View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0743_low_118 (Length: 251)

Name: NF0743_low_118
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0743_low_118
NF0743_low_118
[»] chr4 (1 HSPs)
chr4 (1-236)||(44903948-44904183)
[»] chr7 (18 HSPs)
chr7 (1-229)||(26191960-26192188)
chr7 (1-218)||(26278391-26278608)
chr7 (1-229)||(26251543-26251771)
chr7 (1-218)||(26298143-26298360)
chr7 (1-183)||(26088477-26088659)
chr7 (1-183)||(26112265-26112447)
chr7 (1-183)||(26155883-26156065)
chr7 (1-227)||(26302504-26302730)
chr7 (1-218)||(26186943-26187160)
chr7 (9-171)||(26129270-26129432)
chr7 (1-195)||(26179778-26179972)
chr7 (4-229)||(26243098-26243323)
chr7 (1-183)||(19102817-19102999)
chr7 (1-163)||(26204580-26204742)
chr7 (1-163)||(26224217-26224379)
chr7 (1-163)||(26208106-26208268)
chr7 (1-173)||(26260567-26260739)
chr7 (1-142)||(26227667-26227808)
[»] chr5 (1 HSPs)
chr5 (10-136)||(17572404-17572530)
[»] chr8 (1 HSPs)
chr8 (82-165)||(16908517-16908600)
[»] chr1 (1 HSPs)
chr1 (82-161)||(14870059-14870138)
[»] chr6 (1 HSPs)
chr6 (10-39)||(12613700-12613729)


Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 44903948 - 44904183
Alignment:
Q  1 cctgcaacaggaggaattgtgactcattgtggttggaactcaactcttgaaagcattagtgttggtttgccaatgatcacatggccaatgtttgccgaac 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44903948 cctgcaacaggaggaattgtgactcactgtggttggaactcaactcttgaaagcattagtgttggtttgccaatgatcacatggccaatgtttgctgaac 44904047  T
Q  101 aattttacaatgagaggttgcttgttgatgttttgaagataggggtcccagttggagcaaaagaaaacaagttatggaatagctttagtgtagaggcaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  44904048 aattttacaatgagaggttgcttgttgatgttttgaagataggggtcccagttggagcaaaagaaaacaagttatggaatagctttactgtagaggcaat 44904147  T
Q  201 tgttagaagggaagagattgcaaaggctgcggagat 236  Q
     |||||||||||||||||||||||||||||||||||    
T  44904148 ggttagaagggaagagattgcaaaggctgcggagat 44904183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 149; Significance: 8e-79; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 26191960 - 26192188
Alignment:
Q  1 cctgcaacaggaggaattgtgactcattgtggttggaactcaactcttgaaagcattagtgttggtttgccaatgatcacatggccaatgtttgccgaac 100  Q
    ||||||||||| |||||||||||||| |||||||||||||| | |||||||||| | | || |||||||||||||||| | ||||||||||||||||| |    
T  26191960 cctgcaacaggtggaattgtgactcactgtggttggaactcgattcttgaaagcttgaatgctggtttgccaatgatcgcgtggccaatgtttgccgagc 26192059  T
Q  101 aattttacaatgagaggttgcttgttgatgttttgaagataggggtcccagttggagcaaaagaaaacaagttatggaatagctttagtgtagaggcaat 200  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||  || |||||||||| ||    
T  26192060 aattttacaatgagaagttgcttgttgatgttttgaagataggggtccgagttggagcaaaagaaaacaagtcatgggatagtatttgtgtagaggcgat 26192159  T
Q  201 tgttagaagggaagagattgcaaaggctg 229  Q
     ||||||||||||||||||||||||||||    
T  26192160 ggttagaagggaagagattgcaaaggctg 26192188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 26278391 - 26278608
Alignment:
Q  1 cctgcaacaggaggaattgtgactcattgtggttggaactcaactcttgaaagcattagtgttggtttgccaatgatcacatggccaatgtttgccgaac 100  Q
    |||||||  ||||| ||||||||||||||||||||||||||||||||||||||| | | || |||||||||||||||||| |||||| ||||||||||      
T  26278391 cctgcaatcggagggattgtgactcattgtggttggaactcaactcttgaaagcgtaaatgctggtttgccaatgatcacgtggccagtgtttgccgagg 26278490  T
Q  101 aattttacaatgagaggttgcttgttgatgttttgaagataggggtcccagttggagcaaaagaaaacaagttatggaatagctttagtgtagaggcaat 200  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || | |||||||||||| |||    
