View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0743_low_109 (Length: 260)

Name: NF0743_low_109
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0743_low_109
NF0743_low_109
[»] chr3 (25 HSPs)
chr3 (140-228)||(39583336-39583424)
chr3 (153-228)||(38145981-38146056)
chr3 (139-245)||(13582421-13582528)
chr3 (139-249)||(26856847-26856958)
chr3 (152-250)||(53785633-53785732)
chr3 (140-228)||(26772670-26772758)
chr3 (140-228)||(32546707-32546795)
chr3 (140-228)||(44198679-44198767)
chr3 (137-228)||(52411998-52412089)
chr3 (154-228)||(42205993-42206067)
chr3 (131-204)||(4669794-4669867)
chr3 (140-250)||(37133083-37133194)
chr3 (152-249)||(3443397-3443495)
chr3 (160-243)||(4763884-4763967)
chr3 (141-228)||(46940880-46940967)
chr3 (141-250)||(7502096-7502204)
chr3 (137-226)||(25094681-25094770)
chr3 (152-213)||(38671002-38671063)
chr3 (173-228)||(44781-44836)
chr3 (137-191)||(7257700-7257754)
chr3 (155-229)||(25190040-25190114)
chr3 (142-247)||(25324943-25325049)
chr3 (141-186)||(465030-465075)
chr3 (141-190)||(26276528-26276577)
chr3 (137-226)||(38978908-38978997)
[»] chr8 (20 HSPs)
chr8 (131-228)||(38815197-38815294)
chr8 (142-250)||(3821138-3821247)
chr8 (140-228)||(39434579-39434667)
chr8 (140-223)||(3187882-3187965)
chr8 (140-236)||(22589434-22589531)
chr8 (154-226)||(25021923-25021995)
chr8 (140-221)||(42659139-42659220)
chr8 (140-188)||(24320249-24320297)
chr8 (137-184)||(500151-500198)
chr8 (165-228)||(6592513-6592575)
chr8 (167-226)||(24124967-24125026)
chr8 (159-213)||(24451051-24451105)
chr8 (152-205)||(8882268-8882321)
chr8 (153-249)||(9259377-9259474)
chr8 (154-226)||(8540489-8540561)
chr8 (166-228)||(43823927-43823989)
chr8 (137-226)||(4699780-4699868)
chr8 (139-180)||(8619733-8619774)
chr8 (140-224)||(18804525-18804608)
chr8 (152-228)||(37514145-37514221)
[»] chr6 (10 HSPs)
chr6 (140-229)||(32115630-32115719)
chr6 (137-220)||(3137362-3137445)
chr6 (153-226)||(959506-959579)
chr6 (140-228)||(17249412-17249500)
chr6 (143-225)||(29338189-29338271)
chr6 (141-226)||(28625844-28625928)
chr6 (152-211)||(357840-357899)
chr6 (142-228)||(24016251-24016337)
chr6 (140-228)||(34304408-34304496)
chr6 (152-222)||(33220824-33220894)
[»] chr7 (28 HSPs)
chr7 (140-239)||(21326933-21327033)
chr7 (141-228)||(48539094-48539181)
chr7 (142-228)||(41117877-41117963)
chr7 (142-250)||(43856788-43856897)
chr7 (160-250)||(4501191-4501282)
chr7 (152-250)||(27521395-27521494)
chr7 (170-250)||(19277235-19277316)
chr7 (152-225)||(23037469-23037542)
chr7 (141-226)||(30216167-30216252)
chr7 (132-250)||(22197891-22198009)
chr7 (132-250)||(22239812-22239930)
chr7 (153-228)||(24527514-24527589)
chr7 (141-250)||(5972300-5972410)
chr7 (154-228)||(25187038-25187112)
chr7 (142-228)||(28517394-28517480)
chr7 (140-222)||(45003010-45003092)
chr7 (142-250)||(40726564-40726673)
chr7 (149-217)||(36558985-36559053)
chr7 (152-228)||(45613949-45614025)
chr7 (152-250)||(5825197-5825296)
chr7 (141-204)||(27027761-27027824)
chr7 (140-194)||(2904292-2904346)
chr7 (131-224)||(43333941-43334034)
chr7 (140-228)||(982861-982949)
chr7 (157-228)||(10905047-10905118)
chr7 (142-216)||(34772696-34772770)
chr7 (141-195)||(42295324-42295378)
chr7 (167-195)||(45974739-45974767)
[»] chr4 (29 HSPs)
chr4 (142-250)||(4419177-4419286)
chr4 (140-228)||(3329908-3329996)
chr4 (141-227)||(23242813-23242899)
chr4 (155-228)||(16955387-16955460)
chr4 (92-226)||(8738069-8738203)
chr4 (140-249)||(25504207-25504317)
chr4 (141-222)||(50001039-50001120)
chr4 (140-228)||(53170424-53170513)
chr4 (159-223)||(18981651-18981714)
chr4 (137-220)||(23233229-23233312)
chr4 (142-244)||(55933550-55933653)
chr4 (152-213)||(48657037-48657098)
chr4 (152-228)||(23255637-23255713)
chr4 (140-228)||(30940839-30940927)
chr4 (142-250)||(600776-600885)
chr4 (140-221)||(53619498-53619579)
chr4 (160-228)||(38535676-38535744)
chr4 (140-228)||(39001309-39001397)
chr4 (153-226)||(49344248-49344325)
chr4 (140-204)||(50442610-50442674)
chr4 (154-189)||(1041351-1041386)
chr4 (131-226)||(26521392-26521486)
chr4 (153-228)||(34107803-34107878)
chr4 (141-228)||(50464403-50464490)
chr4 (152-250)||(56462190-56462289)
chr4 (85-119)||(214961-214995)
chr4 (170-238)||(6865916-6865984)
chr4 (141-226)||(45661604-45661689)
chr4 (167-250)||(132324-132408)
[»] chr1 (17 HSPs)
chr1 (140-252)||(22346807-22346920)
chr1 (142-250)||(34644480-34644589)
chr1 (131-250)||(2898605-2898725)
chr1 (152-228)||(24177618-24177694)
chr1 (131-228)||(31737430-31737526)
chr1 (152-221)||(40515989-40516057)
chr1 (131-250)||(2764382-2764502)
chr1 (140-228)||(21472915-21473003)
chr1 (142-228)||(6670212-6670298)
chr1 (140-195)||(4611101-4611156)
chr1 (154-244)||(4862079-4862170)
chr1 (168-250)||(20259881-20259964)
chr1 (139-194)||(30688468-30688523)
chr1 (165-228)||(38731546-38731609)
chr1 (141-183)||(45835338-45835380)
chr1 (140-213)||(47459594-47459667)
chr1 (140-228)||(28041234-28041322)
[»] chr5 (15 HSPs)
chr5 (126-232)||(15292128-15292234)
chr5 (140-228)||(2566202-2566290)
chr5 (142-226)||(32269906-32269990)
chr5 (140-222)||(430514-430596)
chr5 (141-250)||(13166994-13167104)
chr5 (139-224)||(23023506-23023591)
chr5 (139-250)||(37873722-37873834)
chr5 (165-228)||(22188762-22188825)
chr5 (152-229)||(16017097-16017174)
chr5 (160-228)||(19260236-19260304)
chr5 (152-228)||(35310372-35310448)
chr5 (149-183)||(43349981-43350015)
chr5 (152-217)||(15809973-15810038)
chr5 (159-228)||(25663139-25663208)
chr5 (159-228)||(38875570-38875638)
[»] chr2 (14 HSPs)
chr2 (140-228)||(17344550-17344638)
chr2 (140-250)||(4413150-4413261)
chr2 (139-252)||(13413262-13413376)
chr2 (149-190)||(26407839-26407880)
chr2 (140-228)||(9685522-9685610)
chr2 (152-228)||(41868015-41868091)
chr2 (140-222)||(27502274-27502356)
chr2 (131-250)||(7760929-7761049)
chr2 (152-250)||(16351928-16352027)
chr2 (160-250)||(44686348-44686439)
chr2 (153-238)||(19161879-19161965)
chr2 (140-228)||(18745061-18745149)
chr2 (131-227)||(3825629-3825725)
chr2 (142-250)||(8036566-8036677)
[»] scaffold0148 (1 HSPs)
scaffold0148 (132-250)||(33154-33273)
[»] scaffold0009 (1 HSPs)
scaffold0009 (140-223)||(103018-103101)
[»] scaffold0490 (1 HSPs)
scaffold0490 (173-228)||(6279-6334)
[»] scaffold0361 (1 HSPs)
scaffold0361 (144-224)||(17390-17468)
[»] scaffold1768 (1 HSPs)
scaffold1768 (137-226)||(293-382)


Alignment Details
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 140 - 228
Target Start/End: Complemental strand, 39583424 - 39583336
Alignment:
Q  140 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    |||||||| || |||||||||||| |||||||||| |||||||||||||||||||| || ||||| |||||||||||||||||||||||    
T  39583424 cctttttggatggcaaaatcaatcctcgtaaacacgacattcatgaacctaggagacatgacattgctatgcatgaccctttgaactct 39583336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 153 - 228
Target Start/End: Original strand, 38145981 - 38146056
Alignment:
Q  153 caaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    ||||||||||||||||||||||||| |||||| |||||||||| || |||||  ||||||||||||||||||||||    
T  38145981 caaaatcaatcatcgtaaacacaacgttcatggacctaggagacatgacattgttatgcatgaccctttgaactct 38146056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 245
Target Start/End: Original strand, 13582421 - 13582528
Alignment:
Q  139 gcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaagg 237  Q
    ||||||||| || || ||||||||| ||||||||||||||||||||  ||||||||| || |||||  ||||||||||| |||||||||| |||| ||||    
T  13582421 gcctttttggatggctaaatcaatcttcgtaaacacaacattcatggtcctaggagacatgacattgttatgcatgaccttttgaactctctgtagaagg 13582520  T
Q  238 tccacaat 245  Q
    || |||||    
T  13582521 tcaacaat 13582528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 249
Target Start/End: Complemental strand, 26856958 - 26856847
Alignment:
Q  139 gcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaagg 237  Q
    ||||||||| || | |||| ||||| ||| || |||||||||||| ||||||||||| || ||||| ||||||||||||||||||||||| |||| ||||    
T  26856958 gcctttttggatggtaaaaccaatcctcgcaagcacaacattcataaacctaggagacatgacattgctatgcatgaccctttgaactctatgtagaagg 26856859  T
Q  238 tccacaatctct 249  Q
    || ||| |||||    
T  26856858 tcaacagtctct 26856847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 250
Target Start/End: Original strand, 53785633 - 53785732
Alignment:
Q  152 gcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctg 250  Q
    |||||| ||||| ||||||||| |||||||||| |||||||||| || ||||| |||||||||||| |||||||||| |||| |||||| |||| |||||    
T  53785633 gcaaaaccaatcctcgtaaacataacattcatggacctaggagacatgacattgctatgcatgaccttttgaactctatgtagaaggtcaacaacctctg 53785732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 228
Target Start/End: Original strand, 26772670 - 26772758
Alignment:
Q  140 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    |||||||| || |||||||||||| |||||||||||||||||||| |||||||||| || |||||  ||||||| | |||||| |||||    
T  26772670 cctttttggatggcaaaatcaatcctcgtaaacacaacattcatggacctaggagacataacattgttatgcataatcctttgtactct 26772758  T

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Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 228
