View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0743_high_4 (Length: 708)
Name: NF0743_high_4
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 372; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 136 - 700
Target Start/End: Original strand, 41703717 - 41704299
Alignment:
| Q |
136 |
cttctttcgatgattcattgccttttctccataatcttactatatggtctggtgtnnnnnnnnnnnncatgtaggcagacagtgcaggattattgaacta |
235 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
41703717 |
cttctttcgatggttcattgccttttctccataatcttacaatatggtctggtgcaaaaaagaaaaacatgtaggcagacagtgcaggattattgaacta |
41703816 |
T |
|
| Q |
236 |
ttat----ccaaggtagatggactataacattatagtatccttgttagctaagacgttttgttaggttttaatgaacaattaactcatgttagttcttag |
331 |
Q |
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|||| |||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
41703817 |
ttatatatccaaggta-------tataacattataggatccttgttagctaagacgtttttttaggttttaatgaacaattaactcatgttagttcttag |
41703909 |
T |
|
| Q |
332 |
ttttgaaactataataca---------------------taacaagtgatattccacctcttgtttaccttggcactatacacaatccgaagacaccacc |
410 |
Q |
| |
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|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41703910 |
ttttgaaagtataatacagatgttagcttgtataatacataacaagtgatattccacctcttgtttaccttggcactatacacaatccgaagacaccacc |
41704009 |
T |
|
| Q |
411 |
tcttgtaatgtcattcttttttattgagtaccaataactagacattgaggtgagctaacgttagttataattagagaatcattagatattgttagagttt |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
41704010 |
tcttgtaatgtcattcttttttattgagtaccaataactagacattgaggtgagctaacgttagttataattagagaatcattagatattgttaaaagta |
41704109 |
T |
|
| Q |
511 |
gttaa-aagtagttactaattggttacaaattagttcatgtttgttagtttagctagttaagatcaatatataatgtgaacaacaaaaaattaaatctta |
609 |
Q |
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|||| || | ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41704110 |
gttactaattggttacta-ttagttacaaattagttcatgtttgttagtttagctagttaagatcaatatataatgtgaacaacaaaaaattaaatctta |
41704208 |
T |
|
| Q |
610 |
cacatccaaattttagaatgcggaaaatgcaagttcataacattttccctatcggattttaaaattcaaatgtgtaaaatgcacctatgat |
700 |
Q |
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| T |
41704209 |
cacatccaaattttagaatgcggaaaatgcaagttcataacattttccctatcggattttaaaattcaaatgtgtaaaatgcacctatgat |
41704299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 64 - 344
Target Start/End: Complemental strand, 41467463 - 41467192
Alignment:
| Q |
64 |
gcaaatttgccaatgcagttgacagagtcaaaagaaaattttcttccagcatctgtgaaacctccacttctacttctttcgatgattcattgccttttct |
163 |
Q |
| |
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||||||||| |||||||||||||| ||||||||||||||||||| |||| | |||||||||| ||||||||||| | ||||| ||||| ||| |
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| T |
41467463 |
gcaaatttggcaatgcagttgacactgtcaaaagaaaattttctttcagcgacagtgaaacctcgacttctacttcctccgatggttcatg------tct |
41467370 |
T |
|
| Q |
164 |
ccataatcttactatatggtctggtgtnnnnnnnnnnnncatgtaggcagacagtgcaggattattgaactattatccaaggtagatggactataacatt |
263 |
Q |
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| |||||||||| ||| |||||| || ||||||| ||||||||||||||| ||||||||||| |||||| || | |||||| ||| |
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| T |
41467369 |
cgataatcttacaataaggtctgatgcaaaaaagaaaaagatgtaggtagacagtgcaggatt---gaactattatctaaggtaaataggctataaaatt |
41467273 |
T |
|
| Q |
264 |
atagtatccttgttagctaagacgttttgttaggttttaatgaacaattaactcatgttagttcttagttttgaaactata |
344 |
Q |
| |
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||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
41467272 |
atagtatccttgttagccatgaccttttgttaggttttaatgaacaattaactcatgttagttattagttttgaaagtata |
41467192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 41703615 - 41703722
Alignment:
| Q |
1 |
aagcatgttctggaatcaccgcaaatcaatgttcatccatggcactgataacacaacaagaccgcaaatttgccaatgcagttgacagagtcaaaagaaa |
100 |
Q |
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||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
41703615 |