T  26278491 aattttacaatgagaagttgcttgttgatgttttgaagataggggtcccagttggagcaaaagtaaacaagttatggactaacattagtgtagaggaaat 26278590  T
Q  201 tgttagaagggaagagat 218  Q
     || ||||||||||||||    
T  26278591 ggtgagaagggaagagat 26278608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 26251543 - 26251771
Alignment:
Q  1 cctgcaacaggaggaattgtgactcattgtggttggaactcaactcttgaaagcattagtgttggtttgccaatgatcacatggccaatgtttgccgaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || |||||||||||||||||| |||||| ||||||| || |    
T  26251543 cctgcaacaggaggaattgtgactcattgtggttggaactcaactcttgaaagcttaaatgctggtttgccaatgatcacgtggccagtgtttgctgagc 26251642  T
Q  101 aattttacaatgagaggttgcttgttgatgttttgaagataggggtcccagttggagcaaaagaaaacaagttatggaatagctttagtgtagaggcaat 200  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||   |||||| ||||| | |    
T  26251643 aattttacaatgagaagttgctagttgatgttttgaagataggggtcccagtaggagcaaaagaaaataagttatggattaatattagtgaagaggaagt 26251742  T
Q  201 tgttagaagggaagagattgcaaaggctg 229  Q
     || ||||||||||| ||||||| |||||    
T  26251743 ggtgagaagggaagaaattgcaatggctg 26251771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 26298143 - 26298360
Alignment:
Q  1 cctgcaacaggaggaattgtgactcattgtggttggaactcaactcttgaaagcattagtgttggtttgccaatgatcacatggccaatgtttgccgaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| | | || |||||||||||||||||||||||| || ||||| || |    
T  26298143 cctgcaacaggaggaattgtgactcattgtggttggaactcaactctcgaaagcttgaatgctggtttgccaatgatcacatggcctatttttgctgagc 26298242  T
Q  101 aattttacaatgagaggttgcttgttgatgttttgaagataggggtcccagttggagcaaaagaaaacaagttatggaatagctttagtgtagaggcaat 200  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||  |  | |||||||||||  | |    
T  26298243 aattttacaatgagaagttgcttgttgatgttttaaagataggggtcccagtcggagcaaaagaaaacaagttatggcttgacattagtgtagagaaagt 26298342  T
Q  201 tgttagaagggaagagat 218  Q
     || ||||||||||||||    
T  26298343 ggtgagaagggaagagat 26298360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 26088477 - 26088659
Alignment:
Q  1 cctgcaacaggaggaattgtgactcattgtggttggaactcaactcttgaaagcattagtgttggtttgccaatgatcacatggccaatgtttgccgaac 100  Q
    |||||||||||||| ||||||||||| |||||||||||||| | |||||||||| | | || |||||||||||||||| |||||||||| ||||| || |    
T  26088477 cctgcaacaggagggattgtgactcactgtggttggaactcgattcttgaaagcttgaatgctggtttgccaatgatcgcatggccaatatttgctgagc 26088576  T
Q  101 aattttacaatgagaggttgcttgttgatgttttgaagataggggtcccagttggagcaaaagaaaacaagttatggaatagc 183  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||    
T  26088577 aattttacaatgaaaagttgcttgttgatgttttgaagataggggtcccagttggagcaaaagtaaacgagttctggaatagc 26088659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 26112265 - 26112447
Alignment:
Q  1 cctgcaacaggaggaattgtgactcattgtggttggaactcaactcttgaaagcattagtgttggtttgccaatgatcacatggccaatgtttgccgaac 100  Q
    |||||||||||||| ||||||||||| |||||||||||||| | |||||||||| | | || |||||||||||||||| |||||||||| ||||| || |    
T  26112265 cctgcaacaggagggattgtgactcactgtggttggaactcgattcttgaaagcttgaatgctggtttgccaatgatcgcatggccaatatttgctgagc 26112364  T
Q  101 aattttacaatgagaggttgcttgttgatgttttgaagataggggtcccagttggagcaaaagaaaacaagttatggaatagc 183  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||    
T  26112365 aattttacaatgaaaagttgcttgttgatgttttgaagataggggtcccagttggagcaaaagtaaacgagttctggaatagc 26112447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 26155883 - 26156065
Alignment:
Q  1 cctgcaacaggaggaattgtgactcattgtggttggaactcaactcttgaaagcattagtgttggtttgccaatgatcacatggccaatgtttgccgaac 100  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||| |||||| | | |  ||||||||||||||| ||||||||||||||||  || |    
