View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0743_low_120 (Length: 250)
Name: NF0743_low_120
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_low_120 |
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Alignment Details
Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 110 - 239
Target Start/End: Original strand, 376809 - 376938
Alignment:
| Q |
110 |
taaattactctttcctctcnnnnnnnccatttatttattttaaattttaaacaacaatgactgacaggtatacataccctttttaagaggatttatcata |
209 |
Q |
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| T |
376809 |
taaattactctttcctctcaaaaaaaccatttatttattttaaattttaaacaacaatgactgacaagtatacataccctttttaagaggatttatcata |
376908 |
T |
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| Q |
210 |
aactacacagcggagactatagtcattcat |
239 |
Q |
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| T |
376909 |
aactacacagcggagactatagtcattcat |
376938 |
T |
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Target: chr2; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 376669 - 376765
Alignment:
| Q |
1 |
cataaaaaataatatgtagttcatgaatgtacattgatttgggaccgtgactataaagtatttctaaggataataatgtaatatgatggcatcactt |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
376669 |
cataaaaaataatatgtagttcatgaatgtacattgatttgggaccgtgactataaagtatttctaaggataataatgtaatatgatggcatcactt |
376765 |
T |
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