View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0743_high_71 (Length: 304)
Name: NF0743_high_71
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_high_71 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 2151663 - 2151439
Alignment:
| Q |
1 |
aaataaacaacgatgggttgatagcttagtcacaaatgaagcatcacggtttgaaaagtagtagaaattcacaaactatagacaagttcatgagtcaaca |
100 |
Q |
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| T |
2151663 |
aaataaacaacgatgggttgatagcttagtcacaaatgaagcatcacggtttgaaaagtagtagaaattcacaaactatagacaagttcatgagtcaaca |
2151564 |
T |
|
| Q |
101 |
atggcataacaatgttcaagttcaattaatacacaagataataaatcagtagggccaagtgactatgactaggcctttatttggatttgcgtt-ggtaga |
199 |
Q |
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| T |
2151563 |
aagggataacaatgttcaagttcaattaatagacaagataataaatcagtagggccaagtgactatgactaggcctttatttggatttgcgttgggtaga |
2151464 |
T |
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| Q |
200 |
aaatcgagtgtccaaatatagaata |
224 |
Q |
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||||| ||||||||||||||||||| |
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| T |
2151463 |
aaatctagtgtccaaatatagaata |
2151439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 214 - 297
Target Start/End: Original strand, 46213355 - 46213438
Alignment:
| Q |
214 |
aatatagaatatataatttgggtcttttgttcattcttaagtcctaattaatcatgtcaaccgatcaagtttcaccattctctg |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
46213355 |
aatatagaatatataatttgggtcttttgttcattcttaaggcctaattaatcatgtcaaccgatcaagtttcaccattctctg |
46213438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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