View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0743_high_69 (Length: 313)
Name: NF0743_high_69
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_high_69 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 30 - 306
Target Start/End: Complemental strand, 34626330 - 34626054
Alignment:
| Q |
30 |
actgtctcactctcaacctcaaagaattctagctacacacacaatgctagaatcctcacaggaatactcagaatcccttctaatgagtgatttgattaat |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
34626330 |
actgtctcactctcaacctcaaagaattctagctacacacacaatgctagaatcctcacatgactactcagaatcccttctaatgagtgatttgattaat |
34626231 |
T |
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| Q |
130 |
cactataatattggtggattagctttaacagaagcttcaagaatatttcttatgaataatccaacattggattttgatccattatactacaattcaagtt |
229 |
Q |
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| T |
34626230 |
cactataatattggtggattagctttaacagaagcttcaagaatatttcttatgaataatccaacattggattttgatccattatactacaattcaagtt |
34626131 |
T |
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| Q |
230 |
tgataaattattatcagccaagtctattacaatttgaacagaatcagtttggaaacaattcaagctatttcttctct |
306 |
Q |
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| T |
34626130 |
tgataaattattatcagccaagtctattacaatttgaacagaatcagtttggaaacaattcaagctatttcttctct |
34626054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 59 - 188
Target Start/End: Complemental strand, 39674724 - 39674595
Alignment:
| Q |
59 |
tagctacacacacaatgctagaatcctcacaggaatactcagaatcccttctaatgagtgatttgattaatcactataatattggtggattagctttaac |
158 |
Q |
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||||||||||||||||| ||||||||||||||||||| |||||| | ||| ||||| |||||||||| |||||||||||||| ||||||||||||| ||| |
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| T |
39674724 |
tagctacacacacaatgttagaatcctcacaggaatattcagaagcacttttaatgggtgatttgatcaatcactataatatcggtggattagcttgaac |
39674625 |
T |
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| Q |
159 |
agaagcttcaagaatatttcttatgaataa |
188 |
Q |
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| T |
39674624 |
agaagccccaagaaaatttctcgtgaataa |
39674595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 106 - 179
Target Start/End: Original strand, 19968424 - 19968497
Alignment:
| Q |
106 |
cttctaatgagtgatttgattaatcactataatattggtggattagctttaacagaagcttcaagaatatttct |
179 |
Q |
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| T |
19968424 |
cttctaatgagtgatttgaattatcactataatattggttgtatagttttaacaaaagcttcaagaaaatttct |
19968497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 272
Target Start/End: Original strand, 44667014 - 44667161
Alignment:
| Q |
119 |
atttgattaatcactataatattggtggattagctttaacagaagcttcaagaatatttcttatgaataatccaacattggattttgatccattatacta |
218 |
Q |
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| T |
44667014 |
atttgaattatcactatagtattggtggtttagctttaacggaggcttcaaggaaatttctcatgaataagtcatcattggatt------cattgtccta |
44667107 |
T |
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| Q |
219 |
caattcaagtttgataaattattatcagccaagtctattacaatttgaacagaa |
272 |
Q |
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| T |
44667108 |
caatttaagtgtgatctattattatcactcaagtctaagacaatttgaacagaa |
44667161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 107 - 188
Target Start/End: Complemental strand, 40037578 - 40037494
Alignment:
| Q |
107 |
ttctaatgagtgatttgattaatcactataatattggtggattagctttaac---agaagcttcaagaatatttcttatgaataa |
188 |
Q |
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| T |
40037578 |
ttctaatgagcgatttgaattatcactataatattggtggtttagctttaacaggaggagcttcaggaaaatctcttatgaataa |
40037494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 306
Target Start/End: Original strand, 51044955 - 51045006
Alignment:
| Q |
255 |
attacaatttgaacagaatcagtttggaaacaattcaagctatttcttctct |
306 |
Q |
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| T |
51044955 |
attacaatttgaactgaaccaatttggaaccaattcaagctatttcttctct |
51045006 |
T |
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