View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0743_low_1 (Length: 949)
Name: NF0743_low_1
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_low_1 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] scaffold0117 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 768; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 768; E-Value: 0
Query Start/End: Original strand, 50 - 949
Target Start/End: Original strand, 5979125 - 5980025
Alignment:
| Q |
50 |
ccaacaatattgaagttattgataagaatatcattgatttttcttattcctctcaggtttcttcttcgtttggaaagtcttgtgtttcttcgtgctcgtt |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5979125 |
ccaacaatattgaagttattgataagaatatcattgatttttcttattcctctcaggtttcttcttcgtttggaaagtcttgtgtttcttcgtgctcgtt |
5979224 |
T |
|
| Q |
150 |
gaagagaaagtgtagctctgataattttggcaatggaaagtgtggtagttcttctagccaatgtcattgttcaaagaagaggtatatatatgtagctctc |
249 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5979225 |
gaagagaaagtgtggctctgataattttggcaatggaaagtgtggtagttcatctagccaatgtcattgttcaaagaagaggtatatatatgtagctctc |
5979324 |
T |
|
| Q |
250 |
aaaattcgnnnnnnnnnnnnccttcttctttttgagttaattactttatgttaatttgttgttaattaatgtagaaaaatgaggttgaaaagagtggtga |
349 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5979325 |
aaaattcgtttttttttt---cttcttctttttgagttaattactttatgttaatttgttgttaattaatgtagaaaaatgaggttgaaaagagtggtga |
5979421 |
T |
|
| Q |
350 |
gggtagctgcaataagtttgaagatggctgatattccaacagatgaatattcttggaggaagtatggtcagaaacctattaaaggatcacctcatccaag |
449 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5979422 |
gggtagctgcaataagtttgaagatggctgatattccaacagatgaatattcttggaggaagtatggtcagaaacctattaaaggatcacctcatccaag |
5979521 |
T |
|
| Q |
450 |
gtacttgattataagcaagcaaccttatattaaaaattttaattgagttctcgtctgaatctatcacttactataaggaccaacaatttattatatgtgc |
549 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5979522 |
gtacttgattataagcaagcaaccttatattaaaaattttaattgagttctcatctgaatctatcacttactataaggaccaacaatttattatatgtgc |
5979621 |
T |
|
| Q |
550 |
tacactagattgctcattgacccttcaattttaaaaaagaactcgtgtatagagtgaatg---aaaagnnnnnnnnnncaattttgatcatttccctttt |
646 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
5979622 |
tacactagattgctcattgacccttcaattttaaaaatgaactcatgtatagagtgaatgaaaaaaaaaaaaaaaaaacaattttgatcatttccctttt |
5979721 |
T |
|
| Q |
647 |
tctttatgcacatagggatcatcttgattagtaatttacctttaacatatagtattcgaaaattgtttaaacttaaaccacaatagacattttcttcgag |
746 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5979722 |
tctttatgcacatagggatcatcttgattagtaatttacctttaacatatagtattcgaaaattgtttaaacttaaaccacaatagacattttcttcgag |
5979821 |
T |
|
| Q |
747 |
aaatagaagttcacgaccgtcc-ttatactaacgacggactcaatgacttgattgatgcaagtttggctaaaacaagagaaatgaatgaatatatgtacc |
845 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5979822 |
aaatagaagttcacgaccgtcctttatactaacgacggactcaatgacatgattgatgcaagtttgtctaaaacaagagaaatgaatgaatatatgtacc |
5979921 |
T |
|
| Q |
846 |
ttaaaatttaagtaatttatttttattattttggtcgaaccgacaccaattaggtcactgtctcggccgtaagaatgctaaagaccataaacttctaccg |
945 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5979922 |
ttaaaatttaagtaatttatttttattattttggtcgaaccgacaccaattaggtcaccgtctcggccgtaaaaatgctaaagaccataaacttctaccg |
5980021 |
T |
|
| Q |
946 |
ttaa |
949 |
Q |
| |
|
|||| |
|
|
| T |
5980022 |
ttaa |
5980025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 1e-34; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 320 - 455
Target Start/End: Complemental strand, 39255887 - 39255752
Alignment:
| Q |
320 |
gtagaaaaatgaggttgaaaagagtggtgagggtagctgcaataagtttgaagatggctgatattccaacagatgaatattcttggaggaagtatggtca |
419 |
Q |
| |
|
|||| |||||||| ||||| ||||| || |||| ||||||| || ||||||||||||||||||||| ||||||| ||||||||||| || |||||||| |
|
|
| T |
39255887 |
gtaggaaaatgagattgaagagagttgttcgggttcctgcaattagcttgaagatggctgatattccaccagatgattattcttggagaaaatatggtca |
39255788 |
T |
|
| Q |
420 |
gaaacctattaaaggatcacctcatccaaggtactt |
455 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39255787 |
gaaacctattaaaggttcacctcatccaaggtactt |
39255752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 234
Target Start/End: Complemental strand, 39256104 - 39256018
Alignment:
| Q |
148 |
ttgaagagaaagtgtagctctgataattttggcaatggaaagtgtggtagttcttctagccaatgtcattgttcaaagaagaggtat |
234 |
Q |
| |
|
||||| || |||||||||||||| | ||| || |||||||||||||||||||||||||| ||||||||||| || || |||||| |
|
|
| T |
39256104 |
ttgaaaaggaagtgtagctctgaaactttgggttctggaaagtgtggtagttcttctagccgttgtcattgttccaaaaaaaggtat |
39256018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 376 - 441
Target Start/End: Complemental strand, 52695489 - 52695424
Alignment:
| Q |
376 |
gctgatattccaacagatgaatattcttggaggaagtatggtcagaaacctattaaaggatcacct |
441 |
Q |
| |
|
|||||||| ||| |||| |||| ||| |||||||| || ||||| |||||||||||||| |||||| |
|
|
| T |
52695489 |
gctgatataccatcagacgaattttcgtggaggaaatacggtcaaaaacctattaaaggttcacct |
52695424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0117 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0117
Description:
Target: scaffold0117; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 376 - 451
Target Start/End: Complemental strand, 15248 - 15173
Alignment:
| Q |
376 |
gctgatattccaacagatgaatattcttggaggaagtatggtcagaaacctattaaaggatcacctcatccaaggt |
451 |
Q |
| |
|
|||||||| ||| ||||||| ||||| ||||||||||||||| ||||| ||||| ||| |||| |||||||||| |
|
|
| T |
15248 |
gctgatataccagcagatgagtattcatggaggaagtatggttccaaaccaattaagggaacaccacatccaaggt |
15173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 376 - 451
Target Start/End: Complemental strand, 50355436 - 50355361
Alignment:
| Q |
376 |
gctgatattccaacagatgaatattcttggaggaagtatggtcagaaacctattaaaggatcacctcatccaaggt |
451 |
Q |
| |
|
|||||||| ||| ||||||| ||||| ||||||||||||||| ||||| ||||| ||| |||| |||||||||| |
|
|
| T |
50355436 |
gctgatataccagcagatgagtattcatggaggaagtatggttccaaaccgattaagggaacaccacatccaaggt |
50355361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 401 - 452
Target Start/End: Complemental strand, 12166366 - 12166315
Alignment:
| Q |
401 |
cttggaggaagtatggtcagaaacctattaaaggatcacctcatccaaggta |
452 |
Q |
| |
|
||||||| || ||||||||||| ||||||||||| |||||| |||||||||| |
|
|
| T |
12166366 |
cttggagaaaatatggtcagaagcctattaaaggttcaccttatccaaggta |
12166315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University