T  26155883 cctgcaacaggagggattgtgactcactgtggttggaactcaactctcgaaagcttgaattctggtttgccaatgattacatggccaatgtttggtgatc 26155982  T
Q  101 aattttacaatgagaggttgcttgttgatgttttgaagataggggtcccagttggagcaaaagaaaacaagttatggaatagc 183  Q
    ||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||    
T  26155983 aattttacaatgaaaagttgcttgttgatgttttgaagatagcggtcccagttggagcaaaagaaaataagttatggactagc 26156065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 26302504 - 26302730
Alignment:
Q  1 cctgcaacaggaggaattgtgactcattgtggttggaactcaactcttgaaagcattagtgttggtttgccaatgatcacatggccaatgtttgccgaac 100  Q
    |||||||||||||| ||||||||||| ||| |||||||||||| ||| |||||| | | || |||||||||||||||||||||||| || ||||| || |    
T  26302504 cctgcaacaggagggattgtgactcactgttgttggaactcaattctcgaaagcttgaatgctggtttgccaatgatcacatggcccatttttgctgagc 26302603  T
Q  101 aattttacaatgagaggttgcttgttgatgttttgaagataggggtcccagttggagcaaaagaaaacaagttatggaatagctttagtgtagaggcaat 200  Q
    ||||| |||| |||| ||| |||||||||||||||||||| || ||  | |||||| ||||||| ||| |||| ||||||||  ||||||||||||||||    
T  26302604 aatttaacaacgagaagtttcttgttgatgttttgaagattggagtttctgttggatcaaaagagaacgagttttggaatagaattagtgtagaggcaat 26302703  T
Q  201 tgttagaagggaagagattgcaaaggc 227  Q
    ||| |||||||||||||||||||||||    
T  26302704 tgtgagaagggaagagattgcaaaggc 26302730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 26186943 - 26187160
Alignment:
Q  1 cctgcaacaggaggaattgtgactcattgtggttggaactcaactcttgaaagcattagtgttggtttgccaatgatcacatggccaatgtttgccgaac 100  Q
    |||||||||||||| ||||||||||| ||| |||||||||||| ||| |||||| | |     |||||||||||||||||||||||||||| ||  || |    
T  26186943 cctgcaacaggagggattgtgactcactgttgttggaactcaattctggaaagcgtgaactcgggtttgccaatgatcacatggccaatgtctgaggagc 26187042  T
Q  101 aattttacaatgagaggttgcttgttgatgttttgaagataggggtcccagttggagcaaaagaaaacaagttatggaatagctttagtgtagaggcaat 200  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| | || || | |||||||||| | |||    
T  26187043 aattttacaatgagaagttgcttgttgatgttttgaagataggggtccaagtaggagcaaaagaaaacaagttctagattaacattagtgtagatgaaat 26187142  T
Q  201 tgttagaagggaagagat 218  Q
     || ||||||||||||||    
T  26187143 ggtgagaagggaagagat 26187160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 9 - 171
Target Start/End: Original strand, 26129270 - 26129432
Alignment:
Q  9 aggaggaattgtgactcattgtggttggaactcaactcttgaaagcattagtgttggtttgccaatgatcacatggccaatgtttgccgaacaattttac 108  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| | | || ||||||||||||||| |||||||||| ||||| ||| |||||||||    
T  26129270 aggaggaattgtgactcattgtggttggaactcaactctcgaaagcttaaatgctggtttgccaatgattacatggccaaggtttggcgatcaattttac 26129369  T
Q  109 aatgagaggttgcttgttgatgttttgaagataggggtcccagttggagcaaaagaaaacaag 171  Q
    ||||| | |||||| |||||||||||||||||||||||  |||| ||||||||||||||||||    
T  26129370 aatgaaaagttgctcgttgatgttttgaagataggggtttcagtaggagcaaaagaaaacaag 26129432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 26179778 - 26179972
Alignment:
Q  1 cctgcaacaggaggaattgtgactcattgtggttggaactcaactcttgaaagcattagtgttggtttgccaatgatcacatggccaatgtttgccgaac 100  Q
    |||||||||||||| ||||||||||| |||||||||||||||| |||||||||  | |     ||||||||||||||||| |||||  ||||||| || |    
T  26179778 cctgcaacaggagggattgtgactcactgtggttggaactcaattcttgaaagtgtgaactcgggtttgccaatgatcacgtggccggtgtttgctgagc 26179877  T
