View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0743_high_55 (Length: 371)
Name: NF0743_high_55
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_high_55 |
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Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 60 - 360
Target Start/End: Complemental strand, 781305 - 781005
Alignment:
| Q |
60 |
gcttaattaaacaatatagccaaacaaggtgttattagataacagatgttgtccacgaagttattcttgcatgtagcagctttagtttgatgaattacca |
159 |
Q |
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| T |
781305 |
gcttaattaaacaatatagccaaacaaggtgttattagataacagatattgtccacgaagttattcttgcatgtagcagctttagtttgatgaattacca |
781206 |
T |
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| Q |
160 |
attgaaagagacttcagtcatcgatgccaatgccactcccccaactataggtagaagagaagaaaccacccataaagtaggcatctgttcatttaggaat |
259 |
Q |
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| T |
781205 |
attgaaagagacttcagtcatcgatgccaatgccactcccccaactataggtagaagagaagaaaccacccataaagtaggcatctgttcatttaggaat |
781106 |
T |
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| Q |
260 |
caaaactgaatgtcagaaaaccaaaacatttagatatcggtcactttcccatttatgagcatcaataacaaccgagtcattttccactatacagccttca |
359 |
Q |
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| T |
781105 |
caaaactgaatgtcagaaaaccaaaacatttagatatcggtcactttcccatttatgagcatcaataacaaccgagtcattttccactatacagccttca |
781006 |
T |
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| Q |
360 |
t |
360 |
Q |
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| T |
781005 |
t |
781005 |
T |
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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 48767521 - 48767473
Alignment:
| Q |
6 |
accatggcacttcttctcatagtagctccaaccaatttgccggcaacag |
54 |
Q |
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| T |
48767521 |
accaaggcacttcttctcatagtagctccaaccaatttgccggccacag |
48767473 |
T |
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