target Start/End: Original strand, 8048989 - 8049080
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    ||||||||  ||| |||||||| ||||||||||||||||||| |||||| ||||||||||| || ||||| |||||||||||||| ||||||    
T  8048989 tagcaagcattaatcctagattaaaaagaaaaagtttgcaagtgacaaacttgtgaaaataaggctccgggatccaccagaaattgagaaaa 8049080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 188 - 281
Target Start/End: Complemental strand, 14238502 - 14238408
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaaaa 281  Q
    |||||| | |||||| || |||||||||||| |||||||||||||||||| ||||||||||| ||||||||| |||| |||||| ||| ||||||    
T  14238502 tagcaaacactaaacataaattgaaaagaaacaagtttgcaagcgacaaacttgtgaaaataaggttccggagtccatcagaaaataaaaaaaaa 14238408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 162 - 216
Target Start/End: Complemental strand, 29342115 - 29342061
Alignment:
Q  162 attgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaaga 216  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  29342115 attgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaaga 29342061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 200 - 280
Target Start/End: Complemental strand, 12882177 - 12882096
Alignment:
Q  200 aacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaaa 280  Q
    |||||||||||| |||| | ||||||  |||||||||| |||||||||||||||| |||||||||||||||||| |||||||    
T  12882177 aacctagattgagaagagacaagttttaaagcgacaaacttgtgaaaatagggtttcggaatccaccagaaattgagaaaaa 12882096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 187 - 280
Target Start/End: Complemental strand, 32361434 - 32361342
Alignment:
Q  187 ttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaaa 280  Q
    |||||||||| |||| ||||||||||||||||  |||||||||||| ||| |||| |||||| |||||||||||| || ||||||| |||||||    
T  32361434 ttagcaagcgttaaatctagattgaaaagaaat-gtttgcaagcgataaaattgtaaaaataaggttccggaatctacgagaaattgagaaaaa 32361342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 191 - 272
Target Start/End: Original strand, 33615530 - 33615612
Alignment:
Q  191 caagcgctaaacctagattgaaaa-gaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaatt 272  Q
    ||||||| |||||||||| ||||| ||| |||||||||||||||||| |||||||||||||||| | |||| ||||| |||||    
T  33615530 caagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaatt 33615612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 33215186 - 33215271
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaatt 272  Q
    |||||| ||||||| ||||||| |||||||| ||||||||||||||||||  |||||||||   |||||| |||||||||||||||    
T  33215186 tagcaaacgctaaatctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaatt 33215271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 270
Target Start/End: Complemental strand, 18727173 - 18727089
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtg-aaaata-gggttccggaatccaccagaaa 270  Q
    |||||| ||||||||||||||||||||  | ||||| |||||||||||| ||||| |||||| |||||| | |||||||||||||    
T  18727173 tagcaaacgctaaacctagattgaaaaacacaagttcgcaagcgacaaacttgtgaaaaataggggttctgaaatccaccagaaa 18727089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 279
Target Start/End: Original strand, 24443130 - 24443186
Alignment:
Q  223 ttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    |||||||||||||| || | ||||||||||||| ||||| |||||||||||||||||    
T  24443130 ttgcaagcgacaaacttataaaaatagggttccagaatcaaccagaaattaagaaaa 24443186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 218 - 281
Target Start/End: Original strand, 12778453 - 12778516
Alignment:
Q  218 aaagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaaaa 281  Q
    ||||||||||||||| ||  ||||||||||| ||||| |||||| |||||||||| ||||||||    
T  12778453 aaagtttgcaagcgataatcttgtgaaaataaggttctggaatctaccagaaattgagaaaaaa 12778516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 167 - 279
Target Start/End: Original strand, 18727846 - 18727960
Alignment:
Q  167 cgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaa-gaaa-aagtttgcaagcgacaaatttgtgaaaa-tagggttccggaatcca 263  Q
    ||||||||||||| ||||| | ||||| |||||||| ||||| ||||| |||| |||||||||||| | ||||  ||||||| || ||||||| ||||||    
T  18727846 cgcagtacgaaagtgtaggct-agcaaacgctaaacttagatagaaaaagaaataagtttgcaagcaataaatcggtgaaaaataaggttccgaaatcca 18727944  T
Q  264 ccagaaattaagaaaa 279  Q
    ||||||||| ||||||    
T  18727945 ccagaaattgagaaaa 18727960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 266
Target Start/End: Complemental strand, 22873880 - 22873801
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccacca 266  Q
    ||||||| | |||||||| |||||||||| | ||||||||| |||||||| ||||||||  | |||||||||||||||||    
