View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0743_low_113 (Length: 254)

Name: NF0743_low_113
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0743_low_113
NF0743_low_113
[»] chr6 (16 HSPs)
chr6 (10-164)||(17095606-17095768)
chr6 (10-232)||(16870317-16870529)
chr6 (75-254)||(17066990-17067177)
chr6 (10-69)||(16655782-16655841)
chr6 (162-232)||(16558631-16558701)
chr6 (112-232)||(16655604-16655728)
chr6 (154-230)||(16984995-16985068)
chr6 (10-67)||(16784994-16785051)
chr6 (16-79)||(16794920-16794983)
chr6 (10-67)||(16778898-16778955)
chr6 (46-111)||(16985125-16985190)
chr6 (10-74)||(17067196-17067260)
chr6 (26-69)||(16558479-16558522)
chr6 (191-232)||(16784821-16784862)
chr6 (38-83)||(16841534-16841579)
chr6 (37-90)||(16975726-16975779)
[»] chr3 (2 HSPs)
chr3 (18-245)||(7055669-7055894)
chr3 (10-79)||(38941733-38941802)
[»] scaffold0256 (1 HSPs)
scaffold0256 (10-67)||(6881-6938)
[»] scaffold0133 (4 HSPs)
scaffold0133 (10-67)||(6222-6279)
scaffold0133 (10-79)||(10558-10627)
scaffold0133 (28-79)||(15855-15906)
scaffold0133 (163-217)||(6069-6120)
[»] chr8 (1 HSPs)
chr8 (18-124)||(13375738-13375853)
[»] chr2 (1 HSPs)
chr2 (23-70)||(20151580-20151627)


Alignment Details
Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 10 - 164
Target Start/End: Complemental strand, 17095768 - 17095606
Alignment:
Q  10 ggagcagagatgtaagagaggaatagctgaagattggcataagatagctcacattcctgaatttaaattggaatctgatgtaaaaccaacatttcgtggt 109  Q
    |||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||    
T  17095768 ggagaagagatgtaagagaggaataggtgaagattggcattagatagctcacattcctgaatttgaattggaaactgatgcaaaaccaacatttcgtggt 17095669  T
Q  110 aa--------aatttaatgaatctctttacttgttcatttatcttttgtcttactatatcaaa 164  Q
    ||        |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17095668 aatttaatttaatttaatgaatctctttacttgttcatttatcttttgtcttactatatcaaa 17095606  T

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Target: chr6; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 10 - 232
Target Start/End: Original strand, 16870317 - 16870529
Alignment:
Q  10 ggagcagagatgtaagagaggaatagctgaagattggcataagatagctcacattcctgaatttaaattggaatctgatgtaaaaccaacatttcgtggt 109  Q
    |||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||  ||||||||||||| |||||    
T  16870317 ggagaagagatgcaagagaggaataggtgaagattggcataagatagctcacattcctgaattttatttggaatctgataaaaaaccaacattttgtggt 16870416  T
Q  110 aaaatttaatgaatctctttacttgttcatttatcttttgtcttact---atatcaaattatatagtgtgattttagacttattatattgaacaatgtgt 206  Q
      ||||||||       || |    ||| ||| |||||||| |||||   |||| |||||| || |||||||| ||||||||||||||||||||||||||    
T  16870417 --aatttaat-------ttga----ttcctttgtcttttgtgttactataatataaaattagatggtgtgattatagacttattatattgaacaatgtgt 16870503  T
Q  207 gctgagaatatcaaatcagcatggaa 232  Q
    || || ||||||| ||||||||||||    
T  16870504 gcagataatatcatatcagcatggaa 16870529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 75 - 254
Target Start/End: Complemental strand, 17067177 - 17066990
Alignment:
Q  75 aattggaatctgatgtaaaaccaacatttcgtggtaa---aatttaatgaatctctttacttgtt--catttatcttttgtcttactata---tcaaatt 166  Q
    ||||| ||||||||| |||||||||| || |||||||   ||||||| ||||||||| | || ||  | ||| | |||||||||||||||   | |||||    
T  17067177 aattgcaatctgatgcaaaaccaacaatttgtggtaatttaatttaacgaatctcttaattttttttcctttcttttttgtcttactatagaataaaatt 17067078  T
Q  167 atatagtgtgattttagacttattatattgaacaatgtgtgctgagaatatcaaatcagcatggaatacggggaagcaattctggcac 254  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||  |||||||| ||||| ||||    
T  17067077 atatactgtgattttagacttattatattgaacaatgtgtgcagagaatattaaatcagcatggaattgggggaagcgattcttgcac 17066990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 16655841 - 16655782
Alignment:
Q  10 ggagcagagatgtaagagaggaatagctgaagattggcataagatagctcacattcctga 69  Q
    |||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  16655841 ggagaagagatgcaagagaggaataggtgaagattggcataagatagctcacattcctga 16655782  T

