View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0743_high_79 (Length: 275)
Name: NF0743_high_79
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_high_79 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 30 - 275
Target Start/End: Original strand, 7763262 - 7763507
Alignment:
| Q |
30 |
tgatcgtctctgaagacgttgattccatgacggagaagagagtgatagagatgatcggtgaaggagtagcgagttccgcctctgaaactcagaaatatgt |
129 |
Q |
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| T |
7763262 |
tgatcgtctctgaagacgttgattccatgacggagaagagagtgatagagatgatccgtgaaggagtagcgagttccgcctctgaaactcagaaatatgt |
7763361 |
T |
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| Q |
130 |
cgtgtgtgaaataatcattgtgattcgccattgatgatttttgtttggtttgtgtgaatggaagtgttgaaagcatttgcttttgaaaggtcagaagaac |
229 |
Q |
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| T |
7763362 |
cgtgtgtgaaataatcattgtgattcgccattgatgatttttgtttggtttgtgtgaatggaagtgttgaaagcatttgcttttgaaaggtcagaagaac |
7763461 |
T |
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| Q |
230 |
gcgggaattacaaagaaactgtctctagatgccaacgttatgaatt |
275 |
Q |
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| T |
7763462 |
gcgggaattacaaagaaactgtctctagatgccaacgttatgaatt |
7763507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 33 - 166
Target Start/End: Original strand, 7755809 - 7755942
Alignment:
| Q |
33 |
tcgtctctgaagacgttgattccatgacggagaagagagtgatagagatgatcggtgaaggagtagcgagttccgcctctgaaactcagaaatatgtcgt |
132 |
Q |
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| T |
7755809 |
tcgtctctgaaaacgttgattccttgacggagaagtgaacggtagagatgatcggtgaaagagtagcgtgttccgcctctgaaactcagaaaaacatcgt |
7755908 |
T |
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| Q |
133 |
gtgtgaaataatcattgtgattcgccattgatga |
166 |
Q |
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| T |
7755909 |
gagtgaaatcttcgtagtgatttgccattgatga |
7755942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 35 - 139
Target Start/End: Original strand, 7839938 - 7840042
Alignment:
| Q |
35 |
gtctctgaagacgttgattccatgacggagaagagagtgatagagatgatcggtgaaggagtagcgagttccgcctctgaaactcagaaatatgtcgtgt |
134 |
Q |
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| T |
7839938 |
gtctctgaagacgttgattccgtgacggagaagtgaacggtagagatgatcggtgaaggagtagcgagttctgcctctgaaactgaggaaaacgtcgtga |
7840037 |
T |
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| Q |
135 |
gtgaa |
139 |
Q |
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| T |
7840038 |
gtgaa |
7840042 |
T |
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