T  22873880 tagcaagtgttaaacctaaattgaaaagagacaagtttgcatgcgacaaacttgtgaaataaaggttccggaatccacca 22873801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 223 - 289
Target Start/End: Complemental strand, 3536035 - 3535968
Alignment:
Q  223 ttgcaagcgacaaatttgtgaaaata-gggttccggaatccaccagaaattaagaaaaaatcttgaat 289  Q
    ||||||||||||||  | | |||||| |||||||||||||||||||||||| ||| ||||||| ||||    
T  3536035 ttgcaagcgacaaacctatcaaaataagggttccggaatccaccagaaattgagagaaaatctcgaat 3535968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 223 - 289
Target Start/End: Complemental strand, 3542246 - 3542179
Alignment:
Q  223 ttgcaagcgacaaatttgtgaaaata-gggttccggaatccaccagaaattaagaaaaaatcttgaat 289  Q
    ||||||||||||||  | | |||||| |||||||||||||||||||||||| ||| ||||||| ||||    
T  3542246 ttgcaagcgacaaacctatcaaaataagggttccggaatccaccagaaattgagagaaaatctcgaat 3542179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 5e-32; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 163 - 253
Target Start/End: Complemental strand, 8931310 - 8931220
Alignment:
Q  163 ttgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggtt 253  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||| ||||||||||||||||    
T  8931310 ttgacgcagtacggaagcgtagggttagcaagcgctaaacctagattgaaaaaaacaagtttgcaagcgataaacttgtgaaaatagggtt 8931220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 163 - 253
Target Start/End: Original strand, 50857443 - 50857533
Alignment:
Q  163 ttgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggtt 253  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||| ||||||||||||||||    
T  50857443 ttgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaataagtttgtaagcgacaaacttgtgaaaatagggtt 50857533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 163 - 279
Target Start/End: Complemental strand, 12944206 - 12944090
Alignment:
Q  163 ttgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatc 261  Q
    ||||||||  ||||||||||||| | ||||||||||||| |||||||||||||||| |||||||||| ||||||| |||| |||||||||||| ||||||    
T  12944206 ttgacgcaacacgaaagcgtaggct-agcaagcgctaaatctagattgaaaagaaacaagtttgcaaacgacaaacttgtaaaaatagggttctggaatc 12944108  T
Q  262 caccagaaattaagaaaa 279  Q
    ||||||||||| ||||||    
T  12944107 caccagaaattgagaaaa 12944090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 188 - 279
Target Start/End: Complemental strand, 43681528 - 43681435
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaagaaaa--agtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    ||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||| | ||| ||||| |||||||||||||||||    
T  43681528 tagcaagcgctaaacctagattgaaaaaaaaacaagtttgcaagcgacaaatttgtgaaaatagagatccagaatctaccagaaattaagaaaa 43681435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 163 - 280
Target Start/End: Complemental strand, 31915639 - 31915523
Alignment:
Q  163 ttgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatcc 262  Q
    |||||| |||||| ||||| ||| | ||||||| |||||| ||| ||||||  || |||||||||||||||||| |||||||||||||||||||||||||    
T  31915639 ttgacgtagtacggaagcgcaggct-agcaagcactaaacttaggttgaaagaaacaagtttgcaagcgacaaacttgtgaaaatagggttccggaatcc 31915541  T
Q  263 accagaaattaagaaaaa 280  Q
    |||||||||| |||||||    
T  31915540 accagaaattgagaaaaa 31915523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 202 - 281
Target Start/End: Original strand, 33152756 - 33152836
Alignment:
Q  202 cctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaaaa 281  Q
    ||||||||||||||||| |||||||||||||||||| ||  || |||||||||||||||||||||||||||||||||||||    
T  33152756 cctagattgaaaagaaacaagtttgcaagcgacaaacttacgacaatagggttccggaatccaccagaaattaagaaaaaa 33152836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 188 - 270
Target Start/End: Original strand, 28660769 - 28660852
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaa 270  Q
    |||||| |||||||||||||| || |||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  28660769 tagcaaacgctaaacctagatagataagaaacaagtttgcaagcgacaaacttgtgaaaatagggttccgaaatccaccagaaa 28660852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 164 - 250
Target Start/End: Original strand, 13443988 - 13444074
Alignment:
Q  164 tgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagg 250  Q
    ||||||||| || |||| |||||||| ||||| |||||||||||| |||||||| |||||||||||||||||| |||||||||||||    
T  13443988 tgacgcagttcggaagcatagggttaacaagcactaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagg 13444074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 188 - 279
Target Start/End: Complemental strand, 10927258 - 10927168
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaa-gaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    |||||| ||||||||||||| |||||| ||| |||||||||||||||||| |||||||||  |||||||||||||||||||||||| ||||||    