Target Start/End: Original strand, 32546707 - 32546795
Alignment:
Q  140 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    |||||||| || |||||| ||||| |||| ||||||||||||||| |||||||||| || ||||| |||||||||||  ||||||||||    
T  32546707 cctttttggatggcaaaaccaatcctcgtgaacacaacattcatggacctaggagacatgacattactatgcatgactttttgaactct 32546795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 228
Target Start/End: Original strand, 44198679 - 44198767
Alignment:
Q  140 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    |||||||| || ||||||||||| |||| |||||||||||||||| |||||||||| || ||||| |||||||| ||| | ||||||||    
T  44198679 cctttttggatggcaaaatcaattatcgcaaacacaacattcatggacctaggagacatgacattgctatgcataaccttctgaactct 44198767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 228
Target Start/End: Complemental strand, 52412089 - 52411998
Alignment:
Q  137 aagcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    ||||||||||| || |||||||||||||| |||||||||| ||| |||   |||||||| || |||||  ||||||||||||||||||||||    
T  52412089 aagcctttttggatggcaaaatcaatcattgtaaacacaatatttatgggtctaggagacatgacattgttatgcatgaccctttgaactct 52411998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 42205993 - 42206067
Alignment:
Q  154 aaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    |||||||||||||||||||||||| || ||| | |||||| | ||||||||||||||||||||| ||| ||||||    
T  42205993 aaaatcaatcatcgtaaacacaacgtttatggatctaggatacattacatttctatgcatgaccatttaaactct 42206067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 4669867 - 4669794
Alignment:
Q  131 gccgcgaagcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatt 204  Q
    ||||| || |||||||| ||| |||||||||||||||||||||||||||||||| ||| |||||| || |||||    
T  4669867 gccgccaaacctttttggataacaaaatcaatcatcgtaaacacaacattcatggaccaaggagacatgacatt 4669794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 250
Target Start/End: Complemental strand, 37133194 - 37133083
Alignment:
Q  140 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggt 238  Q
    |||||||| || |||||| ||||| |  |||||||||||||||| ||| ||||||| || ||||| |||||||||||| || ||||||| |||| |||||    
T  37133194 cctttttggatcgcaaaaccaatccttataaacacaacattcattaacttaggagacatgacattgctatgcatgacctttagaactctatgtagaaggt 37133095  T
Q  239 ccacaatctctg 250  Q
    | |||| |||||    
T  37133094 caacaacctctg 37133083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 249
Target Start/End: Complemental strand, 3443495 - 3443397
Alignment:
Q  152 gcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctct 249  Q
    |||||| |||||||||||||||||||||||||  |  ||||||| |  ||||| ||| ||||||||||||||||||| |||| |||||| |||| ||||    
T  3443495 gcaaaaccaatcatcgtaaacacaacattcatagatttaggagacaagacattcctacgcatgaccctttgaactctatgtagaaggtcaacaacctct 3443397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 243
Target Start/End: Complemental strand, 4763967 - 4763884
Alignment:
Q  160 aatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccaca 243  Q
    |||| |||||||||||||||||||| ||| |||||| || ||||| |||||||| ||| |||||||||| |||| ||||||||||    
T  4763967 aatcctcgtaaacacaacattcatggacc-aggagacatgacattgctatgcataaccttttgaactctatgtagaaggtccaca 4763884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 46940967 - 46940880
Alignment:
Q  141 ctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    ||||||| ||| ||||||||||  |||||||||||||||||||||||||| |||  || |||||    ||||||| ||||||||||||    
T  46940967 ctttttggataacaaaatcaattttcgtaaacacaacattcatgaacctatgagtcatgacattgtcgtgcatgatcctttgaactct 46940880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 250
Target Start/End: Complemental strand, 7502204 - 7502096
Alignment:
Q  141 ctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactcttgtaaaaggtcc 240  Q
    ||||||| |||||||||||||| |||||||||| || ||||||| | ||| |||  || |||||  | ||||||||||||| ||||| |||| ||||||     
T  7502204 ctttttggatagcaaaatcaattatcgtaaacataatattcatggatctatgagtcatgacattgttgtgcatgaccctttaaactc-tgtagaaggtca 7502106  T
Q  241 acaatctctg 250  Q
    |||| |||||    
T  7502105 acaacctctg 7502096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 226
Target Start/End: Complemental strand, 25094770 - 25094681
Alignment:
Q  137 aagcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaact 226  Q
    ||||||||||  || ||||||  |||| |||| ||||||||||||||| || ||  ||| |||||||| |||||||||||| ||||||||    
T  25094770 aagcctttttagattgcaaaactaatcttcgtgaacacaacattcatggacttaaaagatattacattgctatgcatgaccatttgaact 25094681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 213
Target Start/End: Complemental strand, 38671063 - 38671002
Alignment:
Q  152 gcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcat 213  Q
    |||||| ||||| ||||| |||||||||||||| |||||||||| || ||||| ||||||||    
T  38671063 gcaaaaccaatcctcgtacacacaacattcatggacctaggagacataacattgctatgcat 38671002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 44781 - 44836
Alignment:
Q  173 acaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    |||||||||||| |||||||| | || ||||| |||||||||||| ||||||||||    
T  44781 acaacattcatggacctaggaaacatgacattgctatgcatgaccttttgaactct 44836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 7257754 - 7257700
Alignment:
Q  137 aagcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctag 191  Q
    ||||||||||||||  |||||  |||| |||||||||||||||||||| ||||||    
T  7257754 aagcctttttgaatgacaaaactaatcttcgtaaacacaacattcatggacctag 7257700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 25190114 - 25190040
Alignment:
Q  155 aaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactctt 229  Q
    ||||||||| || |||| |||||||||||  || |||| || | ||||||||||| |||||| ||||||||||||    
T  25190114 aaatcaatcctcttaaatacaacattcatatacttaggcgacactacatttctattcatgactctttgaactctt 25190040  T

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Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 247
Target Start/End: Original strand, 25324943 - 25325049
Alignment:
Q  142 tttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtcc 240  Q
    |||||| || |||||| |||||||||||| ||||| ||||||| |  ||||| |  | ||||| |||||||||| | |||||||||| |||| ||||||     
T  25324943 tttttggatggcaaaagcaatcatcgtaagcacaatattcatggatttaggaaacttgacattgctatgcatgatcatttgaactctatgtagaaggtca 25325042  T
Q  241 acaatct 247  Q
    |||||||    
T  25325043 acaatct 25325049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 465075 - 465030
Alignment:
Q  141 ctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaa 186  Q
    |||||||||| |||||||||||  | ||||||||||||||||||||    
T  465075 ctttttgaatggcaaaatcaatatttgtaaacacaacattcatgaa 465030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 190
Target Start/End: Original strand, 26276528 - 26276577
Alignment:
Q  141 ctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaaccta 190  Q
    ||||||| || |||||||||||| || ||||||||||||||||| |||||    
T  26276528 ctttttggatggcaaaatcaatcctcataaacacaacattcatggaccta 26276577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 226
Target Start/End: Complemental strand, 38978997 - 38978908
Alignment:
Q  137 aagcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaact 226  Q
    ||||||||||| || ||||||  |||  |||||||||||||||| || |||||| |||| || |||||  ||||||| ||| ||||||||    
T  38978997 aagcctttttggatggcaaaactaattttcgtaaacacaacattgataaacctatgagacatgacattgttatgcatcaccttttgaact 38978908  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 131 - 228
Target Start/End: Original strand, 38815197 - 38815294
Alignment:
Q  131 gccgcgaagcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    ||||| ||||||||||| || | |||| ||||| |||||||||||||||||||| |||||||||| || ||||| |||||||||||||||||||||||    
T  38815197 gccgctaagcctttttggatggaaaaaccaatcctcgtaaacacaacattcatggacctaggagacatgacattgctatgcatgaccctttgaactct 38815294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 142 - 250
Target Start/End: Original strand, 3821138 - 3821247
Alignment:
Q  142 tttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtcc 240  Q
    ||||| ||| |||| ||||||| ||||||||| |||||| |||||||||||||| || ||||| |||||||| |||||||||||||| |||| ||||||     
T  3821138 tttttaaattgcaatatcaatcctcgtaaacataacatttatgaacctaggagacatgacattgctatgcattaccctttgaactctatgtagaaggtca 3821237  T
Q  241 acaatctctg 250  Q
    |||| |||||    
T  3821238 acaacctctg 3821247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 228
Target Start/End: Original strand, 39434579 - 39434667
Alignment:
Q  140 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    |||||||| || |||||||||||| |||||||||||||||||||| | ||| |||| ||||||||  ||||||| |||||||| |||||    
T  39434579 cctttttggatggcaaaatcaatcctcgtaaacacaacattcatggatctaagagacattacattgatatgcataaccctttggactct 39434667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 3187882 - 3187965
Alignment:
Q  140 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttga 223  Q
    |||||||| || |||||| ||||  |||||||||||||||||||| |||||||||| || ||||| |||||||| |||||||||    
