View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0743_low_112 (Length: 255)
Name: NF0743_low_112
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_low_112 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 54 - 255
Target Start/End: Complemental strand, 3113873 - 3113672
Alignment:
| Q |
54 |
aagattcttattttgaaccatgttgcagggaatcaaacaaacaagttgagggtattgtcaaatttctaaaacaagttgaacctagttatgtcgttttgat |
153 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3113873 |
aagattcttattttgaaccatgttgctgg-aatcaagcaaacaagttgagg-tattgacaaatttctaaaacaagttgaacctagttatgtcgttttgat |
3113776 |
T |
|
| Q |
154 |
ttcaagcttttatttcgcttttttccttgtacatttcataatgattgacttag--ctgttatcaattttgcaaaatgtatattaatttggctggtgggta |
251 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3113775 |
ttcaagcttttatttcccttttttccttgtacatttcataatgattgacttagctctgttatcaattttgcaaaatgtatattaatttggttggtgggta |
3113676 |
T |
|
| Q |
252 |
gttt |
255 |
Q |
| |
|
|||| |
|
|
| T |
3113675 |
gttt |
3113672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 3107557 - 3107602
Alignment:
| Q |
58 |
ttcttattttgaaccatgttgcagggaatcaaacaaacaagttgagg |
104 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
3107557 |
ttcttgttttgaaccatgttgca-ggaatcaagcaaacaagttgagg |
3107602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 61 - 195
Target Start/End: Original strand, 33376619 - 33376753
Alignment:
| Q |
61 |
ttattttgaaccatgttgcagggaatcaaacaaacaagttgagggtattgtcaaatttctaaaacaagttgaacctagttatgtcgttttgatttcaagc |
160 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||| | | |||||||||||||||||||||||||||| | || ||||||||||||||||||| |
|
|
| T |
33376619 |
ttattttgacccatgttgcagg-aatcaaacaaacaaatcaaaaatattgtcaaatttctaaaacaagttgaatgtgattttgtcgttttgatttcaagc |
33376717 |
T |
|
| Q |
161 |
ttttatttcgctt-ttttccttgtacatttcataat |
195 |
Q |
| |
|
|||| ||| ||| ||||||||||| |||| ||||| |
|
|
| T |
33376718 |
ttttcttttccttattttccttgtatattttataat |
33376753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 164
Target Start/End: Complemental strand, 14839148 - 14839076
Alignment:
| Q |
91 |
caaacaagttgagggtattgtcaaatttctaaaacaagttgaacctagttatgtcgttttgatttcaagctttt |
164 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||| ||||| || ||| | ||||||||||||||||||||| |
|
|
| T |
14839148 |
caaacaagttgaggatattgtcaaattattaaaacaa-ttgaaacttgttttatcgttttgatttcaagctttt |
14839076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University