T  10927258 tagcaaacgctaaacctagactgaaaaagaacaagtttgcaagcgacaaacttgtgaaaa--gggttccggaatccaccagaaattgagaaaa 10927168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 195 - 279
Target Start/End: Complemental strand, 50713772 - 50713687
Alignment:
Q  195 cgctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    |||||||||||||||||||||| | ||||| ||| |||||||| |||||||||||||||| |||||||||||||||||| ||||||    
T  50713772 cgctaaacctagattgaaaagagacaagttcgcaggcgacaaacttgtgaaaatagggtttcggaatccaccagaaattgagaaaa 50713687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 31913442 - 31913359
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaat 271  Q
    ||||||||||||||||||| ||||||  || |||||||||||||||||| |||| |||||||| ||||| ||||||||||||||    
T  31913442 tagcaagcgctaaacctaggttgaaagaaacaagtttgcaagcgacaaacttgtaaaaataggtttccgaaatccaccagaaat 31913359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 188 - 279
Target Start/End: Complemental strand, 239753 - 239661
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    ||||||| ||||||| || ||| |||||||| ||||| ||||||| ||||||| ||||||||||||||||||||||| | |||||||||||||    
T  239753 tagcaagggctaaacttatattaaaaagaaacaagttagcaagcgtcaaatttatgaaaatagggttccggaatccaactgaaattaagaaaa 239661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 196 - 279
Target Start/End: Complemental strand, 8221546 - 8221462
Alignment:
Q  196 gctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    |||||||| |||||||| ||| | |||||||||| ||||||| || |||||||||||||| ||||||||||||||||| ||||||    
T  8221546 gctaaaccaagattgaatagagacaagtttgcaaacgacaaacttatgaaaatagggttctggaatccaccagaaattgagaaaa 8221462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 188 - 279
Target Start/End: Complemental strand, 10928355 - 10928263
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    ||||||| |||||||||||||| |||||| | ||||||| ||| |||||| ||||||||||| |||| |||||||||| | ||||| ||||||    
T  10928355 tagcaagtgctaaacctagattaaaaagatataagtttgtaagtgacaaacttgtgaaaataaggtttcggaatccactataaattgagaaaa 10928263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 192 - 279
Target Start/End: Complemental strand, 21903813 - 21903726
Alignment:
Q  192 aagcgctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    ||||||||||| ||||||||||||||| ||||||| | ||||||| || |||||||||||||| |||||||||| | ||||| ||||||    
T  21903813 aagcgctaaacttagattgaaaagaaataagtttgtaggcgacaactt-gtgaaaatagggtttcggaatccacaaaaaattgagaaaa 21903726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 164 - 272
Target Start/End: Complemental strand, 23987665 - 23987553
Alignment:
Q  164 tgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaa-gaaaaagtttgcaagcgacaaatttgtgaaaatag----ggttccgga 258  Q
    ||||||| | || ||||||||||| |||||||||| ||||||||| ||||| ||| || ||||||| ||||||| |||||||||||     |||||||||    
T  23987665 tgacgcaattcggaagcgtagggt-agcaagcgctgaacctagatagaaaaagaacaactttgcaaacgacaaacttgtgaaaatatagaaggttccgga 23987567  T
Q  259 atccaccagaaatt 272  Q
    ||||||||||||||    
T  23987566 atccaccagaaatt 23987553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 188 - 265
Target Start/End: Complemental strand, 10925803 - 10925728
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatccacc 265  Q
    |||||||||||||||||| ||||||||  | || ||||||||||||||| |||| |||||| ||||| ||||||||||    
T  10925803 tagcaagcgctaaacctaaattgaaaa--acaattttgcaagcgacaaacttgtaaaaatatggttctggaatccacc 10925728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 280
Target Start/End: Original strand, 40058102 - 40058219
Alignment:
Q  164 tgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtg-aaaatagggttccggaatc 261  Q
    |||||| ||||| ||||||||| | |||||||  |||||||| || ||||||||| |||||||||||||||||| || || ||||||||||| | |||||    
T  40058102 tgacgcggtacggaagcgtaggct-agcaagcagtaaacctaaatagaaaagaaataagtttgcaagcgacaaacttatgaaaaatagggtttcagaatc 40058200  T
Q  262 caccagaaattaagaaaaa 280  Q
     ||||  |||| |||||||    
T  40058201 aaccaacaattgagaaaaa 40058219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 190 - 272
Target Start/End: Original strand, 8967828 - 8967912
Alignment:
Q  190 gcaagcgctaaacctagattga--aaagaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaatt 272  Q
    ||||||| ||||||||||| ||  |||||| ||||||||||  ||||||  | ||||||||||||||| |||||||||| |||||    
T  8967828 gcaagcgttaaacctagatagagaaaagaacaagtttgcaaatgacaaacctatgaaaatagggttccagaatccaccaaaaatt 8967912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 13441612 - 13441673
Alignment:
Q  170 agtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcg 231  Q
    |||||| ||| ||| |||||||||||||||||| ||||| |||||||| || ||||||||||    