T  3187882 cctttttggatggcaaaaccaattctcgtaaacacaacattcatggacctaggagacataacattgctatgcataaccctttga 3187965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 236
Target Start/End: Complemental strand, 22589531 - 22589434
Alignment:
Q  140 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaag 236  Q
    |||||||| || |||||| ||||| |||| ||||||||||||||  ||||| |||| || ||||| |||||||||||| |||||||||| ||||||||    
T  22589531 cctttttggatggcaaaaccaatcctcgtgaacacaacattcatagacctatgagacatgacattgctatgcatgaccttttgaactctatgtaaaag 22589434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 226
Target Start/End: Complemental strand, 25021995 - 25021923
Alignment:
Q  154 aaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaact 226  Q
    |||||||||||| ||||||||||||||| || |||||||||| || |||||  | ||||||||||||||||||    
T  25021995 aaaatcaatcattgtaaacacaacattcctggacctaggagatatgacattgttgtgcatgaccctttgaact 25021923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 221
Target Start/End: Original strand, 42659139 - 42659220
Alignment:
Q  140 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgacccttt 221  Q
    |||||||| ||  |||||| |||| ||||||||||||||||||||||||||| ||| || | ||| |||||||| |||||||    
T  42659139 cctttttggatgacaaaattaatcctcgtaaacacaacattcatgaacctagaagacataatattgctatgcataacccttt 42659220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 24320249 - 24320297
Alignment:
Q  140 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacc 188  Q
    |||||||| ||| ||||||||||| ||||||||||||||||||||||||    
T  24320249 cctttttggatatcaaaatcaatcctcgtaaacacaacattcatgaacc 24320297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 184
Target Start/End: Original strand, 500151 - 500198
Alignment:
Q  137 aagcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatg 184  Q
    |||||||||||||| | |||||||||| ||||||||||||||||||||    
T  500151 aagcctttttgaatggtaaaatcaatcctcgtaaacacaacattcatg 500198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 228
Target Start/End: Original strand, 6592513 - 6592575
Alignment:
Q  165 tcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    |||||||||||||||||||||||||| |||| || ||| || ||||||||||| ||||||||||    
T  6592513 tcgtaaacacaacattcatgaacctatgagacatgaca-ttatatgcatgaccttttgaactct 6592575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 24124967 - 24125026
Alignment:
Q  167 gtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaact 226  Q
    |||||||||||||||||| ||||| |||| || ||||| |||||||||||| ||||||||    
T  24124967 gtaaacacaacattcatggacctatgagacatgacattgctatgcatgaccttttgaact 24125026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 24451051 - 24451105
Alignment:
Q  159 caatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcat 213  Q
    |||||||||| ||||||||||||||| |||||||||| || ||||| ||||||||    
T  24451051 caatcatcgtgaacacaacattcatggacctaggagacatgacattgctatgcat 24451105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 8882268 - 8882321
Alignment:
Q  152 gcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacattt 205  Q
    ||||||| |||| |||||||||||||||||||| |||||||||| || ||||||    
T  8882268 gcaaaattaatcctcgtaaacacaacattcatggacctaggagacatgacattt 8882321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 249
Target Start/End: Complemental strand, 9259474 - 9259377
Alignment:
Q  153 caaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctct 249  Q
    ||||||||||| ||||||| |||||||||||| || ||||| | || ||||| ||||||||||  || |||||||| |||| |||||| |||| ||||    
T  9259474 caaaatcaatcttcgtaaatacaacattcatggacttaggatatatgacattgctatgcatgagtctgtgaactctatgtagaaggtcaacaacctct 9259377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 226
Target Start/End: Complemental strand, 8540561 - 8540489
Alignment:
Q  154 aaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaact 226  Q
    ||||||||||||||||||||||||||| |||||  ||| | | || |||||  || |||||||||||||||||    
T  8540561 aaaatcaatcatcgtaaacacaacatttatgaaaatagaaaacatgacattgttaagcatgaccctttgaact 8540489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 228
Target Start/End: Original strand, 43823927 - 43823989
Alignment:
Q  166 cgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    ||||||||||||||| ||| | || ||||| || ||||| |||||||||||| ||||||||||    
T  43823927 cgtaaacacaacattaatggatctcggagacatgacattgctatgcatgaccatttgaactct 43823989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 226
Target Start/End: Original strand, 4699780 - 4699868
Alignment:
Q  137 aagcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaact 226  Q
    ||||||||||| || ||||||  |||| | |||||||||||||||||| ||||||| || || | ||| |||| ||||| ||||||||||    
T  4699780 aagcctttttggatggcaaaactaatccttgtaaacacaacattcatggacctaggtgacataatattgctattcatga-cctttgaact 4699868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 180
Target Start/End: Original strand, 8619733 - 8619774
Alignment:
Q  139 gcctttttgaatagcaaaatcaatcatcgtaaacacaacatt 180  Q
    |||||||||||  |||||||||||| ||||||||||||||||    
T  8619733 gcctttttgaaaggcaaaatcaatcgtcgtaaacacaacatt 8619774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 224
Target Start/End: Original strand, 18804525 - 18804608
Alignment:
Q  140 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaa 224  Q
    |||||||| || |||||| ||||| ||||||||| |||| || ||||||||||||  || |||||  ||||||||||| ||||||    
T  18804525 cctttttggatggcaaaaccaatcctcgtaaacaaaacactc-tgaacctaggagtcatgacattgttatgcatgaccttttgaa 18804608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 228
Target Start/End: Original strand, 37514145 - 37514221
Alignment:
Q  152 gcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    |||| ||||||| |||| || |||||||||||| ||||| ||||  | |||||  ||||||||||| ||||||||||    
T  37514145 gcaagatcaatcctcgtgaatacaacattcatggacctaagagacgtaacattgatatgcatgaccttttgaactct 37514221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 140 - 229
Target Start/End: Original strand, 32115630 - 32115719
Alignment:
Q  140 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactctt 229  Q
    |||||||  |||||||||||||||||||||||||||||||||||| |||||||||| || |||||  ||||||||||| |||||||||||    
T  32115630 cctttttagatagcaaaatcaatcatcgtaaacacaacattcatggacctaggagacatgacattgttatgcatgaccttttgaactctt 32115719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 137 - 220
Target Start/End: Complemental strand, 3137445 - 3137362
Alignment:
Q  137 aagcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctt 220  Q
    ||||||||||| || |||||| ||||| |||||||||||||||||||| |||||||||| || ||||| |||||||||||||||    
T  3137445 aagcctttttggatggcaaaaccaatcctcgtaaacacaacattcatggacctaggagacatgacattgctatgcatgaccctt 3137362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 153 - 226
Target Start/End: Original strand, 959506 - 959579
Alignment:
Q  153 caaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaact 226  Q
    ||||||||||| |||||||||||||||||||| |||||||||| |  ||||| |||||||||||| ||||||||    
T  959506 caaaatcaatcctcgtaaacacaacattcatggacctaggagacacaacattgctatgcatgaccttttgaact 959579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 228
Target Start/End: Complemental strand, 17249500 - 17249412
Alignment:
Q  140 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    |||||||| || |||||| ||||| ||||||||||||||||||||||| ||||||| || ||||| |||| ||| | |||||| |||||    
T  17249500 cctttttggatggcaaaaccaatcctcgtaaacacaacattcatgaacttaggagacataacattgctatacataatcctttggactct 17249412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 225
Target Start/End: Complemental strand, 29338271 - 29338189
Alignment:
Q  143 ttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaac 225  Q
    ||||| |||| |||||||||| | |||||||||||||||||| |||||||||  || |||||  | |||||||||||||||||    
T  29338271 ttttggatagaaaaatcaatccttgtaaacacaacattcatggacctaggagtcatgacattgatgtgcatgaccctttgaac 29338189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 226
Target Start/End: Original strand, 28625844 - 28625928
Alignment:
Q  141 ctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaact 226  Q
    |||||||||| ||||||||||||  ||||||||||||||||||  ||||| |||| || |||| | ||||||||||| ||||||||    
T  28625844 ctttttgaatggcaaaatcaatctccgtaaacacaacattcatagacctatgagatatgacatgt-tatgcatgaccttttgaact 28625928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 357899 - 357840
Alignment:
Q  152 gcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgc 211  Q
    ||||||| |||| |||||||||||||||||||| |||||||||| || ||||| ||||||    
T  357899 gcaaaattaatcttcgtaaacacaacattcatggacctaggagagataacattgctatgc 357840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 228
Target Start/End: Original strand, 24016251 - 24016337
Alignment:
Q  142 tttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    ||||| |||||||||| |||| |||||||||| || ||| ||| || ||||||| || |||||  | ||||||||||||||||||||    
T  24016251 ttttttaatagcaaaaccaattatcgtaaacataatatttatgtacttaggagacatgacattcttgtgcatgaccctttgaactct 24016337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 228
Target Start/End: Original strand, 34304408 - 34304496
Alignment:
