View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0743_low_114 (Length: 254)
Name: NF0743_low_114
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_low_114 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 44623188 - 44623062
Alignment:
| Q |
1 |
aagttttgaaacatgaatccaacttatattcatccacctttatattgtttctacatgcatctttcataatgtgaatacttgctacaatcaaatatgactc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44623188 |
aagttttgaaacatgaatccaacttatattcatccacctttatattgtttctacatgcatctttcataatgtgaatacttgctacaatcaaatatgactc |
44623089 |
T |
|
| Q |
101 |
tgaatgcttgaaaaaataaacaaattg |
127 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
44623088 |
tgaatgcttgaaaaaataaacaaattg |
44623062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 159
Target Start/End: Original strand, 48767483 - 48767521
Alignment:
| Q |
121 |
caaattggttggagctactatgagaagaagtgccatggt |
159 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
48767483 |
caaattggttggagctactatgagaagaagtgccttggt |
48767521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University