T  13441612 agtacggaagagtatggttagcaagcgctaaacttagatagaaaagaacaattttgcaagcg 13441673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 279
Target Start/End: Complemental strand, 9031083 - 9030991
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    |||||||  ||||||||| ||||||||| || |||||||||||| | ||| || |||||||||||||   |||||||||| ||||| ||||||    
T  9031083 tagcaagtactaaacctatattgaaaaggaataagtttgcaagcaataaacttatgaaaatagggttgtagaatccaccataaattgagaaaa 9030991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 253
Target Start/End: Original strand, 28661091 - 28661157
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggtt 253  Q
    ||||||| |||||||||| ||||| |||||| |||||||||||||| |||  ||| |||||||||||    
T  28661091 tagcaagtgctaaacctaaattgataagaaacaagtttgcaagcgaaaaacctgtaaaaatagggtt 28661157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 289
Target Start/End: Complemental strand, 8931195 - 8931154
Alignment:
Q  248 agggttccggaatccaccagaaattaagaaaaaatcttgaat 289  Q
    ||||||||||||||||||||||||| ||| ||||||| ||||    
T  8931195 agggttccggaatccaccagaaattgagagaaaatctcgaat 8931154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 281
Target Start/End: Complemental strand, 26981568 - 26981481
Alignment:
Q  196 gctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaa--atagggttccggaatccaccagaaattaagaaaaaa 281  Q
    |||||| |||||||||||  || |||||||||||||| ||| |||| |||  ||| |||| || |||||| |||||||||| ||||||    
T  26981568 gctaaatctagattgaaagaaacaagtttgcaagcgaaaaacttgtaaaaatatatggtttcgaaatccatcagaaattaaaaaaaaa 26981481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 36694224 - 36694268
Alignment:
Q  235 aatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    ||||| ||||||||||||| ||||||||| |||||||| ||||||    
T  36694224 aatttatgaaaatagggttgcggaatccatcagaaattgagaaaa 36694268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 36710325 - 36710369
Alignment:
Q  235 aatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    ||||| ||||||||||||| ||||||||| |||||||| ||||||    
T  36710325 aatttatgaaaatagggttgcggaatccatcagaaattgagaaaa 36710369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 8e-31; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 165 - 253
Target Start/End: Original strand, 21848966 - 21849054
Alignment:
Q  165 gacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggtt 253  Q
    ||||||||||| ||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||| ||||||||||||||||    
T  21848966 gacgcagtacggaagcgtagggttagcaagcgccaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 21849054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 163 - 253
Target Start/End: Original strand, 40778785 - 40778875
Alignment:
Q  163 ttgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggtt 253  Q
    ||||||||||||| ||||| ||||||| |||||||||||||||||| |||||||| |||||||||||||||||| |||| |||||||||||    
T  40778785 ttgacgcagtacggaagcgcagggttaacaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtaaaaatagggtt 40778875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 188 - 280
Target Start/End: Complemental strand, 492633 - 492540
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaaa 280  Q
    ||||||||||||||  ||||||||||||||| |||||||||||||||||| ||||||| |||||||| ||||||| ||||||||||||||||||    
T  492633 tagcaagcgctaaatttagattgaaaagaaacaagtttgcaagcgacaaacttgtgaagatagggtttcggaatcaaccagaaattaagaaaaa 492540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 159 - 268
Target Start/End: Original strand, 8456375 - 8456483
Alignment:
Q  159 ataattgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccgg 257  Q
    |||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||| || |||| |||||||| |||||     
T  8456375 ataattgacgcagt-cggaagcgtagggt-agcaagcgctaaacctagattgaaaagaaacaagttcgcaagcgacgaacttgtaaaaataggattccga 8456472  T
Q  258 aatccaccaga 268  Q
    |||||||||||    
T  8456473 aatccaccaga 8456483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 211 - 340
Target Start/End: Original strand, 19497351 - 19497483
Alignment:
Q  211 aaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaaaatcttgaatgagtttattgaat----aatt 306  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||| |||||| || ||||| |||||||||||  ||  |  |||||||||    || |    
T  19497351 aaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttccgaaatccatcaaaaattgagaaaaaatctctaa-aatattattgaatcaaaaagt 19497449  T
Q  307 gcctcttaggctacataatgttctgtttaaatag 340  Q
    |||||||||||| |||||||||||||||||||||    
T  19497450 gcctcttaggctgcataatgttctgtttaaatag 19497483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 188 - 279
Target Start/End: Complemental strand, 22440923 - 22440832
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    ||||||| ||||||||||||| |||||||| | ||| |||||||||||| || ||| ||||||||||| |||||||| ||||||||||||||    
