View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0743_high_78 (Length: 275)
Name: NF0743_high_78
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_high_78 |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 54 - 271
Target Start/End: Original strand, 376329 - 376539
Alignment:
| Q |
54 |
atagatttgttaaggatttcaatatgaggattgttgtaacgtccttaatcattcatttttctctaaagaga----gtatagtgcaaagaaagtctaataa |
149 |
Q |
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| T |
376329 |
atagatttgttaaggatttcaatatgaggattgttgtaacgtccttaatcattcatttttctctaaagagatagagtatagtgcaaagaaagtctaataa |
376428 |
T |
|
| Q |
150 |
agtcaatgttttatgtctacgtcttattacatcaataagagaaatacaatatggaaattagtttatcaaatattacatttgttgcttctttttgttgata |
249 |
Q |
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| T |
376429 |
agtcaatgttttatgtctatgtcttattacaacaataagagaaatacaatatggaaattagtttatcaaatattaca-----------tttttgttgata |
376517 |
T |
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| Q |
250 |
aaatgactaaattacatttgtc |
271 |
Q |
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|||||||||||||||||||||| |
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| T |
376518 |
aaatgactaaattacatttgtc |
376539 |
T |
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