View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0743_high_58 (Length: 362)

Name: NF0743_high_58
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0743_high_58
NF0743_high_58
[»] chr7 (2 HSPs)
chr7 (11-106)||(4903868-4903963)
chr7 (201-272)||(4903672-4903743)
[»] chr3 (1 HSPs)
chr3 (309-357)||(48767473-48767521)


Alignment Details
Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 4903963 - 4903868
Alignment:
Q  11 gatgaactccacaacattattggtaatttgttttcttttatttttagaggaagcattgaaattaggtatagtattctggtttaaactgttgtgtgc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4903963 gatgaactccacaacattattggtaatttgttttcttttatttttagaggaagcattgaaattaggtatagaattctggtttaaactgttgtgtgc 4903868  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 201 - 272
Target Start/End: Complemental strand, 4903743 - 4903672
Alignment:
Q  201 ttggtacattgaaaacgataaagcctagacatgatagtccctaaatgcccatattttcttcttcttaaaaga 272  Q
    ||||| || ||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||    
T  4903743 ttggtgcaatgaaaacgataaagcttagacatgatagtccctaaatgcccagattttctccttcttaaaaga 4903672  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 309 - 357
Target Start/End: Original strand, 48767473 - 48767521
Alignment:
Q  309 ctgttgccggcaaattggttggagctactatgagaagaagtgccatggt 357  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  48767473 ctgtggccggcaaattggttggagctactatgagaagaagtgccttggt 48767521  T

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