T  22440923 tagcaagtgctaaacctagatagaaaagaacatgttcgcaagcgacaaacttatgataatagggttccagaatccactagaaattaagaaaa 22440832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 185 - 279
Target Start/End: Complemental strand, 26140412 - 26140317
Alignment:
Q  185 ggttagcaagcgctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    ||||||||| ||||||| |||||||||||  ||| ||| |||||||||||||| || ||||||||||||||  |||||||||| ||||| ||||||    
T  26140412 ggttagcaaacgctaaatctagattgaaagaaaacaagattgcaagcgacaaacttatgaaaatagggttcaagaatccaccaaaaattgagaaaa 26140317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 191 - 279
Target Start/End: Complemental strand, 18252479 - 18252390
Alignment:
Q  191 caagcgctaaacctagattgaaa-agaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    |||||| ||||||||||| |||| |||| ||||||||||||||||||  ||||||||||||||||   ||||||| ||||||| ||||||    
T  18252479 caagcgttaaacctagatagaaatagaacaagtttgcaagcgacaaacctgtgaaaatagggttctataatccactagaaattgagaaaa 18252390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 198 - 260
Target Start/End: Original strand, 9868438 - 9868501
Alignment:
Q  198 taaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaat 260  Q
    |||| ||| |||||||||||| |||||| ||||| ||||| |||||||||||||||||||||||    
T  9868438 taaatctatattgaaaagaaacaagtttacaagcaacaaacttgtgaaaatagggttccggaat 9868501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 197
Target Start/End: Original strand, 21844436 - 21844470
Alignment:
Q  163 ttgacgcagtacgaaagcgtagggttagcaagcgc 197  Q
    ||||||||||||| |||||||||||||||||||||    
T  21844436 ttgacgcagtacggaagcgtagggttagcaagcgc 21844470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 164 - 289
Target Start/End: Original strand, 46733 - 46859
Alignment:
Q  164 tgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaa-tagggttccggaatcc 262  Q
    |||||||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||  | | |||| || |||||||||||||    
T  46733 tgacgcagtacggaagcgtagggtgagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacctatcaaaattaaggttccggaatcc 46832  T
Q  263 accagaaattaagaaaaaatcttgaat 289  Q
    |||| ||||| ||| ||||||| ||||    
T  46833 accaaaaattgagagaaaatctcgaat 46859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 164 - 253
Target Start/End: Original strand, 45262 - 45351
Alignment:
Q  164 tgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggtt 253  Q
    |||| ||||||| |||||||||||||||||||||||||  |||||   |||||| |||||||||||||||||| || |||||||| ||||    
T  45262 tgacacagtacggaagcgtagggttagcaagcgctaaaattagataagaaagaacaagtttgcaagcgacaaacttatgaaaataaggtt 45351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 164 - 253
Target Start/End: Original strand, 6659331 - 6659419
Alignment:
Q  164 tgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggtt 253  Q
    |||||||||||| ||| ||||| ||||||||||||||| |||||| |||||||| |||||||||||||||||| ||||||||||||||||    
T  6659331 tgacgcagtacggaagtgtagg-ttagcaagcgctaaatctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 6659419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 193 - 279
Target Start/End: Original strand, 18689549 - 18689636
Alignment:
Q  193 agcgctaaacctagattgaaaagaaaa-agtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    ||||||||||||||||||||||||||| |||||||| |||||||| |||| ||||||||||| | |||||||||||||||| ||||||    
T  18689549 agcgctaaacctagattgaaaagaaaaaagtttgcatgcgacaaacttgtaaaaatagggttgcagaatccaccagaaattgagaaaa 18689636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 188 - 279
Target Start/End: Original strand, 13991402 - 13991494
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||||  || ||||||| ||||| |||||||||||||| || ||||||    
T  13991402 tagcaagcgctaaatctagattgaaaagaaacaagtttgcaagcgacaaacatgcgaaaataaggttctggaatccaccagaatttgagaaaa 13991494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 165 - 255
Target Start/End: Original strand, 7723665 - 7723753
Alignment:
Q  165 gacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggttcc 255  Q
    ||||||||||  ||||||||| | |||||||||||||| |||||||||||||| |||||||||||| ||||| ||||||||||||||||||    
T  7723665 gacgcagtacagaagcgtaggct-agcaagcgctaaac-tagattgaaaagaacaagtttgcaagctacaaacttgtgaaaatagggttcc 7723753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 164 - 270
Target Start/End: Complemental strand, 24667745 - 24667640
Alignment:
Q  164 tgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatcca 263  Q
    |||||||||| | ||||||||| | |||||||| ||||||||||| |||||||| ||| | ||| || ||||| ||||||||||||||||||||||||||    
T  24667745 tgacgcagtatggaagcgtaggct-agcaagcgttaaacctagatagaaaagaagaagctcgcaggcaacaaacttgtgaaaatagggttccggaatcca 24667647  T
Q  264 ccagaaa 270  Q