Q  101 aattttacaatgagaggttgcttgttgatgttttgaagataggggtcccagttggagcaaaagaaaacaagttatggaatagctttagtgtagag 195  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| || | ||| |||||||    
T  26179878 aattttacaacgagaagttgcttgttgatgttttgaagataggggtcccagtaggagcaaaagaaaacaatttatggattaacattaatgtagag 26179972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 4 - 229
Target Start/End: Original strand, 26243098 - 26243323
Alignment:
Q  4 gcaacaggaggaattgtgactcattgtggttggaactcaactcttgaaagcattagtgttggtttgccaatgatcacatggccaatgtttgccgaacaat 103  Q
    |||||| |||||||||||||||| |||||||||||||||| |||||||||| | | |  ||||||||||||||| || |||||| ||| | | || ||||    
T  26243098 gcaacaagaggaattgtgactcactgtggttggaactcaattcttgaaagcttgaattctggtttgccaatgattacgtggccagtgtcttctgagcaat 26243197  T
Q  104 tttacaatgagaggttgcttgttgatgttttgaagataggggtcccagttggagcaaaagaaaacaagttatggaatagctttagtgtagaggcaattgt 203  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||  |||||||||| ||||||||| ||||  | | |||  ||||| | ||| ||    
T  26243198 tttacaatgagaagttgcttgttgatgttttaaagataggggtcccagcaggagcaaaagtaaacaagttctggatgaacattacagtagatgaaatggt 26243297  T
Q  204 tagaagggaagagattgcaaaggctg 229  Q
     ||||||||||||||| |||||||||    
T  26243298 gagaagggaagagattacaaaggctg 26243323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 19102999 - 19102817
Alignment:
Q  1 cctgcaacaggaggaattgtgactcattgtggttggaactcaactcttgaaagcattagtgttggtttgccaatgatcacatggccaatgtttgccgaac 100  Q
    |||||||||||||| ||||||||||| |||||||||||||||| ||| |||||| | | |   |||||||||||||||||||||||||| ||||| || |    
T  19102999 cctgcaacaggagggattgtgactcactgtggttggaactcaattctcgaaagcttgaattcgggtttgccaatgatcacatggccaatttttgctgagc 19102900  T
Q  101 aattttacaatgagaggttgcttgttgatgttttgaagataggggtcccagttggagcaaaagaaaacaagttatggaatagc 183  Q
    | ||||||||||| | |||||| || |||||||||||||||||||||  ||| |||||||||| |||||||||||||||||||    
T  19102899 agttttacaatgaaaagttgctcgtcgatgttttgaagataggggtcggagtaggagcaaaagtaaacaagttatggaatagc 19102817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 26204580 - 26204742
Alignment:
Q  1 cctgcaacaggaggaattgtgactcattgtggttggaactcaactcttgaaagcattagtgttggtttgccaatgatcacatggccaatgtttgccgaac 100  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||||| | | |  ||||||||||||||| ||||||||||| ||||| ||||    
T  26204580 cctgcaacaggaggaattgtgactcactgtggttggaactcaattcttgaaagcttgaattctggtttgccaatgataacatggccaatatttgctgaac 26204679  T
Q  101 aattttacaatgagaggttgcttgttgatgttttgaagataggggtcccagttggagcaaaag 163  Q
    ||||||||||||||| | |||||||||||||||||||||| || ||| | |||||| ||||||    
T  26204680 aattttacaatgagaagctgcttgttgatgttttgaagattggagtcgcggttggatcaaaag 26204742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 26224217 - 26224379
Alignment:
Q  1 cctgcaacaggaggaattgtgactcattgtggttggaactcaactcttgaaagcattagtgttggtttgccaatgatcacatggccaatgtttgccgaac 100  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||||| | | |  ||||||||||||||| ||||||||||| ||||| ||||    
T  26224217 cctgcaacaggaggaattgtgactcactgtggttggaactcaattcttgaaagcttgaattctggtttgccaatgataacatggccaatatttgctgaac 26224316  T
Q  101 aattttacaatgagaggttgcttgttgatgttttgaagataggggtcccagttggagcaaaag 163  Q
    ||||||||||||||| | |||||||||||||||||||||| || ||| | |||||| ||||||    
T  26224317 aattttacaatgagaagctgcttgttgatgttttgaagattggagtcgcggttggatcaaaag 26224379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 26208106 - 26208268
Alignment:
Q  1 cctgcaacaggaggaattgtgactcattgtggttggaactcaactcttgaaagcattagtgttggtttgccaatgatcacatggccaatgtttgccgaac 100  Q
    |||||||||||||| || |||||||||||||||||||| |||| |||||||||| ||||||||||||| || |||||  |||||||||||||||| || |    
