View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0743_high_49 (Length: 392)
Name: NF0743_high_49
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_high_49 |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 3e-79; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 16 - 169
Target Start/End: Complemental strand, 40848115 - 40847962
Alignment:
| Q |
16 |
atcacaaatacaagcacatcagacttgaagttttgaaggcctataaataaatgaaagaaaatagatagcgtgagtaatggatattaagacaccggttaat |
115 |
Q |
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| T |
40848115 |
atcacaaatacaagtacatcagacttgaagttttgaaggcctataaataaatgaaagaaaatagatagcgtgagtaatggatattaagacaccggttaat |
40848016 |
T |
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| Q |
116 |
gtttattttaattatattatttttacaaaaattggaagcaaacaacgtaatgtt |
169 |
Q |
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| T |
40848015 |
gtttattttaattatattatttttacaaaaattggaagcaaacaacgtaatgtt |
40847962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 203 - 366
Target Start/End: Complemental strand, 40847930 - 40847767
Alignment:
| Q |
203 |
ggggcatctttaactataattatgattatgaaaaggggcataaaatgtggtgaaaagtgtgagtgagacggatgcacatctatcaaaatagaagggaaca |
302 |
Q |
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| T |
40847930 |
ggggcatatgtaactataattatgattatgaaaaggggcataatatgtggtgaaaagtgtgagtgagacggatgcacatctatcataatagaagggaaca |
40847831 |
T |
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| Q |
303 |
aataatgtgagacatggtgaggaagaaacagaaacgtgtaacatatggccagagcaataactga |
366 |
Q |
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| T |
40847830 |
aataatgtgagacatggtgaggaagaaacagaaacgtgtaacatatggcaagagcaataactga |
40847767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 280
Target Start/End: Complemental strand, 40794272 - 40794219
Alignment:
| Q |
227 |
attatgaaaaggggcataaaatgtggtgaaaagtgtgagtgagacggatgcaca |
280 |
Q |
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| T |
40794272 |
attatgaaaagaggcatgcaaggtggtgaatagtgtgagtgagatggatgcaca |
40794219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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