Q  140 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    |||||||| || |||||||||||| ||||||| |||||||||||  ||||| |||| || | ||| |||||||| || ||||| |||||    
T  34304408 cctttttggattgcaaaatcaatcctcgtaaatacaacattcatagacctatgagacatgatattgctatgcataactctttggactct 34304496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 33220894 - 33220824
Alignment:
Q  152 gcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttg 222  Q
    |||||| |||| ||||||||| ||||||||||| |||||| ||| |  ||||| |||||||| ||||||||    
T  33220894 gcaaaaccaattatcgtaaacgcaacattcatggacctagaagacacaacattgctatgcataaccctttg 33220824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 140 - 239
Target Start/End: Complemental strand, 21327033 - 21326933
Alignment:
Q  140 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggt 238  Q
    |||||||| || |||||||||||| |||| ||||||||||||||| |||||||||| || ||||| |||||||||||| |||||||||| ||||||||||    
T  21327033 cctttttggatggcaaaatcaatcctcgtgaacacaacattcatggacctaggagacataacattgctatgcatgaccttttgaactctatgtaaaaggt 21326934  T
Q  239 c 239  Q
    |    
T  21326933 c 21326933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 48539094 - 48539181
Alignment:
Q  141 ctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    ||||||| || |||||| ||||| |||||||||||||||||||| |||||||||| || ||||| |||||||||||| |||| |||||    
T  48539094 ctttttggatggcaaaaccaatcctcgtaaacacaacattcatggacctaggagacatgacattgctatgcatgaccttttggactct 48539181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 41117963 - 41117877
Alignment:
Q  142 tttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    |||||| |||||||||||||||||||| ||||||||||||||| |||||||| | || ||||| |||||||||| | ||| ||||||    
T  41117963 tttttggatagcaaaatcaatcatcgtgaacacaacattcatggacctaggaaacatgacattgctatgcatgatcttttaaactct 41117877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 142 - 250
Target Start/End: Original strand, 43856788 - 43856897
Alignment:
Q  142 tttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtcc 240  Q
    |||||| ||||||||||||||  ||||||||| |||||||||| |||||||||  || |||||  | |||||||||||||||||||| |||| ||||||     
T  43856788 tttttggatagcaaaatcaattctcgtaaacataacattcatggacctaggagtcatgacattgttgtgcatgaccctttgaactctatgtagaaggtca 43856887  T
Q  241 acaatctctg 250  Q
    |||| |||||    
T  43856888 acaacctctg 43856897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 160 - 250
Target Start/End: Original strand, 4501191 - 4501282
Alignment:
Q  160 aatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctg 250  Q
    |||| |||||||||||||||||||||| |||||||| || ||||| |||||||||| | |||||||||| |||| |||||| |||| |||||    
T  4501191 aatcctcgtaaacacaacattcatgaatctaggagacatgacattgctatgcatgaacttttgaactctatgtagaaggtcaacaacctctg 4501282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 152 - 250
Target Start/End: Original strand, 27521395 - 27521494
Alignment:
Q  152 gcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctg 250  Q
    |||||||||||| |||||||||||||||||||  || ||||||| || |||||  ||||||||||| |||||||||| |||| |||||| |||| |||||    
T  27521395 gcaaaatcaatcctcgtaaacacaacattcatagacttaggagacatgacattgttatgcatgaccttttgaactctatgtagaaggtcaacaacctctg 27521494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 170 - 250
Target Start/End: Original strand, 19277235 - 19277316
Alignment:
Q  170 aacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctg 250  Q
    ||||||||||||||| |||||||||| || ||||| |||||||||||| |||||||||| |||| |||||| |||| |||||    
T  19277235 aacacaacattcatggacctaggagacatgacattgctatgcatgaccttttgaactctatgtagaaggtcaacaacctctg 19277316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 23037469 - 23037542
Alignment:
Q  152 gcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaac 225  Q
    |||||||||||| |||||||||||| ||||||  ||||| ||||||| ||||| |||||||| |||||||||||    
T  23037469 gcaaaatcaatcctcgtaaacacaaaattcatagacctaagagaaatgacattgctatgcataaccctttgaac 23037542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 141 - 226
Target Start/End: Complemental strand, 30216252 - 30216167
Alignment:
Q  141 ctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaact 226  Q
    ||||||||||  ||||||| ||| |||| ||||||||||||||  |||||||||| || ||||| |||||||||||| ||||||||    
T  30216252 ctttttgaatgacaaaatcgatcctcgtgaacacaacattcatagacctaggagatatgacattgctatgcatgaccatttgaact 30216167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 250
Target Start/End: Original strand, 22197891 - 22198009
Alignment:
Q  132 ccgcgaagcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tg 230  Q
    |||| ||||||||||| ||  |||||||||| ||||||||||||||||||||  |||||||||| || || || |||| ||| ||| |||||||||| ||    
T  22197891 ccgccaagcctttttggatgacaaaatcaattatcgtaaacacaacattcattgacctaggagacatgacgttgctat-cataaccttttgaactctatg 22197989  T
Q  231 taaaaggtccacaatctctg 250  Q
    || |||||| |||| |||||    
T  22197990 tagaaggtcaacaacctctg 22198009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 250
Target Start/End: Complemental strand, 22239930 - 22239812
Alignment:
Q  132 ccgcgaagcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tg 230  Q
    |||| ||||||||||| ||  |||||||||| ||||||||||||||||||||  |||||||||| || || || |||| ||| ||| |||||||||| ||    
T  22239930 ccgccaagcctttttggatgacaaaatcaattatcgtaaacacaacattcattgacctaggagacatgacgttgctat-cataaccttttgaactctatg 22239832  T
Q  231 taaaaggtccacaatctctg 250  Q
    || |||||| |||| |||||    
T  22239831 tagaaggtcaacaacctctg 22239812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 228
Target Start/End: Original strand, 24527514 - 24527589
Alignment:
Q  153 caaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    ||||| ||||| |||| || |||||||||||| ||| ||||||||| ||||| |||||||||||| ||||||||||    
T  24527514 caaaaccaatcctcgtgaatacaacattcatggaccaaggagaaatgacattgctatgcatgaccttttgaactct 24527589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 250
Target Start/End: Complemental strand, 5972410 - 5972300
Alignment:
Q  141 ctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtc 239  Q
    ||||||| || ||||||  |||| |||||||||||||||||||  | || |||||||| ||||| |||||||||||  |||||||||| |||| ||||||    
T  5972410 ctttttggatggcaaaactaatcctcgtaaacacaacattcatagatctgggagaaatgacattactatgcatgacattttgaactctatgtagaaggtc 5972311  T
Q  240 cacaatctctg 250  Q
     |||| |||||    
T  5972310 aacaacctctg 5972300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 228
Target Start/End: Complemental strand, 25187112 - 25187038
Alignment:
Q  154 aaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    |||||||||||| |  ||||||||||||||| | |||||||| || ||||| |||||||||||| ||||||||||    
T  25187112 aaaatcaatcattgggaacacaacattcatggatctaggagacatgacattgctatgcatgaccttttgaactct 25187038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 28517480 - 28517394
Alignment:
Q  142 tttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    |||||| || |||||| ||||| |||||||||||||||||||| || ||||||| || |||||  ||||||| |||||||| |||||    
T  28517480 tttttggatggcaaaaccaatcctcgtaaacacaacattcatggacttaggagacataacattgttatgcataaccctttggactct 28517394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 222
Target Start/End: Complemental strand, 45003092 - 45003010
Alignment:
Q  140 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttg 222  Q
    |||||||| || |||||||||||| ||||||||||||||||||||  |||| |||| || ||||| |||||||| || |||||    
T  45003092 cctttttggatggcaaaatcaatcttcgtaaacacaacattcatggtcctatgagacataacattgctatgcataactctttg 45003010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 250
Target Start/End: Complemental strand, 40726673 - 40726564
Alignment:
Q  142 tttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtcc 240  Q
    |||||| || |||||||||||| || ||||||||||||||||| | |||||||| ||  ||||  ||||||| |||||||| ||||| |||| ||||||     
T  40726673 tttttggatggcaaaatcaatcctcataaacacaacattcatggatctaggagacatagcattgttatgcataaccctttggactctatgtagaaggtca 40726574  T
Q  241 acaatctctg 250  Q
    |||| |||||    
T  40726573 acaacctctg 40726564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 217
Target Start/End: Complemental strand, 36559053 - 36558985
Alignment:
Q  149 atagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgacc 217  Q
    |||||||||||| ||||||||||||||||||||||| |||||  ||| || | |||| |||||||||||    
T  36559053 atagcaaaatcattcatcgtaaacacaacattcatggacctataagacatgatatttatatgcatgacc 36558985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 45614025 - 45613949
Alignment:
Q  152 gcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    |||||| ||||| |||||||||||||||||||| ||||||||||  | |||||  ||||||||| | ||||||||||    
T  45614025 gcaaaaccaatcctcgtaaacacaacattcatggacctaggagatttgacattgttatgcatgaacttttgaactct 45613949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 250
Target Start/End: Original strand, 5825197 - 5825296
Alignment:
Q  152 gcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctg 250  Q
    |||||| ||||| ||||||||||||||| |||  |||||||||| || ||||| |||||||| |||||||  ||||| |||| |||||| |||| |||||    
