View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0743_high_37 (Length: 413)

Name: NF0743_high_37
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0743_high_37
NF0743_high_37
[»] chr4 (3 HSPs)
chr4 (51-413)||(19419363-19419728)
chr4 (154-389)||(19426178-19426414)
chr4 (51-145)||(19426042-19426136)


Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 51 - 413
Target Start/End: Original strand, 19419363 - 19419728
Alignment:
Q  51 ataatttacatgggagatcattcacaccccaattcagagtctgtcatcagagcaaaccatgagatactagcttcagtcactggaaggtatgacaaataac 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19419363 ataatttacatgggagatcattcacaccccaattcagagtctgtcgtcagagcaaaccatgagatactagcttcagtcactggaaggtatgacaaataac 19419462  T
Q  151 tacgtgttcttttaagcttcata---atgtgtgtgaatgtgaacattttgaaatagagtaatttaggctaaaataaacatgctctatcaaatattaatta 247  Q
    || |||||||||||||||||| |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19419463 tatgtgttcttttaagcttcaaatttatgtgtgtgaatgtgaacattttgaaatagagtaatttaggctaaaataaacatgctctatcaaatattaatta 19419562  T
Q  248 atacttttaacatttcagtctcgatgatgcaaagacttcagcactacaccattatagtaaaagctttcgaggcttttcggctatgattacgccagagcaa 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||    
T  19419563 atacttttaacatttcagtctcgatgatgcaaagacttcagcactacaccattatagtaaaagctttcgaggcttttcggctatgattacgttggagcaa 19419662  T
Q  348 gctaataaacttgcaggtattgtactccagcattatatctttctaatttctatcttcttactttat 413  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19419663 gctaataaacttgcaggcattgtactccagcattatatctttctaatttctatcttcttactttat 19419728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 154 - 389
Target Start/End: Original strand, 19426178 - 19426414
Alignment:
Q  154 gtgttcttttaagcttcata---atgtgtgtgaatgtgaacattttgaaatagagtaatttaggctaaaataaacatgctctatcaaatattaattaata 250  Q
    |||||||||||||||| |||   |||||||||| ||||||||||   |||| ||||||||||||||||||||||| |||||||||||||||||||||||     
T  19426178 gtgttcttttaagcttgatatttatgtgtgtgagtgtgaacattca-aaatggagtaatttaggctaaaataaacttgctctatcaaatattaattaatt 19426276  T
Q  251 cttttaacatttcagtctcgatgatgcaaagacttcagcactacaccattatagtaaaagctttcgaggcttttcggctatgattacgccagagcaagct 350  Q
    || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19426277 ctct-aacatttcagtctcgatgatgcaaagacttcagcactacaccattatagtaaaagctttcgaggcttttcggctatgattacgccagagcaagct 19426375  T
Q  351 aataaacttgcaggtattgtactccagcattatatcttt 389  Q
    |||||||||||||||| | || ||||  |||||||||||    
T  19426376 aataaacttgcaggtactatattccaatattatatcttt 19426414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 51 - 145
Target Start/End: Original strand, 19426042 - 19426136
Alignment:
Q  51 ataatttacatgggagatcattcacaccccaattcagagtctgtcatcagagcaaaccatgagatactagcttcagtcactggaaggtatgacaa 145  Q
    ||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  19426042 ataatttacatgggagatcattcgcaccccgattccgagtctgtcatcagagcaaaccatgagatactagcttcagttactggaaggcatgacaa 19426136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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