View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0743_high_97 (Length: 236)
Name: NF0743_high_97
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_high_97 |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 39 - 236
Target Start/End: Complemental strand, 35876411 - 35876214
Alignment:
| Q |
39 |
aaaatgaacaattgcaaatcataccttgcaagtgccatttttagctaaataaggatagttagcttcggtatcaatcccaccattttcaataacataacca |
138 |
Q |
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| T |
35876411 |
aaaatgaacaattgcaaatcataccttgcaagtaccatttttagctaaataaggatagttagcttctgtatcaatcccaccattttcaataacataacca |
35876312 |
T |
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| Q |
139 |
aatgcattaaagtaaaaacctccagcacaacccttgctagcagggtcacagtccacaagttcttgtgcagataggttgataagatttcccgtgactat |
236 |
Q |
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| T |
35876311 |
aatgcattaaagtaaaaacctccagcacaacccttgctagcagggtcacagtccacaagttcttgtgcagataggttgataagatttcccgtgactat |
35876214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 39 - 236
Target Start/End: Complemental strand, 24450612 - 24450415
Alignment:
| Q |
39 |
aaaatgaacaattgcaaatcataccttgcaagtgccatttttagctaaataaggatagttagcttcggtatcaatcccaccattttcaataacataacca |
138 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
24450612 |
aaaatgaacaattgcaaatcataccttgcaagtaccatttttagctaaataaggatagttagcttctgtatcaatcccaccattttcaataacataacca |
24450513 |
T |
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| Q |
139 |
aatgcattaaagtaaaaacctccagcacaacccttgctagcagggtcacagtccacaagttcttgtgcagataggttgataagatttcccgtgactat |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24450512 |
aatgcattaaagtaaaaacctccagcacaacccttgctagcagggtcacagtccacaagttcttgtgcagataggttgataagatttcccgtgactat |
24450415 |
T |
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