T  5825197 gcaaaaccaatcctcgtaaacacaacatccatagacctaggagacataacattgctatgcataaccctttcgactctatgtagaaggtcaacaacctctg 5825296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 204
Target Start/End: Complemental strand, 27027824 - 27027761
Alignment:
Q  141 ctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatt 204  Q
    ||||||| ||||||||| ||||| |||| ||||||||||||||| |||||||||| || |||||    
T  27027824 ctttttggatagcaaaaccaatcctcgtgaacacaacattcatggacctaggagacatgacatt 27027761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 2904292 - 2904346
Alignment:
Q  140 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggag 194  Q
    |||||||| ||||||||| |||| ||||||||||||||||||||  |||||||||    
T  2904292 cctttttggatagcaaaaccaattatcgtaaacacaacattcatagacctaggag 2904346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 224
Target Start/End: Complemental strand, 43334034 - 43333941
Alignment:
Q  131 gccgcgaagcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaa 224  Q
    ||||| ||| |||||||||| |||||| |||||||| ||||| ||||||||||  | |||||||| ||  ||||  ||||||||||| ||||||    
T  43334034 gccgccaagtctttttgaatggcaaaaccaatcatcataaactcaacattcatagatctaggagacatgtcattgatatgcatgaccttttgaa 43333941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 228
Target Start/End: Original strand, 982861 - 982949
Alignment:
Q  140 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    |||||||| || |||| | ||||| |||| ||||||||||||||| || ||| ||| || |||||  ||||||||||| ||||||||||    
T  982861 cctttttggatggcaataccaatcctcgtgaacacaacattcatggacatagaagacatgacattgatatgcatgaccttttgaactct 982949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 10905047 - 10905118
Alignment:
Q  157 atcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    ||||||| | |||||||| ||||||||| |||||||||| || |||||  |||||||| | |||||||||||    
T  10905047 atcaatccttgtaaacacgacattcatggacctaggagacatgacattgttatgcatggctctttgaactct 10905118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 34772696 - 34772770
Alignment:
Q  142 tttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgac 216  Q
    ||||||||| |||||| |||| ||||||||||||| ||||||| |||||| | | || |||||  ||||||||||    
T  34772696 tttttgaatggcaaaaccaattatcgtaaacacaatattcatggacctagaaaacatgacattgatatgcatgac 34772770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 195
Target Start/End: Complemental strand, 42295378 - 42295324
Alignment:
Q  141 ctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggaga 195  Q
    ||||||| ||| |||||  ||||||||||||||||| ||||||| ||||||||||    
T  42295378 ctttttggataacaaaactaatcatcgtaaacacaagattcatggacctaggaga 42295324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 195
Target Start/End: Complemental strand, 45974767 - 45974739
Alignment:
Q  167 gtaaacacaacattcatgaacctaggaga 195  Q
    |||||||||||||||||||||||||||||    
T  45974767 gtaaacacaacattcatgaacctaggaga 45974739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 142 - 250
Target Start/End: Original strand, 4419177 - 4419286
Alignment:
Q  142 tttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtcc 240  Q
    |||||| || |||||| |||||||||||||||||||||||||| |||||||||| || |||||  ||||||| |||||||||||||| |||| ||||||     
T  4419177 tttttggatggcaaaaccaatcatcgtaaacacaacattcatggacctaggagacataacattgttatgcataaccctttgaactctatgtagaaggtca 4419276  T
Q  241 acaatctctg 250  Q
    |||| |||||    
T  4419277 acaacctctg 4419286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 140 - 228
Target Start/End: Original strand, 3329908 - 3329996
Alignment:
Q  140 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    |||||||| || |||||| ||||||||||||||||| |||||||| |||||||||| || ||||| |||||||| |||||||| |||||    
T  3329908 cctttttggatggcaaaaccaatcatcgtaaacacagcattcatggacctaggagacataacattgctatgcataaccctttggactct 3329996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 141 - 227
Target Start/End: Original strand, 23242813 - 23242899
Alignment:
Q  141 ctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactc 227  Q
    ||||||| ||| |||||||||||||||||||||||| ||| ||| ||||| ||||||| |||||  ||||||||||||||| |||||    
T  23242813 ctttttggataacaaaatcaatcatcgtaaacacaatatttatggacctaagagaaatgacattgttatgcatgaccctttaaactc 23242899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 155 - 228
Target Start/End: Original strand, 16955387 - 16955460
Alignment:
Q  155 aaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    ||||||||| ||||||||||||||||||||  ||||||||| || ||||| |||||||||||| ||||||||||    
T  16955387 aaatcaatcctcgtaaacacaacattcatgggcctaggagacatgacattgctatgcatgaccttttgaactct 16955460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 226
Target Start/End: Original strand, 8738069 - 8738203
Alignment:
Q  92 aattacacatgagtgaaagacaaacaggtaaaacactgagccgcgaagcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctag 191  Q
    |||||||||||| ||||||  || | | ||| | |||| ||||| || | |||||| ||  ||||||||||| | ||| ||||||||||||||||||||     
T  8738069 aattacacatgaatgaaaggtaagcggataacaaactgcgccgctaaacttttttggatgacaaaatcaatctttgtatacacaacattcatgaacctaa 8738168  T
Q  192 gagaaattacatttctatgcatgaccctttgaact 226  Q
    |||| || |||||| ||||||||| ||||||||||    
T  8738169 gagacatgacatttttatgcatgagcctttgaact 8738203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 140 - 249
Target Start/End: Original strand, 25504207 - 25504317
Alignment:
Q  140 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggt 238  Q
    ||||||||||| |||||| ||||| || ||||||||| ||||||| ||||| |||| || ||||| |||||||||||| ||| |||||| | ||||||||    
T  25504207 cctttttgaatggcaaaagcaatcctcataaacacaatattcatggacctatgagacatgacattactatgcatgaccttttaaactctatttaaaaggt 25504306  T
Q  239 ccacaatctct 249  Q
    | ||| |||||    
T  25504307 caacagtctct 25504317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 141 - 222
Target Start/End: Complemental strand, 50001120 - 50001039
Alignment:
Q  141 ctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttg 222  Q
    ||||||| || |||||||||||| |||||||||||||||| ||| | |||||||| || ||||| |||||||| ||||||||    
T  50001120 ctttttggatggcaaaatcaatcttcgtaaacacaacatttatggatctaggagacataacattgctatgcataaccctttg 50001039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 228
Target Start/End: Original strand, 53170424 - 53170513
Alignment:
Q  140 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaac-ctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    |||||||  ||||||||||||||| |||| |||||||||||||||| |  ||||||| || ||||| |||||||||||| ||||||||||    
T  53170424 cctttttagatagcaaaatcaatcctcgtgaacacaacattcatgacctataggagacatgacattgctatgcatgaccttttgaactct 53170513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 18981714 - 18981651
Alignment:
Q  159 caatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttga 223  Q
    |||||||||||||||||||||||||| ||||| |||| || ||||| ||||||||||||||||||    
T  18981714 caatcatcgtaaacacaacattcatggaccta-gagacatgacattactatgcatgaccctttga 18981651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 220
Target Start/End: Complemental strand, 23233312 - 23233229
Alignment:
Q  137 aagcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctt 220  Q
    ||||||||||| ||||| ||||||||| || |||| |||||||||||||| |||||| | || |||||  ||||||||||||||    
T  23233312 aagcctttttggatagccaaatcaatcctcataaagacaacattcatgaatctaggaaacatgacattattatgcatgaccctt 23233229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 244
Target Start/End: Complemental strand, 55933653 - 55933550
Alignment:
Q  142 tttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtcc 240  Q
    |||||| || ||||||||||||||||||||||||||||||| | |||||||||| || | |||  |||| || |||||||| ||||| |||| ||||||     
T  55933653 tttttggatggcaaaatcaatcatcgtaaacacaacattcacggacctaggagacataatattgttatgtataaccctttggactctatgtagaaggtca 55933554  T
Q  241 acaa 244  Q
    ||||    
T  55933553 acaa 55933550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 213
Target Start/End: Complemental strand, 48657098 - 48657037
Alignment:
Q  152 gcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcat 213  Q
    ||||||||||||||||||||||||||||||||  ||||| |||| || ||||| ||||||||    
T  48657098 gcaaaatcaatcatcgtaaacacaacattcatagacctatgagacataacattgctatgcat 48657037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 228
Target Start/End: Original strand, 23255637 - 23255713
Alignment:
Q  152 gcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    |||||||||||| |||||||||||| ||||||| || ||||||| || |||||  ||||||| |||||||| |||||    
T  23255637 gcaaaatcaatcctcgtaaacacaatattcatggacttaggagacataacattgttatgcataaccctttggactct 23255713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 140 - 228
Target Start/End: Complemental strand, 30940927 - 30940839
Alignment:
Q  140 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    |||||||| || |||||||||||| || | ||||||||||||||  |||||||| | || |||||  ||||||||||| ||||||||||    
T  30940927 cctttttggatggcaaaatcaatcctcatgaacacaacattcatagacctaggatatatgacattgttatgcatgaccttttgaactct 30940839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 250
Target Start/End: Complemental strand, 600885 - 600776
Alignment:
Q  142 tttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtcc 240  Q
    |||||| || ||||||  |||||||||||||||| |||| ||| |||||||||| || ||||   ||| ||||||| |||||||||| |||| ||||||     
T  600885 tttttggatggcaaaactaatcatcgtaaacacagcattaatggacctaggagacatgacatagttatacatgaccttttgaactctatgtagaaggtca 600786  T
Q  241 acaatctctg 250  Q
    |||| |||||    
T  600785 acaacctctg 600776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 221
Target Start/End: Original strand, 53619498 - 53619579
Alignment:
Q  140 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgacccttt 221  Q
    |||||||| || |||||| ||||  |||||||||||||||||||| ||||| |||| || |||||  ||||||| |||||||    
T  53619498 cctttttggatggcaaaaccaattctcgtaaacacaacattcatggacctaagagacataacattgttatgcataacccttt 53619579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 38535744 - 38535676
Alignment:
Q  160 aatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    |||| ||||||||||||||| |||| |||||  ||| || ||||| ||||||||||| |||||||||||    
T  38535744 aatcctcgtaaacacaacatccatggacctataagacatgacattgctatgcatgactctttgaactct 38535676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 228
Target Start/End: Original strand, 39001309 - 39001397
Alignment:
Q  140 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    |||||||| ||  ||||| ||||| |||||||||||||||||||| |||||||||| |  |||||  ||||||| | |||||| |||||    
T  39001309 cctttttggatgacaaaaccaatcctcgtaaacacaacattcatggacctaggagacacaacattgttatgcataatcctttggactct 39001397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 226
Target Start/End: Complemental strand, 49344325 - 49344248
Alignment:
Q  153 caaaatcaatcatcgtaaacacaacatt----catgaacctaggagaaattacatttctatgcatgaccctttgaact 226  Q
    |||||||||||||| |||||||||||||    |||| | |||||||| ||||||||||||||  ||||||||| ||||    
T  49344325 caaaatcaatcatcataaacacaacattaattcatggatctaggagacattacatttctatgagtgaccctttaaact 49344248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 204
Target Start/End: Complemental strand, 50442674 - 50442610
Alignment:
Q  140 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatt 204  Q
    |||||||| || |||||| ||||| || |||||||||||| ||||||||||||||| || |||||    
T  50442674 cctttttggatggcaaaaccaatcctcttaaacacaacatccatgaacctaggagacataacatt 50442610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 189
Target Start/End: Original strand, 1041351 - 1041386
Alignment:
Q  154 aaaatcaatcatcgtaaacacaacattcatgaacct 189  Q
    |||||||||||||| |||||||||||||||||||||    
T  1041351 aaaatcaatcatcgaaaacacaacattcatgaacct 1041386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 226
Target Start/End: Original strand, 26521392 - 26521486
Alignment:
Q  131 gccgcgaagcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaact 226  Q
    ||||| || |||||||| ||  ||||| ||||| |||||||||||||| |||||  ||||||| | || ||||| ||| |||||||||||||||||    
T  26521392 gccgctaaacctttttggatgacaaaaccaatcctcgtaaacacaaca-tcatgggcctaggatacatgacattgctacgcatgaccctttgaact 26521486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 228
Target Start/End: Complemental strand, 34107878 - 34107803
Alignment:
Q  153 caaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    ||||| ||||| |||| ||||||||||||||| | |||||||| || |||||  ||||||||||  ||||||||||    
T  34107878 caaaaccaatcctcgtgaacacaacattcatggatctaggagacataacattgttatgcatgactttttgaactct 34107803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 50464490 - 50464403
Alignment:
Q  141 ctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    ||||||| || ||||||| |||| |||||||||||||||||||  |  | ||||| || |||||  ||||||||||||||| ||||||    
T  50464490 ctttttggatggcaaaataaatcctcgtaaacacaacattcatatatttgggagacatgacattgttatgcatgaccctttaaactct 50464403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 250
Target Start/End: Complemental strand, 56462289 - 56462190
Alignment:
Q  152 gcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctg 250  Q
    |||||| ||||  |||||||||||||||| ||| || ||||||| || |||||   |||||||| |||||||||||| |||| |||||| |||| |||||    
T  56462289 gcaaaaccaattctcgtaaacacaacatttatggacttaggagacatgacattgtcatgcatgatcctttgaactctatgtagaaggtcaacaacctctg 56462190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 119
Target Start/End: Complemental strand, 214995 - 214961
Alignment:
Q  85 atatgaaaattacacatgagtgaaagacaaacagg 119  Q
    ||||||||||||||||||||||||| |||||||||    
T  214995 atatgaaaattacacatgagtgaaatacaaacagg 214961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 238
Target Start/End: Complemental strand, 6865984 - 6865916
Alignment:
Q  170 aacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggt 238  Q
    |||| ||||||||||| | ||||||| || ||||| |||||||| |||||||||||||| ||||||||||    
T  6865984 aacagaacattcatgatc-taggagacatgacattgctatgcattaccctttgaactctatgtaaaaggt 6865916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 226
Target Start/End: Original strand, 45661604 - 45661689
Alignment:
Q  141 ctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaact 226  Q
    ||||||| |||| |||| ||||| |||||||||||| ||||||| ||||| |||  || |||||  | || |||||||||||||||    
T  45661604 ctttttggatagtaaaaccaatcctcgtaaacacaatattcatggacctacgagttatgacattgttgtgtatgaccctttgaact 45661689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 132324 - 132408
Alignment:
Q  167 gtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctg 250  Q
    |||||||||||| |||||||||||  ||| || |||||  ||||| ||||||||| |||||| |||| || ||| ||||||||||    
T  132324 gtaaacacaacaatcatgaacctaaaagacatgacattgttatgcttgaccctttaaactctgtgtagaatgtcaacaatctctg 132408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 140 - 252
Target Start/End: Original strand, 22346807 - 22346920
Alignment:
Q  140 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggt 238  Q
    |||||||| || ||||||  |||| |||| |||||||||||||| ||||||||||| || |||||||||||||||||| |||||||||| |||| |||||    
T  22346807 cctttttggatggcaaaactaatcctcgtgaacacaacattcataaacctaggagacatgacatttctatgcatgaccttttgaactctgtgtagaaggt 22346906  T
Q  239 ccacaatctctgct 252  Q
    | |||| |||||||    
T  22346907 caacaacctctgct 22346920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 142 - 250
Target Start/End: Original strand, 34644480 - 34644589
Alignment:
Q  142 tttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtcc 240  Q
    |||||| || ||||||||||||||||||||||||||||||||| |||||||||| || |||||  ||||||| |||||||| ||||| |||| ||||||     
T  34644480 tttttggatggcaaaatcaatcatcgtaaacacaacattcatggacctaggagacataacattgatatgcataaccctttggactctatgtagaaggtca 34644579  T
Q  241 acaatctctg 250  Q
    |||| |||||    
T  34644580 acaacctctg 34644589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 250
Target Start/End: Original strand, 2898605 - 2898725
Alignment:
Q  131 gccgcgaagcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-t 229  Q
    ||||| ||||||||||| || |||||||||||| || |||||||||||||||||| | || |||| || | |||  ||||||||| | |||||||||| |    
T  2898605 gccgctaagcctttttggatggcaaaatcaatcctcttaaacacaacattcatgatcgtatgagacatgatattgttatgcatgatcttttgaactctat 2898704  T
Q  230 gtaaaaggtccacaatctctg 250  Q
    ||| |||||| |||| |||||    
T  2898705 gtagaaggtcaacaacctctg 2898725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 24177694 - 24177618
Alignment:
Q  152 gcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    |||||| ||||| |||| ||||||||||||||| |||||||||| || ||||| |||||||||||  ||||||||||    
T  24177694 gcaaaaccaatcctcgtgaacacaacattcatggacctaggagatatgacattgctatgcatgactttttgaactct 24177618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 228
Target Start/End: Complemental strand, 31737526 - 31737430
Alignment:
Q  131 gccgcgaagcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    ||||| ||||||||||| || |||||||||||| |||||||||| | ||||||| | |||||| | || |||||  ||||||||||| ||||||||||    
T  31737526 gccgccaagcctttttggatggcaaaatcaatcctcgtaaacacta-attcatggatctaggaaacataacattgatatgcatgaccttttgaactct 31737430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 40516057 - 40515989
Alignment:
Q  152 gcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgacccttt 221  Q
    ||||||||||| ||||||||||||||||||||||| ||| |||| |||| ||| | ||||||||||||||    
T  40516057 gcaaaatcaataatcgtaaacacaacattcatgaatcta-gagacattatattgccatgcatgacccttt 40515989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 250
Target Start/End: Original strand, 2764382 - 2764502
Alignment:
Q  131 gccgcgaagcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-t 229  Q
    ||||| || |||||||| || | ||||||||||||||||||||||||||| ||| ||||| |||| || |||||  | ||||| |||||||| ||| | |    
T  2764382 gccgctaaacctttttggatggtaaaatcaatcatcgtaaacacaacatttatggacctaagagacataacattgatttgcataaccctttggactttat 2764481  T
Q  230 gtaaaaggtccacaatctctg 250  Q
    ||| |||||| |||| |||||    
T  2764482 gtagaaggtcaacaacctctg 2764502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 140 - 228
Target Start/End: Original strand, 21472915 - 21473003
Alignment:
Q  140 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    |||||||| || |||||| || || || | ||| ||||||||||| |||||||||| || ||||| |||||||||||| ||||||||||    
