View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0743_high_53 (Length: 374)

Name: NF0743_high_53
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0743_high_53
NF0743_high_53
[»] chr4 (5 HSPs)
chr4 (1-266)||(7763529-7763795)
chr4 (319-360)||(7783937-7783978)
chr4 (316-360)||(7763848-7763892)
chr4 (223-266)||(7783840-7783883)
chr4 (92-124)||(9619038-9619070)
[»] chr5 (3 HSPs)
chr5 (97-130)||(27159239-27159272)
chr5 (92-130)||(6817403-6817441)
chr5 (233-266)||(6633690-6633723)
[»] chr3 (6 HSPs)
chr3 (71-124)||(14171623-14171676)
chr3 (92-130)||(30500323-30500361)
chr3 (89-134)||(17649288-17649333)
chr3 (97-130)||(30500104-30500137)
chr3 (233-266)||(51660664-51660697)
chr3 (92-124)||(43572447-43572479)
[»] chr2 (3 HSPs)
chr2 (92-130)||(23854948-23854986)
chr2 (101-134)||(15106134-15106167)
chr2 (88-124)||(26236383-26236419)
[»] chr8 (1 HSPs)
chr8 (233-266)||(30942947-30942980)
[»] chr6 (3 HSPs)
chr6 (219-260)||(8064880-8064921)
chr6 (101-130)||(26385345-26385374)
chr6 (97-130)||(30618025-30618058)
[»] chr1 (3 HSPs)
chr1 (233-266)||(25507263-25507296)
chr1 (101-130)||(43539414-43539443)
chr1 (101-134)||(48072028-48072061)
[»] chr7 (1 HSPs)
chr7 (92-124)||(38880012-38880044)


Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 7763529 - 7763795
Alignment:
Q  1 aaattcttatcttaaatgatgcgatcattcatttttgggttaataccacttttagtctctccaat--gggcaaattcctattttaatttttggaaaacaa 98  Q
    |||||||||||||||||||||  |||||||||| |||||||||||||| |||||||| || ||||  |||||||||||||||||||||| ||||||||||    
T  7763529 aaattcttatcttaaatgatgtaatcattcattcttgggttaatacca-ttttagtccctgcaatatgggcaaattcctattttaatttctggaaaacaa 7763627  T
Q  99 aaatttagattttgtccctgtaattttatattattctagtttaattccctcacttaacttgcagaatctagccacatgtcatgtcatgttgactatgtca 198  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7763628 aaatttagattttgtccctgtaattttatattattccagtttaatcccctcacttaacttgcagaatctagccacatgtcatgtcatgttgactatgtca 7763727  T
Q  199 ttttaatattttttaatccactatgtcaataccgatagaaactcgatgaaaacttttataaaatgaca 266  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  7763728 ttttaatattttttaatccactatgtcaataccgatagaaactcaatgaaaacttttataaaatgaca 7763795  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 319 - 360
Target Start/End: Original strand, 7783937 - 7783978
Alignment:
Q  319 tatgttctactagattttttagagaatgataaagggtgcgtt 360  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  7783937 tatgttctactagattttttagagaatgataaagggtgcgtt 7783978  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 316 - 360
Target Start/End: Original strand, 7763848 - 7763892
Alignment:
Q  316 atgtatgttctactagattttttagagaatgataaagggtgcgtt 360  Q
    |||||||||| |||| |||||||||||||||||||||||||||||    
T  7763848 atgtatgttcgactatattttttagagaatgataaagggtgcgtt 7763892  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 266
Target Start/End: Original strand, 7783840 - 7783883
Alignment:
Q  223 gtcaataccgatagaaactcgatgaaaacttttataaaatgaca 266  Q
    ||||||||||| | ||||||||||||||||||||||||||||||    
T  7783840 gtcaataccgacacaaactcgatgaaaacttttataaaatgaca 7783883  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 124
Target Start/End: Original strand, 9619038 - 9619070
Alignment:
Q  92 aaaacaaaaatttagattttgtccctgtaattt 124  Q
    |||||||| ||||||||||||||||||||||||    
T  9619038 aaaacaaagatttagattttgtccctgtaattt 9619070  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 97 - 130
Target Start/End: Complemental strand, 27159272 - 27159239
Alignment:
Q  97 aaaaatttagattttgtccctgtaattttatatt 130  Q
    ||||||||||||||||||||||||||||||||||    
T  27159272 aaaaatttagattttgtccctgtaattttatatt 27159239  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 130
Target Start/End: Complemental strand, 6817441 - 6817403
Alignment:
Q  92 aaaacaaaaatttagattttgtccctgtaattttatatt 130  Q
    |||| |||||||||||||||||||||||||||| |||||    
T  6817441 aaaaaaaaaatttagattttgtccctgtaatttcatatt 6817403  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 266
Target Start/End: Complemental strand, 6633723 - 6633690
Alignment:
Q  233 atagaaactcgatgaaaacttttataaaatgaca 266  Q
    |||||||||| |||||||||||||||||||||||    
T  6633723 atagaaactcaatgaaaacttttataaaatgaca 6633690  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 14171623 - 14171676
Alignment:
Q  71 aattcctattttaatttttggaaaacaaaaatttagattttgtccctgtaattt 124  Q
    |||||| |||||||||| || |||| ||| ||||||||||||||||||||||||    
T  14171623 aattccgattttaatttctgtaaaaaaaagatttagattttgtccctgtaattt 14171676  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 130
Target Start/End: Complemental strand, 30500361 - 30500323
Alignment:
Q  92 aaaacaaaaatttagattttgtccctgtaattttatatt 130  Q
    |||| |||||||||||||||||||||||||||| |||||    
T  30500361 aaaaaaaaaatttagattttgtccctgtaatttcatatt 30500323  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 17649333 - 17649288
Alignment:
Q  89 tggaaaacaaaaatttagattttgtccctgtaattttatattattc 134  Q
    ||||||| ||| |||||||||||||||||||||||| | |||||||    
T  17649333 tggaaaaaaaagatttagattttgtccctgtaatttcagattattc 17649288  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 130
Target Start/End: Original strand, 30500104 - 30500137
Alignment:
Q  97 aaaaatttagattttgtccctgtaattttatatt 130  Q
    |||||||||||||||||||||||||||| |||||    
T  30500104 aaaaatttagattttgtccctgtaatttcatatt 30500137  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 266
Target Start/End: Original strand, 51660664 - 51660697
Alignment:
Q  233 atagaaactcgatgaaaacttttataaaatgaca 266  Q
    |||||||||| |||||||||||||||||||||||    
T  51660664 atagaaactcaatgaaaacttttataaaatgaca 51660697  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 124
Target Start/End: Original strand, 43572447 - 43572479
Alignment:
Q  92 aaaacaaaaatttagattttgtccctgtaattt 124  Q
    |||| ||||||||||||||||||||||||||||    
T  43572447 aaaagaaaaatttagattttgtccctgtaattt 43572479  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 130
Target Start/End: Complemental strand, 23854986 - 23854948
Alignment:
Q  92 aaaacaaaaatttagattttgtccctgtaattttatatt 130  Q
    |||| |||||||||||||||||| |||||||||||||||    
T  23854986 aaaaaaaaaatttagattttgtctctgtaattttatatt 23854948  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 134
Target Start/End: Original strand, 15106134 - 15106167
Alignment:
Q  101 atttagattttgtccctgtaattttatattattc 134  Q
    |||||||||||||||||||||||||| |||||||    
T  15106134 atttagattttgtccctgtaattttagattattc 15106167  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 124
Target Start/End: Complemental strand, 26236419 - 26236383
Alignment:
Q  88 ttggaaaacaaaaatttagattttgtccctgtaattt 124  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  26236419 ttggaaaaaaaagatttagattttgtccctgtaattt 26236383  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 266
Target Start/End: Complemental strand, 30942980 - 30942947
Alignment:
Q  233 atagaaactcgatgaaaacttttataaaatgaca 266  Q
    |||||||||| |||||||||||||||||||||||    
T  30942980 atagaaactcaatgaaaacttttataaaatgaca 30942947  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 260
Target Start/End: Complemental strand, 8064921 - 8064880
Alignment:
Q  219 ctatgtcaataccgatagaaactcgatgaaaacttttataaa 260  Q
    ||||||||||||  |||||||||| |||||||||||||||||    
T  8064921 ctatgtcaatactcatagaaactcaatgaaaacttttataaa 8064880  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 130
Target Start/End: Original strand, 26385345 - 26385374
Alignment:
Q  101 atttagattttgtccctgtaattttatatt 130  Q
    ||||||||||||||||||||||||||||||    
T  26385345 atttagattttgtccctgtaattttatatt 26385374  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 130
Target Start/End: Original strand, 30618025 - 30618058
Alignment:
Q  97 aaaaatttagattttgtccctgtaattttatatt 130  Q
    |||||||||||||||||||||||||||| |||||    
T  30618025 aaaaatttagattttgtccctgtaatttcatatt 30618058  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 266
Target Start/End: Complemental strand, 25507296 - 25507263
Alignment:
Q  233 atagaaactcgatgaaaacttttataaaatgaca 266  Q
    |||||||||| |||||||||||||||||||||||    
T  25507296 atagaaactcaatgaaaacttttataaaatgaca 25507263  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 130
Target Start/End: Original strand, 43539414 - 43539443
Alignment:
Q  101 atttagattttgtccctgtaattttatatt 130  Q
    ||||||||||||||||||||||||||||||    
T  43539414 atttagattttgtccctgtaattttatatt 43539443  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 134
Target Start/End: Original strand, 48072028 - 48072061
Alignment:
Q  101 atttagattttgtccctgtaattttatattattc 134  Q
    |||||||||||||||||||||||| |||||||||    
T  48072028 atttagattttgtccctgtaatttcatattattc 48072061  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 124
Target Start/End: Complemental strand, 38880044 - 38880012
Alignment:
Q  92 aaaacaaaaatttagattttgtccctgtaattt 124  Q
    |||| ||||||||||||||||||||||||||||    
T  38880044 aaaaaaaaaatttagattttgtccctgtaattt 38880012  T

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