aagcatgttctggaatcaccgcaaatccatgttcatcagtggcactggcaacacaacaagaaagcaaattttccaatgcagttgacagagtcaaaagaaa |
41703714 |
T |
|
| Q |
101 |
attttctt |
108 |
Q |
| |
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|| ||||| |
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|
| T |
41703715 |
atcttctt |
41703722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 69 - 141
Target Start/End: Complemental strand, 41506955 - 41506883
Alignment:
| Q |
69 |
tttgccaatgcagttgacagagtcaaaagaaaattttcttccagcatctgtgaaacctccacttctacttctt |
141 |
Q |
| |
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||||| ||||||||||||| ||||||||||||||||||| |||| | ||||||||||||||||| |||||| |
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| T |
41506955 |
tttgcaaatgcagttgacacggtcaaaagaaaattttctttcagcgacagtgaaacctccacttcttcttctt |
41506883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 155
Target Start/End: Complemental strand, 41497706 - 41497620
Alignment:
| Q |
69 |
tttgccaatgcagttgacagagtcaaaagaaaattttcttccagcatctgtgaaacctccacttctacttctttcgatgattcattg |
155 |
Q |
| |
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||||| ||||| ||| ||| |||||||||||||||||||| |||| | ||||||||||||||||| |||| | |||||||||||| |
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| T |
41497706 |
tttgcaaatgcggttaacacagtcaaaagaaaattttctttcagcgacagtgaaacctccacttcttcttcctctgatgattcattg |
41497620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 81 - 155
Target Start/End: Complemental strand, 33078038 - 33077964
Alignment:
| Q |
81 |
gttgacagagtcaaaagaaaattttcttccagcatctgtgaaacctccacttctacttctttcgatgattcattg |
155 |
Q |
| |
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||||||| |||||||||||||| ||||| || | | ||||||||||||||||||| || | |||||||| |||| |
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| T |
33078038 |
gttgacacagtcaaaagaaaatattctttcaccgacagtgaaacctccacttctacgtcctccgatgatttattg |
33077964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 41513219 - 41513161
Alignment:
| Q |
50 |
aacacaacaagaccgcaaatttgccaatgcagttgacagagtcaaaagaaaattttctt |
108 |
Q |
| |
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|||||||||| | |||||||| ||||||||||||||| || |||||||||||||||| |
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|
| T |
41513219 |
aacacaacaaaaaagcaaatttcccaatgcagttgacactgttaaaagaaaattttctt |
41513161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 204 - 344
Target Start/End: Complemental strand, 36467243 - 36467105
Alignment:
| Q |
204 |
atgtaggcagacagtgcaggattattgaactattatccaaggtagatggactataacattatagtatccttgttagcta-agacgttttgttaggtttta |
302 |
Q |
| |
|
|||||||||| |||||||||||| |||||| |||| |||||| |||| ||||||||||||||||||||||||||| | || | ||||||||| ||||| |
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| T |
36467243 |
atgtaggcaggcagtgcaggatt---gaactaatatctaaggtaaatgggctataacattatagtatccttgttagccatagcccttttgttagatttta |
36467147 |
T |
|
| Q |
303 |
atgaacaattaactcatgttagttcttagttttgaaactata |
344 |
Q |
| |
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||||||||||||||||| ||||||||||| ||||||| |||| |
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| T |
36467146 |
atgaacaattaactcattttagttcttagctttgaaagtata |
36467105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 476 - 524
Target Start/End: Original strand, 33826623 - 33826671
Alignment:
| Q |
476 |
tataattagagaatcattagatattgttagagtttgttaaaagtagtta |
524 |
Q |
| |
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||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
33826623 |
tataattagtgaattgatagatattgttagagtttgttaaaagtagtta |
33826671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 481 - 524
Target Start/End: Original strand, 10908947 - 10908990
Alignment:
| Q |
481 |
ttagagaatcattagatattgttagagtttgttaaaagtagtta |
524 |
Q |
| |
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||||||| | |||||||||||||||||||||||||| ||||||| |
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| T |
10908947 |
ttagagatttattagatattgttagagtttgttaaatgtagtta |
10908990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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