T  21472915 cctttttggatggcaaaaccagtcctcctgaacgcaacattcatggacctaggagacatgacattgctatgcatgaccttttgaactct 21473003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 6670298 - 6670212
Alignment:
Q  142 tttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    |||||| || ||||||| ||| |||||||| | |||||||||||| |||||||| || |||||   ||||||||| |||||||||||    
T  6670298 tttttggatggcaaaattaattatcgtaaatataacattcatgaatctaggagatatgacattgtaatgcatgactctttgaactct 6670212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 195
Target Start/End: Original strand, 4611101 - 4611156
Alignment:
Q  140 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggaga 195  Q
    |||||||| ||  |||||||||||||||| ||||||| ||||||| ||||||||||    
T  4611101 cctttttggatgacaaaatcaatcatcgtgaacacaatattcatggacctaggaga 4611156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 244
Target Start/End: Complemental strand, 4862170 - 4862079
Alignment:
Q  154 aaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaa 244  Q
    |||||||||| |||||| ||||||||||||| | ||| | ||  | |||||  |||||||||||||||||||||| |||| |||||| ||||    
T  4862170 aaaatcaatcctcgtaatcacaacattcatggatctaagggacgtgacattgttatgcatgaccctttgaactctatgtagaaggtcaacaa 4862079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 20259964 - 20259881
Alignment:
Q  168 taaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctg 250  Q
    ||||||||||||| || ||| || |||| || ||||| |||||||||||| |||||||||| |||| |||||| |||| |||||    
T  20259964 taaacacaacatttattaacttatgagacatgacattactatgcatgaccttttgaactctatgtagaaggtcaacaacctctg 20259881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 194
Target Start/End: Original strand, 30688468 - 30688523
Alignment:
Q  139 gcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggag 194  Q
    ||||||||| ||| ||||| ||||| |||||||||||||||||||| ||| |||||    
T  30688468 gcctttttggataacaaaaccaatcctcgtaaacacaacattcatggacccaggag 30688523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 228
Target Start/End: Original strand, 38731546 - 38731609
Alignment:
Q  165 tcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    |||||||||||| ||||||| |||||||||  || |||||  | ||||||||||||||||||||    
T  38731546 tcgtaaacacaatattcatggacctaggagtcatgacattattgtgcatgaccctttgaactct 38731609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 183
Target Start/End: Complemental strand, 45835380 - 45835338
Alignment:
Q  141 ctttttgaatagcaaaatcaatcatcgtaaacacaacattcat 183  Q
    ||||||| || |||||||||||| |||||||||||||||||||    
T  45835380 ctttttggatggcaaaatcaatcctcgtaaacacaacattcat 45835338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 213
Target Start/End: Original strand, 47459594 - 47459667
Alignment:
Q  140 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcat 213  Q
    ||||||||||| || ||||||||  |||||||||||||||| ||  || ||||||| || ||||| ||||||||    
T  47459594 cctttttgaatggctaaatcaattctcgtaaacacaacatttatagacttaggagacataacattgctatgcat 47459667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 228
Target Start/End: Complemental strand, 28041322 - 28041234
Alignment:
Q  140 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    |||||||| || | |||||||||| || | | ||||||||||||| || |||  || || ||||| |||||||||||| ||||||||||    
T  28041322 cctttttggatggaaaaatcaatcctcatgagcacaacattcatggacttagaggacatgacattgctatgcatgaccttttgaactct 28041234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 126 - 232
Target Start/End: Complemental strand, 15292234 - 15292128
Alignment:
Q  126 actgagccgcgaagcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaac 225  Q
    |||| ||||| |||| |||||| || |||||||||||| || ||||||||||||||||| ||||||||||  | ||||| |||||||||||| |||||||    
T  15292234 actgcgccgccaagcttttttggatggcaaaatcaatcctcataaacacaacattcatggacctaggagatgtgacattgctatgcatgaccttttgaac 15292135  T
Q  226 tcttgta 232  Q
    | |||||    
T  15292134 ttttgta 15292128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 140 - 228
Target Start/End: Complemental strand, 2566290 - 2566202
Alignment:
Q  140 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    |||||||| || |||||||||||| |||||||||||||||| ||| | |||||||| || ||||| |||||||||||| ||||||||||    
T  2566290 cctttttggatggcaaaatcaatcctcgtaaacacaacattgatggatctaggagacatgacattgctatgcatgaccttttgaactct 2566202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 142 - 226
Target Start/End: Complemental strand, 32269990 - 32269906
Alignment:
Q  142 tttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaact 226  Q
    |||||| || || ||||||||| |||||||||||||||||||| |||||||||| || ||||| |||||||||||| ||||||||    
T  32269990 tttttggatggcgaaatcaatcctcgtaaacacaacattcatggacctaggagacatgacattgctatgcatgaccttttgaact 32269906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 140 - 222
Target Start/End: Original strand, 430514 - 430596
Alignment:
Q  140 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttg 222  Q
    |||||||| || ||| |||||||| |||||||||||||||||||| |||||||||| || ||||| |||||||| ||||||||    
T  430514 cctttttggatggcataatcaatcctcgtaaacacaacattcatggacctaggagacataacattactatgcataaccctttg 430596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 141 - 250
Target Start/End: Complemental strand, 13167104 - 13166994
Alignment:
Q  141 ctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtc 239  Q
    ||||||| ||| || ||||||||||||||||| ||||||||||| |||||||||| ||  |||| |||||||| |||||||| ||||| |||| ||||||    
T  13167104 ctttttggataacagaatcaatcatcgtaaacccaacattcatggacctaggagacataccattgctatgcataaccctttggactctatgtagaaggtc 13167005  T
Q  240 cacaatctctg 250  Q
     ||| ||||||    
T  13167004 aacagtctctg 13166994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 139 - 224
Target Start/End: Original strand, 23023506 - 23023591
Alignment:
Q  139 gcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaa 224  Q
    ||||||||| ||  ||||||||||| |||||||||||||||||||  |||||||||| || |||||  ||||||||||| ||||||    
T  23023506 gcctttttggatgacaaaatcaatcttcgtaaacacaacattcatcgacctaggagacatgacattgatatgcatgaccttttgaa 23023591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 250
Target Start/End: Complemental strand, 37873834 - 37873722
Alignment:
Q  139 gcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaagg 237  Q
    ||||||||  ||||||||||||||| || ||||||||||||||||  |||||| ||  || |||||  | |||||||||||||||||||| |||| ||||    
T  37873834 gccttttttgatagcaaaatcaatcctcttaaacacaacattcatagacctagaagtcatgacattgttctgcatgaccctttgaactctatgtagaagg 37873735  T
Q  238 tccacaatctctg 250  Q
    || |||| |||||    
T  37873734 tcaacaacctctg 37873722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 228
Target Start/End: Complemental strand, 22188825 - 22188762
Alignment:
Q  165 tcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    |||||||||||||||||||||| |||||||| || | |||  ||||||||||| ||||||||||    
T  22188825 tcgtaaacacaacattcatgaatctaggagacatgatattgttatgcatgaccttttgaactct 22188762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 229
Target Start/End: Original strand, 16017097 - 16017174
Alignment:
Q  152 gcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactctt 229  Q
    ||||||||||||||| |||| || |||  ||| ||||||||||| |  ||||| |||||||||||| |||||||||||    
T  16017097 gcaaaatcaatcatcttaaaaaccacacccataaacctaggagacacaacattgctatgcatgaccttttgaactctt 16017174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 19260236 - 19260304
Alignment:
Q  160 aatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    |||||||||||||| ||||||||||||  ||  ||| ||||||||  |||| |||||||||||||||||    
T  19260236 aatcatcgtaaacataacattcatgaatatataagacattacattgttatgtatgaccctttgaactct 19260304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 228
Target Start/End: Original strand, 35310372 - 35310448
Alignment:
Q  152 gcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    |||||| ||||  |||||||||||||||||||| |||||||||| || |||||  ||||||  |||||||| |||||    
T  35310372 gcaaaaccaattctcgtaaacacaacattcatggacctaggagacataacattgatatgcaaaaccctttggactct 35310448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 183
Target Start/End: Original strand, 43349981 - 43350015
Alignment:
Q  149 atagcaaaatcaatcatcgtaaacacaacattcat 183  Q
    ||||||||||||||||| |||||||||||||||||    
T  43349981 atagcaaaatcaatcattgtaaacacaacattcat 43350015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 217
Target Start/End: Original strand, 15809973 - 15810038
Alignment:
Q  152 gcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgacc 217  Q
    |||||||||||| |||| ||||| |||||||||  ||||||||| || ||||| |||| |||||||    
T  15809973 gcaaaatcaatcctcgtgaacacgacattcatgggcctaggagacatgacattgctatacatgacc 15810038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 228
Target Start/End: Complemental strand, 25663208 - 25663139
Alignment:
Q  159 caatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    ||||| |||||||| ||||||||||| ||||||| || || |||||  ||||||| |||||||| |||||    
T  25663208 caatcctcgtaaactcaacattcatggacctaggggacataacattgatatgcataaccctttggactct 25663139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 228
