View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0743_low_10 (Length: 574)
Name: NF0743_low_10
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 49 - 549
Target Start/End: Complemental strand, 53090645 - 53090149
Alignment:
| Q |
49 |
caaagaggctgttacattattcggtgataaagttttagctggagagctctatgcaactgcaaccaaactcaaacaccaggttctatacaccatcacatca |
148 |
Q |
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| T |
53090645 |
caaagaggctgttacattattcggtgataaagttttagctggagagctctatgcaactgcaaccaaactcaaacaccaggttctatacaccatcacatca |
53090546 |
T |
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| Q |
149 |
ctcaattttattagaatatcaaaatggttaattacttgaattatttaaatcaccaataaggaattcttggacattttaattgaaggtccatccatcaata |
248 |
Q |
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| T |
53090545 |
ctcaattttattagaatatcaaaatggttaattacttgaattatttaaatcaccaataaggaattcttggacattttaattgaaggtccatccatcaata |
53090446 |
T |
|
| Q |
249 |
agattctcctatcctatgannnnnnnnngaaacagggtacaaactacaagtgcagattgtcatcaattttgcagagtgtgtcatgtgcttgcttgtattt |
348 |
Q |
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| T |
53090445 |
agattctcctatcctatgttttttttttgaaacagggtacaaactacaagtgcagattgtcatcaa-tttgcagagtgtgtcatgtgcttgcttgtattt |
53090347 |
T |
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| Q |
349 |
gtgtcttttgctttcttcaccgtctaattgaataaaggaagtgaagggnnnnnnnnnnttctgcttttaatttttacttttgtctgtgcacaatatataa |
448 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
53090346 |
gtgtcttttgctttcttcaccgtctaattgaataaaggaagtgaag---aaaaaaaaattctgcttttaatttttacttttgtctgtgcactatatataa |
53090250 |
T |
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| Q |
449 |
gtaaattcatttgtgttttcaatatagcgtgacaagagaaatgctagcaacacacattgttggaaaatgtatgttagaatgtgtgttgataacatttctc |
548 |
Q |
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| T |
53090249 |
gtaaattcatttgtgctttcaatatagtgtgacaagagaaatgctagcaacacacattattgaaaagtatatgttagaacgtgtgttgataacatttctc |
53090150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 48767521 - 48767478
Alignment:
| Q |
6 |
accatggcacttcttctcatagtagctccaaccaatttgccggc |
49 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
48767521 |
accaaggcacttcttctcatagtagctccaaccaatttgccggc |
48767478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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