View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0743_high_8 (Length: 608)
Name: NF0743_high_8
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_high_8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 549; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 29 - 608
Target Start/End: Original strand, 39591897 - 39592477
Alignment:
| Q |
29 |
atggtaaacgaacaaaggagaagttgaactcgaagcaagatgaaacaaagtaagttatgctgctagtttggcactagacagtacaaaaataggatggtaa |
128 |
Q |
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| T |
39591897 |
atggtaaacgaacaaaggagaagttgaacttgaagcaagatgaaacaaagtaagttatgctgctagtttggcacttgacagtacaaaaataggttggtaa |
39591996 |
T |
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| Q |
129 |
agttaggaatgaccttgtagagttctttatagtagagttagataactgtatgactattatttttgaaaaaggtgggttccttcatagcgtcctgttgttg |
228 |
Q |
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| T |
39591997 |
agttaggaatgaccttgtagagttctttatagtagagttagataactgtatgactattatttttgaaaaaggtgggttccttcatagcgtcctgttgttg |
39592096 |
T |
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| Q |
229 |
ttgttatgtctcacatcactgcaccttttctgaggtaggttgttacaaaggcaagagactagtgagttcaactaaaaaaggtatatggatggtgatatga |
328 |
Q |
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| T |
39592097 |
ttgttatgtctcacatcactgcaccttttctgaggtaggttgttacaaaggcaagagactagtgagttcaactaaaaaaggtatatggatggtgatatga |
39592196 |
T |
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| Q |
329 |
aacagat-ggaaaagtaagtaacatgtgattggaaggtgagtttctctttaatcttggataaaacaagatctccatttttatagtattgtgagtgcttct |
427 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
39592197 |
aacagatgggaaaagtaagtaacatgtgattggaaggtgagtttctctttaatcttggataaaacaagatctctatttttatagtattgtgagtgcttct |
39592296 |
T |
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| Q |
428 |
gtacagctcattcgcatgaaagatcatttaatagtgcagtaatcaatttcaccaatctgctagcttaaaaatcataaaaacctcaaattatattgataca |
527 |
Q |
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| T |
39592297 |
gtacagctcattcgcatgaaagatcatttaatagtgcagtaatcaatttcaccaatctgctagcttaaaaatcataaaaacctcaaattatactgataca |
39592396 |
T |
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| Q |
528 |
cattaaagagtgaataatataaagggtttactataaaacttctcgttctattttttggtttgttaacaagcagtaatcaac |
608 |
Q |
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| T |
39592397 |
cattaaagagtgaataatataaagggtttactataaaacttctcgttctattttttggtttgttgacaagcagtaatcaac |
39592477 |
T |
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