Target Start/End: Original strand, 38875570 - 38875638
Alignment:
Q  159 caatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    |||||||||||||||||||| ||||  |||||||||| |  |||||  ||||||||||| ||||||||||    
T  38875570 caatcatcgtaaacacaaca-tcattgacctaggagacaagacattgttatgcatgaccttttgaactct 38875638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 140 - 228
Target Start/End: Original strand, 17344550 - 17344638
Alignment:
Q  140 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    |||||||| || | |||||||||| |||||||||||||||||||| |||||||||| || |||||  ||||||||||| ||||||||||    
T  17344550 cctttttggatcgaaaaatcaatcctcgtaaacacaacattcatggacctaggagacatgacattgttatgcatgaccttttgaactct 17344638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 140 - 250
Target Start/End: Complemental strand, 4413261 - 4413150
Alignment:
Q  140 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggt 238  Q
    |||||||| || |||||||||||| || | ||||||||||||||| |||||||||| || || || |||||||||||| ||||||| || |||| |||||    
T  4413261 cctttttggatggcaaaatcaatcctcatgaacacaacattcatggacctaggagacatgactttgctatgcatgaccttttgaaccctatgtagaaggt 4413162  T
Q  239 ccacaatctctg 250  Q
    | ||||||||||    
T  4413161 caacaatctctg 4413150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 252
Target Start/End: Original strand, 13413262 - 13413376
Alignment:
Q  139 gcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaagg 237  Q
    ||||||||| || |||||| ||||  || ||||||||||||||||| |||||||||| || |||||  ||||||||||| |||||||||| |||| ||||    
T  13413262 gcctttttggatggcaaaaccaattctcataaacacaacattcatggacctaggagacatgacattgttatgcatgaccttttgaactctatgtagaagg 13413361  T
Q  238 tccacaatctctgct 252  Q
    || |||  |||||||    
T  13413362 tcaacagcctctgct 13413376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 149 - 190
Target Start/End: Complemental strand, 26407880 - 26407839
Alignment:
Q  149 atagcaaaatcaatcatcgtaaacacaacattcatgaaccta 190  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  26407880 atagcaaaatcaatcatcgtaaacacaacattcatgaaccta 26407839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 228
Target Start/End: Complemental strand, 9685610 - 9685522
Alignment:
Q  140 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    |||||||| || |||||| ||||| | || ||||||||||||||| |||||||||| || ||||| |||| ||||||| ||||||||||    
T  9685610 cctttttggatggcaaaaacaatctttgtgaacacaacattcatggacctaggagacatgacattgctatccatgaccttttgaactct 9685522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 41868091 - 41868015
Alignment:
Q  152 gcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    |||||| ||||| |||||||||||||||||||| |||| ||||| || |||||  ||||||||||| ||||||||||    
T  41868091 gcaaaaccaatcctcgtaaacacaacattcatggacctgggagacatgacattgttatgcatgaccttttgaactct 41868015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 222
Target Start/End: Original strand, 27502274 - 27502356
Alignment:
Q  140 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttg 222  Q
    |||||||| || |||||||||||| |||||||||||||||||||  | |||||||| || | ||| |||||||| ||||||||    
T  27502274 cctttttggattgcaaaatcaatcttcgtaaacacaacattcatagatctaggagacatgatattgctatgcataaccctttg 27502356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 250
Target Start/End: Complemental strand, 7761049 - 7760929
Alignment:
Q  131 gccgcgaagcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-t 229  Q
    ||||| ||||||||||| ||  ||||||||||  |||||| |||| ||||| ||||| || |||| || ||||| ||| |||||| |||||||||||| |    
T  7761049 gccgctaagcctttttggatgtcaaaatcaattttcgtaagcacatcattcttgaacttatgagacatcacattgctacgcatgatcctttgaactctat 7760950  T
Q  230 gtaaaaggtccacaatctctg 250  Q
    ||| |||||| |||| |||||    
T  7760949 gtagaaggtcaacaacctctg 7760929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 250
Target Start/End: Complemental strand, 16352027 - 16351928
Alignment:
Q  152 gcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctg 250  Q
    |||||| ||||||||||||||| || ||||||| ||||| |||| || |||||  | ||||||||| |||||||||| |||| |||||| |||| |||||    
T  16352027 gcaaaaacaatcatcgtaaacataatattcatgtacctaagagacatgacattgttgtgcatgaccatttgaactctatgtagaaggtcaacaacctctg 16351928  T

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Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 250
Target Start/End: Original strand, 44686348 - 44686439
Alignment:
Q  160 aatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctg 250  Q
    |||| |||||||||||||||||| | |||||||||| || ||||| |||||||| |||||||| | ||| |||| |||||| |||| |||||    
T  44686348 aatcctcgtaaacacaacattcacggacctaggagacataacattgctatgcataaccctttggaatctatgtagaaggtcaacaaactctg 44686439  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 238
Target Start/End: Complemental strand, 19161965 - 19161879
Alignment:
Q  153 caaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggt 238  Q
    ||||||||||| ||| |||||||  ||||||  |||||||||| || |||||  ||||||||||| |||||||||| ||||||||||    
T  19161965 caaaatcaatcctcgaaaacacactattcattgacctaggagacatgacattgatatgcatgaccttttgaactctatgtaaaaggt 19161879  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 228
Target Start/End: Complemental strand, 18745149 - 18745061
Alignment:
Q  140 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    |||||||| || |||||| ||||| |  ||||||||||||||||  |||||||| | || ||||| |||||||||| | ||||||||||    
T  18745149 cctttttggatggcaaaaccaatccttataaacacaacattcatagacctaggaaatatgacattgctatgcatgatcttttgaactct 18745061  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 227
Target Start/End: Original strand, 3825629 - 3825725
Alignment:
Q  131 gccgcgaagcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactc 227  Q
    ||||| ||| ||||||| ||  ||||||| ||| || ||||||||||||| |||  ||||| ||| || ||||| ||||||||||  ||||||||||    
T  3825629 gccgcaaagtctttttggatgacaaaatcgatcttcataaacacaacatttatggtcctagaagacatgacattgctatgcatgattctttgaactc 3825725  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 250
Target Start/End: Complemental strand, 8036677 - 8036566
Alignment:
Q  142 tttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatt--tctatgcatgaccctttgaactct-tgtaaaaggt 238  Q
    |||||||||  ||||||||||||| ||||| |||| ||  | | |||||||||| || |||||  | ||||||| | |||||||||||| ||||||||||    
T  8036677 tttttgaatgacaaaatcaatcattgtaaagacaatatctacggacctaggagacatgacattgatatatgcataaacctttgaactctatgtaaaaggt 8036578  T
Q  239 ccacaatctctg 250  Q
    | |||| |||||    
T  8036577 caacaacctctg 8036566  T

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Target: scaffold0148 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 132 - 250
Target Start/End: Original strand, 33154 - 33273
Alignment:
Q  132 ccgcgaagcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tg 230  Q
    |||| ||||||||||| ||  ||||||||||| |||||||||| || |||||| |||||||||| || | ||| |||||||||||| |||||||||| ||    
T  33154 ccgccaagcctttttggatgacaaaatcaatcctcgtaaacacgacgttcatggacctaggagacataaaattgctatgcatgaccttttgaactctatg 33253  T
Q  231 taaaaggtccacaatctctg 250  Q
    || |||||| |||| |||||    
T  33254 tagaaggtcaacaacctctg 33273  T

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Target: scaffold0009 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 103018 - 103101
Alignment:
Q  140 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttga 223  Q
    |||||||| || |||||| ||||| |||||||||||||||||||| |||||||||| |  |||||  ||||||||||| |||||    
T  103018 cctttttggatggcaaaaccaatcctcgtaaacacaacattcatggacctaggagacacgacattgttatgcatgaccttttga 103101  T

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Target: scaffold0490 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 6279 - 6334
Alignment:
Q  173 acaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 228  Q
    |||||||||||| |||||||||| || ||||| |||||||||||| ||||||||||    
T  6279 acaacattcatggacctaggagacatgacattgctatgcatgaccttttgaactct 6334  T

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Target: scaffold0361 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 224
Target Start/End: Complemental strand, 17468 - 17390
Alignment:
Q  144 tttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaa 224  Q
    |||| ||||||||| |||||||| ||||||||||||||||| ||||| |||| |  |||||  ||||||||||| ||||||    
T  17468 tttggatagcaaaagcaatcatcttaaacacaacattcatggacctaagagaca--acattattatgcatgaccatttgaa 17390  T

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Target: scaffold1768 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold1768
Description:

Target: scaffold1768; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 226
Target Start/End: Complemental strand, 382 - 293
Alignment:
Q  137 aagcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaact 226  Q
    ||||||||||| || ||||||  |||| ||||||||||||| |||||  | |||||||| || ||||| ||||| |||||  ||||||||    
T  382 aagcctttttggatggcaaaactaatcctcgtaaacacaacgttcatcgatctaggagacatgacattgctatgtatgactttttgaact 293  T

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