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Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 162 - 232
Target Start/End: Original strand, 16558631 - 16558701
Alignment:
Q  162 aaattatatagtgtgattttagacttattatattgaacaatgtgtgctgagaatatcaaatcagcatggaa 232  Q
    |||||| || |||||||| |||||||||||||||||||||||||||| || ||||||| ||||||||||||    
T  16558631 aaattagatggtgtgattatagacttattatattgaacaatgtgtgcagataatatcatatcagcatggaa 16558701  T

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Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 112 - 232
Target Start/End: Complemental strand, 16655728 - 16655604
Alignment:
Q  112 aatttaatgaatctctttacttg-ttcatttatcttttgtcttactata---tcaaattatatagtgtgattttagacttattatattgaacaatgtgtg 207  Q
    ||||||| ||||| ||||| ||| ||| ||| |||||||| ||||||||   |||||| | || |||||||| |||||||||||||||||||||||||||    
T  16655728 aatttaacgaatccctttatttgattcctttgtcttttgtgttactataatatcaaatcagatggtgtgattatagacttattatattgaacaatgtgtg 16655629  T
Q  208 ctgagaatatcaaatcagcatggaa 232  Q
    | || ||||||  ||||||||||||    
T  16655628 cagataatatcttatcagcatggaa 16655604  T

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Target: chr6; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 154 - 230
Target Start/End: Complemental strand, 16985068 - 16984995
Alignment:
Q  154 actatatcaaattatatagtgtgattttagacttattatattgaacaatgtgtgctgagaatatcaaatcagcatgg 230  Q
    ||||||||||||||||| ||||||||||||||   |||||||||||||| ||||| |||||||||| ||||||||||    
T  16985068 actatatcaaattatatggtgtgattttagac---ttatattgaacaatatgtgcagagaatatcatatcagcatgg 16984995  T

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Target: chr6; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 16785051 - 16784994
Alignment:
Q  10 ggagcagagatgtaagagaggaatagctgaagattggcataagatagctcacattcct 67  Q
    |||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  16785051 ggagaagagatgcaagagaggaataggtgaagattggcataagatagctcacattcct 16784994  T

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Target: chr6; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 16794983 - 16794920
Alignment:
Q  16 gagatgtaagagaggaatagctgaagattggcataagatagctcacattcctgaatttaaattg 79  Q
    |||||| |||||||||| || ||||||||||||||||||||||||| ||||||||||| |||||    
T  16794983 gagatgcaagagaggaaaaggtgaagattggcataagatagctcacgttcctgaatttgaattg 16794920  T

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Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 16778955 - 16778898
Alignment:
Q  10 ggagcagagatgtaagagaggaatagctgaagattggcataagatagctcacattcct 67  Q
    |||| ||||||| |||||||||| || |||||||||||||||||||||||||||||||    
T  16778955 ggagaagagatgcaagagaggaaaaggtgaagattggcataagatagctcacattcct 16778898  T

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Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 16985190 - 16985125
Alignment:
Q  46 gcataagatagctcacattcctgaatttaaattggaatctgatgtaaaaccaacatttcgtggtaa 111  Q
    |||||||||||||||||||||||||||| | || ||||||| || |||||||||||| | ||||||    
T  16985190 gcataagatagctcacattcctgaattttattttgaatctggtgcaaaaccaacattccctggtaa 16985125  T

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Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 17067260 - 17067196
Alignment:
Q  10 ggagcagagatgtaagagaggaatagctgaagattggcataagatagctcacattcctgaattta 74  Q
    |||| ||||||  |||| ||||| || ||||||||||||||| ||||||||||||||||||||||    
T  17067260 ggagaagagattgaagataggaaaaggtgaagattggcataaaatagctcacattcctgaattta 17067196  T

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Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 16558479 - 16558522
Alignment:
Q  26 agaggaatagctgaagattggcataagatagctcacattcctga 69  Q
    |||||||||| ||| |||||||||||||||||||||||||||||    
T  16558479 agaggaataggtgacgattggcataagatagctcacattcctga 16558522  T

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Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 232
Target Start/End: Complemental strand, 16784862 - 16784821
Alignment:
Q  191 atattgaacaatgtgtgctgagaatatcaaatcagcatggaa 232  Q
    ||||| |||||||||||| |||||||||||||||||||||||    
T  16784862 atattaaacaatgtgtgcagagaatatcaaatcagcatggaa 16784821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 16841579 - 16841534
Alignment:
Q  38 gaagattggcataagatagctcacattcctgaatttaaattggaat 83  Q
    ||||||||||||||||||||||||||||||  ||| ||||||||||    
T  16841579 gaagattggcataagatagctcacattcctagattgaaattggaat 16841534  T