T  26208106 cctgcaacaggagggatagtgactcattgtggttggaattcaattcttgaaagccttagtgttggtttacccatgattgcatggccaatgtttgctgagc 26208205  T
Q  101 aattttacaatgagaggttgcttgttgatgttttgaagataggggtcccagttggagcaaaag 163  Q
    |||||||||||||||  ||||||||||||||||||||||| || ||  |||||||| ||||||    
T  26208206 aattttacaatgagaaattgcttgttgatgttttgaagattggagtttcagttggatcaaaag 26208268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 26260567 - 26260739
Alignment:
Q  1 cctgcaacaggaggaattgtgactcattgtggttggaactcaactcttgaaagcattagtgttggtttgccaatgatcacatggccaatgtttgccgaac 100  Q
    |||||||||||||| ||||||||||| ||||| |||||||||| |||||||||| | |     ||||||||||||||  |||||||||||||||| || |    
T  26260567 cctgcaacaggagggattgtgactcactgtggatggaactcaattcttgaaagcttgaactcgggtttgccaatgattgcatggccaatgtttgctgagc 26260666  T
Q  101 aattttacaatgagaggttgcttgttgatgttttgaagataggggtcccagttggagcaaaagaaaacaagtt 173  Q
    ||||||||||||||| |||||||||||||||||||||||| || ||  |||||||| ||||||  ||||||||    
T  26260667 aattttacaatgagaagttgcttgttgatgttttgaagattggagtttcagttggatcaaaagtgaacaagtt 26260739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 26227667 - 26227808
Alignment:
Q  1 cctgcaacaggaggaattgtgactcattgtggttggaactcaactcttgaaagcattagtgttggtttgccaatgatcacatggccaatgtttgccgaac 100  Q
    |||||||||| |||  | ||||||||||||||||||||||||| |||||||||| | |||||| |||||||||| || ||||||||||||||||| || |    
T  26227667 cctgcaacagcaggggtagtgactcattgtggttggaactcaattcttgaaagcttgagtgttagtttgccaattattacatggccaatgtttgcggagc 26227766  T
Q  101 aattttacaatgagaggttgcttgttgatgttttgaagatag 142  Q
    | ||||||||||||| | | ||||||  ||||||||||||||    
T  26227767 agttttacaatgagaagcttcttgtttttgttttgaagatag 26227808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 136
Target Start/End: Complemental strand, 17572530 - 17572404
Alignment:
Q  10 ggaggaattgtgactcattgtggttggaactcaactcttgaaagcattagtgttggtttgccaatgatcacatggccaatgtttgccgaacaattttaca 109  Q
    |||||||| |||| |||||||||||||||  |||   |||||||||| | |||||||||||| ||| | || |||||  ||||||| ||||| ||||  |    
T  17572530 ggaggaatggtgagtcattgtggttggaatacaatagttgaaagcatgaatgttggtttgcctatggtgacttggcctttgtttgctgaacattttttta 17572431  T
Q  110 atgagaggttgcttgttgatgttttga 136  Q
    |||||| |||| |||||||||| ||||    
T  17572430 atgagaagttggttgttgatgtgttga 17572404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 165
Target Start/End: Complemental strand, 16908600 - 16908517
Alignment:
Q  82 tggccaatgtttgccgaacaattttacaatgagaggttgcttgttgatgttttgaagataggggtcccagttggagcaaaagaa 165  Q
    |||||| ||||||| ||||| |||| ||||||||| ||| | |||||||| |||||||| || ||  |||||||||||||||||    
T  16908600 tggccattgtttgctgaacagtttttcaatgagagattgttggttgatgtgttgaagattggtgtggcagttggagcaaaagaa 16908517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 161
Target Start/End: Original strand, 14870059 - 14870138
Alignment:
Q  82 tggccaatgtttgccgaacaattttacaatgagaggttgcttgttgatgttttgaagataggggtcccagttggagcaaa 161  Q
    |||||| ||||||| ||||| |||| ||||||||| ||| | |||||||| |||||||| || ||  |||||||||||||    
T  14870059 tggccattgtttgctgaacagtttttcaatgagagattgttggttgatgtgttgaagattggtgtggcagttggagcaaa 14870138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 39
Target Start/End: Original strand, 12613700 - 12613729
Alignment:
Q  10 ggaggaattgtgactcattgtggttggaac 39  Q
    ||||||||||||||||||||||||||||||    
T  12613700 ggaggaattgtgactcattgtggttggaac 12613729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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