    | |||||    
T  24667646 ctagaaa 24667640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 164 - 280
Target Start/End: Complemental strand, 40206237 - 40206122
Alignment:
Q  164 tgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatcca 263  Q
    ||||||| |||| ||||||||| | ||||||||||||| ||| |||||||   | ||||| |||||||||||| |||||||||||| ||| |||||| ||    
T  40206237 tgacgcactacggaagcgtaggct-agcaagcgctaaatctaaattgaaagagacaagttcgcaagcgacaaacttgtgaaaatagtgtttcggaattca 40206139  T
Q  264 ccagaaattaagaaaaa 280  Q
    ||||||||| |||||||    
T  40206138 ccagaaattgagaaaaa 40206122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 188 - 279
Target Start/End: Original strand, 7724100 - 7724189
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    ||||||| |||||||||| |||||||||||  |||||||| ||||||||| |   ||||||||||||||||||||||||||||||| ||||||    
T  7724100 tagcaagtgctaaacctatattgaaaagaagcaagtttgcgagcgacaaact---gaaaatagggttccggaatccaccagaaattgagaaaa 7724189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 198 - 279
Target Start/End: Original strand, 38888023 - 38888105
Alignment:
Q  198 taaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    ||||||||||||||||| ||| || ||||||||||||||| |||||||||||||||| |||||||||  ||||||| ||||||    
T  38888023 taaacctagattgaaaataaacaaatttgcaagcgacaaacttgtgaaaatagggtttcggaatccattagaaattgagaaaa 38888105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 199 - 279
Target Start/End: Complemental strand, 10494958 - 10494877
Alignment:
Q  199 aaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    |||||||||| ||||||||| ||||||||||| ||||||  ||||||||||| |||||||||| ||||||||||| ||||||    
T  10494958 aaacctagatggaaaagaaacaagtttgcaagtgacaaacctgtgaaaatagagttccggaattcaccagaaattgagaaaa 10494877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 192 - 279
Target Start/End: Complemental strand, 7634142 - 7634054
Alignment:
Q  192 aagcgctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    ||||| |||||||||||||||||| || |||||||||| ||| ||| ||||| |||||| |||| ||||||||||||||||| ||||||    
T  7634142 aagcgttaaacctagattgaaaaggaacaagtttgcaaacgataaacttgtggaaatagagttctggaatccaccagaaattgagaaaa 7634054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 279
Target Start/End: Original strand, 22486799 - 22486889
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaa-gaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    |||||||||||||||||| || ||||| ||  ||||||||||||||||| || ||||||||||| ||||||||||||||||||||| ||||||    
T  22486799 tagcaagcgctaaacctatatagaaaaagaccaagtttgcaagcgacaactt-gtgaaaatagg-ttccggaatccaccagaaattgagaaaa 22486889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 197 - 279
Target Start/End: Original strand, 18657074 - 18657157
Alignment:
Q  197 ctaaacctagattgaaaagaaaa-agtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    ||||||||||||||||||||||| |||||||| |||||||| |||| |||||||| || | ||||||||| |||||| ||||||    
T  18657074 ctaaacctagattgaaaagaaaaaagtttgcatgcgacaaacttgtaaaaataggatttcagaatccaccggaaattgagaaaa 18657157  T

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Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 189 - 279
Target Start/End: Complemental strand, 15848469 - 15848379
Alignment:
Q  189 agcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    ||||| ||||||| |||||||||||||||| |  ||||||| |||||| ||||||||| || |||||| ||||||||| ||||| ||||||    
T  15848469 agcaaacgctaaatctagattgaaaagaaacaagttgcaagtgacaaaattgtgaaaagagagttccgaaatccaccaaaaattgagaaaa 15848379  T

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Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 160 - 280
Target Start/End: Complemental strand, 19935579 - 19935460
Alignment:
Q  160 taattgacgcagtacgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaa 259  Q
    |||||||||||||||  ||||||||| | ||| ||||||||||  |||| ||||| || || ||||||||||||||| || |||||||||||||  ||||    
T  19935579 taattgacgcagtacagaagcgtaggct-agccagcgctaaactcagatagaaaaaaataaatttgcaagcgacaaacttatgaaaatagggttatggaa 19935481  T
Q  260 tccaccagaaattaagaaaaa 280  Q
    | || || ||||| |||||||    
T  19935480 ttcatcaaaaattgagaaaaa 19935460  T

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Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 188 - 254
Target Start/End: Original strand, 54700620 - 54700687
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttc 254  Q
    |||||| ||||||||||| |||||||||||| ||||||||||| |||||| |||||| ||||||||||    
T  54700620 tagcaaacgctaaacctatattgaaaagaaacaagtttgcaagtgacaaacttgtgagaatagggttc 54700687  T

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Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 279
Target Start/End: Complemental strand, 9260607 - 9260547