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Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 16975726 - 16975779
Alignment:
Q  37 tgaagattggcataagatagctcacattcctgaatttaaattggaatctgatgt 90  Q
    |||||||||| |||||| ||||||  ||||| ||||||||||||||||||||||    
T  16975726 tgaagattggtataagacagctcatgttcctaaatttaaattggaatctgatgt 16975779  T

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Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 7055669 - 7055894
Alignment:
Q  18 gatgtaagagaggaatagctgaagattggcataagatagctcacattcctgaatttaaattggaatctgatgtaaaaccaacatttcgtggtaa---aat 114  Q
    |||| ||||||||| ||| |||||||||||||||||||||||||||||| | ||| | |||||||||||||| |||| || ||||| |||||||   |||    
T  7055669 gatgcaagagaggagtaggtgaagattggcataagatagctcacattccggcattgatattggaatctgatgcaaaaacatcattttgtggtaatttaat 7055768  T
Q  115 ttaatgaatctcttta-cttgttcatttatcttttgtcttactatatcaaattatatagtgtgattttagacttattatattgaacaatgtgtgctgaga 213  Q
    ||||| |||| |||||  || ||| ||| |||||| |||||||||||| |   ||||  | || || |||||   ||||||||||||||| |||| ||||    
T  7055769 ttaatcaatccctttatattattcctttctcttttttcttactatatcca---atatgctatggttctagac---ttatattgaacaatgggtgcagaga 7055862  T
Q  214 atatcaaatcagcatggaatacggggaagcaa 245  Q
    |||||| ||||||||| ||||| |||||||||    
T  7055863 atatcatatcagcatgcaatacagggaagcaa 7055894  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 38941733 - 38941802
Alignment:
Q  10 ggagcagagatgtaagagaggaatagctgaagattggcataagatagctcacattcctgaatttaaattg 79  Q
    |||| ||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||| |||||    
T  38941733 ggagaagagatgcaagagaggaaaaggtgaagattggcataagatagctcacattcctgaatttgaattg 38941802  T

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Target: scaffold0256 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 6938 - 6881
Alignment:
Q  10 ggagcagagatgtaagagaggaatagctgaagattggcataagatagctcacattcct 67  Q
    |||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  6938 ggagaagagatgcaagagaggaataggtgaagattggcataagatagctcacattcct 6881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 6279 - 6222
Alignment:
Q  10 ggagcagagatgtaagagaggaatagctgaagattggcataagatagctcacattcct 67  Q
    |||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  6279 ggagaagagatgcaagagaggaataggtgaagattggcataagatagctcacattcct 6222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 10627 - 10558
Alignment:
Q  10 ggagcagagatgtaagagaggaatagctgaagattggcataagatagctcacattcctgaatttaaattg 79  Q
    |||| ||||||| |||||||| |||| |||||||||||||||||||||||||||||||||| || |||||    
T  10627 ggagaagagatgcaagagaggtataggtgaagattggcataagatagctcacattcctgaagttgaattg 10558  T

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Target: scaffold0133; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 15906 - 15855
Alignment:
Q  28 aggaatagctgaagattggcataagatagctcacattcctgaatttaaattg 79  Q
    ||||| || ||||||||||||||||||||||||||||||| ||||| |||||    
T  15906 aggaaaaggtgaagattggcataagatagctcacattcctcaatttcaattg 15855  T

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Target: scaffold0133; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 6120 - 6069
Alignment:
Q  163 aattatatagtgtgattttagacttattatattgaacaatgtgtgctgagaatat 217  Q
    |||||||| ||||||||||||||||||   |||||||||||||||| ||||||||    
T  6120 aattatatggtgtgattttagacttat---attgaacaatgtgtgcagagaatat 6069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 13375853 - 13375738
Alignment:
Q  18 gatgtaagagaggaatagctgaagattggcataagatagctcacattcctgaatttaaattggaatc------tgatgtaaaaccaacatttcgtggtaa 111  Q
    |||| |||||||||||||  ||||||||| |||||||||||||||| |||||| || ||||||||||      ||||| ||||||||||||| |||||||    
T  13375853 gatgcaagagaggaataggagaagattgggataagatagctcacatacctgaagttgaattggaatctaaatttgatgcaaaaccaacattttgtggtaa 13375754  T
Q  112 ---aatttaatgaatc 124  Q
       |||||||||||||    
T  13375753 tttaatttaatgaatc 13375738  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 20151627 - 20151580
Alignment:
Q  23 aagagaggaatagctgaagattggcataagatagctcacattcctgaa 70  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||    
T  20151627 aagagaggaataggtgaagattggcataagatagctaacattcctgaa 20151580  T

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