Alignment:
Q  219 aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    |||||||||| ||||||| ||| |||||||||||| | |||||||||||||||| ||||||    
T  9260607 aagtttgcaaacgacaaacttgcgaaaatagggtttcagaatccaccagaaattgagaaaa 9260547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 279
Target Start/End: Complemental strand, 3675179 - 3675085
Alignment:
Q  186 gttagcaagcgctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    |||| |||| ||||||  ||||||||||||||| |||||||||| ||| ||||   ||||| ||  ||| |||||||||||||||||||||||||    
T  3675179 gttaacaagtgctaaatatagattgaaaagaaacaagtttgcaaacgataaatccatgaaattaaagtttcggaatccaccagaaattaagaaaa 3675085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 13990732 - 13990785
Alignment:
Q  219 aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaatt 272  Q
    |||||||||||  ||||| ||||||||||||||||| |||||||| ||||||||    
T  13990732 aagtttgcaagtaacaaacttgtgaaaatagggttctggaatccatcagaaatt 13990785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 340
Target Start/End: Original strand, 13085214 - 13085302
Alignment:
Q  255 cggaatccaccagaaattaagaaaaaatcttgaatgagtttattgaataat----tgcctcttaggctacataatgttctgtttaaatag 340  Q
    |||||||||||| ||||| ||| ||||||| |||| | ||||||||||||     || |||||||||| |||||||||||||||||||||    
T  13085214 cggaatccacca-aaattgagagaaaatctcgaataattttattgaataaaaaagtgtctcttaggctgcataatgttctgtttaaatag 13085302  T

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Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 279
Target Start/End: Original strand, 17254906 - 17254998
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaa-gaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    |||||| |||||||| ||||||||| | ||| || ||| ||||||||||| |||||||||||| |||| | ||||| | ||||||| ||||||    
T  17254906 tagcaaacgctaaacttagattgaagatgaacaaattttcaagcgacaaacttgtgaaaatagagttctgaaatcccctagaaattgagaaaa 17254998  T

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Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 279
Target Start/End: Original strand, 21433594 - 21433678
Alignment:
Q  196 gctaaacctagattgaaaa-gaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    ||||||||||||| ||||| ||| || || |||||||||||| || ||||||||||||||| |||| || || ||||| ||||||    
T  21433594 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggttccagaattcatcataaattgagaaaa 21433678  T

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Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 270
Target Start/End: Complemental strand, 28898032 - 28897954
Alignment:
Q  195 cgctaaacctagattgaaaagaaaaa---gtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaa 270  Q
    ||||||| |||||||||||| |||||   || |||||  || |||||||||||||||  ||||||||||||||||||||    
T  28898032 cgctaaatctagattgaaaaaaaaaaaaagtctgcaaatgataaatttgtgaaaataatgttccggaatccaccagaaa 28897954  T

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Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 50515918 - 50515978
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaat 247  Q
    |||||||||||| || |||| ||| |||||| |||||||||||||||||| ||||||||||    
T  50515918 tagcaagcgctacacttagactgagaagaaacaagtttgcaagcgacaaacttgtgaaaat 50515978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 279
Target Start/End: Original strand, 53477234 - 53477329
Alignment:
Q  187 ttagcaagcgctaaacctagattga---aaagaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    ||||||| |||||||||||||| ||   ||| || |||||| |||||| ||||  ||||||||| |||||   |||||||||||||||| ||||||    
T  53477234 ttagcaaacgctaaacctagatagagtaaaaaaacaagtttacaagcgtcaaacctgtgaaaatggggttttagaatccaccagaaattgagaaaa 53477329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 188 - 279
Target Start/End: Complemental strand, 9769 - 9676
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaat--ttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    ||||||||| |||||||||||||||||||| |||||| |||||||| ||   ||||||||||||||||||| ||||||||||||||| ||||||    
T  9769 tagcaagcggtaaacctagattgaaaagaacaagtttccaagcgactaacacttgtgaaaatagggttccgaaatccaccagaaattgagaaaa 9676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 192 - 279
Target Start/End: Complemental strand, 37772 - 37686
Alignment:
Q  192 aagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    |||||||||||||||||||||||||| |||||||||||||||||| || |||||||| ||||||  |||| ||||||||||| |||||    
T  37772 aagcgctaaacctagattgaaaagaacaagtttgcaagcgacaaacttatgaaaata-ggttccaaaatcgaccagaaattaggaaaa 37686  T

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Target: scaffold0054; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 200 - 271
Target Start/End: Complemental strand, 49375 - 49304
Alignment:
Q  200 aacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaat 271  Q
    |||||||||||| ||||| |||||||||||||||||| || |||||||||||||||  ||||||||| ||||    
T  49375 aacctagattgagaagaacaagtttgcaagcgacaaacttatgaaaatagggttccaaaatccaccataaat 49304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 188 - 280
Target Start/End: Complemental strand, 1723 - 1631
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaaa 280  Q
    ||||||||| ||||||||||||||||  || |||||||||| ||||||| |||| |||||| ||||| |||||||||||||| || |||||||    
T  1723 tagcaagcgttaaacctagattgaaagaaacaagtttgcaaacgacaaacttgtcaaaatatggttctggaatccaccagaatttgagaaaaa 1631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 188 - 281
Target Start/End: Complemental strand, 14912 - 14819
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaaaa 281  Q
    ||||||||||||||||| ||||||||  || ||||| |||||||| ||| |||||||||||||  |||||||||||||| ||||| | ||||||    
T  14912 tagcaagcgctaaaccttgattgaaataaataagttggcaagcgaaaaacttgtgaaaataggaatccggaatccaccaaaaattgaaaaaaaa 14819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 191 - 279
Target Start/End: Complemental strand, 16109 - 16021
Alignment:
Q  191 caagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    |||| ||||||||||||| |||||||| ||||||||||| ||||||  | |||||||||  ||   |||||||||||||||| ||||||    
T  16109 caagtgctaaacctagatagaaaagaacaagtttgcaagtgacaaacatctgaaaatagtattatagaatccaccagaaatttagaaaa 16021  T

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Target: scaffold0024 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 188 - 280
Target Start/End: Complemental strand, 145800 - 145707
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaagaaa-aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaaa 280  Q
    |||||| |||||||||||||||||||| ||  |||||||||||||||||  |||| ||||||||||||  |||||||||| ||||| |||||||    
T  145800 tagcaatcgctaaacctagattgaaaaaaatcaagtttgcaagcgacaagcttgtaaaaatagggttctagaatccaccaaaaattgagaaaaa 145707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 266
Target Start/End: Original strand, 143975 - 144022
Alignment:
Q  219 aagtttgcaagcgacaaatttgtgaaaatagggttccggaatccacca 266  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||    
T  143975 aagtttgcaagcgaaaaatttgtgaaaataggtttccggaatccacca 144022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 280
Target Start/End: Complemental strand, 17705 - 17613
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaaa 280  Q
    ||||||||| ||||||||||||||||  || |||||||||| ||||||| |||| |||||| ||||| |||||||||| ||| || |||||||    
T  17705 tagcaagcgttaaacctagattgaaagaaacaagtttgcaaacgacaaacttgtcaaaatatggttctggaatccacctgaatttgagaaaaa 17613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 248
Target Start/End: Original strand, 11612 - 11672
Alignment:
Q  188 tagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaata 248  Q
    ||||||||  ||| |||||||| ||||||||||||||||||| |||||| |||||||||||    
T  11612 tagcaagcattaatcctagattaaaaagaaaaagtttgcaagtgacaaacttgtgaaaata 11672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 174 - 261
Target Start/End: Complemental strand, 16476 - 16390
Alignment:
Q  174 cgaaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatc 261  Q
    |||||||||||| |||| || | ||||||||||||| |||| ||  ||||||||||||||||| ||| |||||||| ||||| |||||    
T  16476 cgaaagcgtagg-ttagtaaacactaaacctagattaaaaaaaatgagtttgcaagcgacaaacttgagaaaatagagttcccgaatc 16390  T

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Target: scaffold0184 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 277
Target Start/End: Original strand, 14175 - 14238
Alignment:
Q  214 agaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaa 277  Q
    |||| |||||||||||||| |||||||||||||||| |||  |||||||| || ||||| ||||    
T  14175 agaacaagtttgcaagcgataaatttgtgaaaatagtgttttggaatccatcaaaaattgagaa 14238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 192 - 279
Target Start/End: Original strand, 15092 - 15179
Alignment:
Q  192 aagcgctaaacctagattgaaaagaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaaaa 279  Q
    |||||||||| |||||||||||   | |||||   ||||||| || |||| ||||||||||||  |||||||||||||||| ||||||    
T  15092 aagcgctaaaactagattgaaagagacaagttcctaagcgacgaacttgtaaaaatagggttctagaatccaccagaaattgagaaaa 15179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 277
Target Start/End: Complemental strand, 58669 - 58606
Alignment:
Q  214 agaaaaagtttgcaagcgacaaatttgtgaaaatagggttccggaatccaccagaaattaagaa 277  Q
    |||| |||||||||||||| |||||||||||||||| |||  |||||||| || ||||| ||||    
T  58669 agaacaagtttgcaagcgataaatttgtgaaaatagtgttttggaatccatcaaaaattgagaa 58606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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