View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0743_low_121 (Length: 250)
Name: NF0743_low_121
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_low_121 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 27430562 - 27430324
Alignment:
| Q |
1 |
tttaaatttcagtatatgcacgagttaattttcgagtttacagaatttagatcaaattactgtacttcacaagagctaaagagagataaattacaattaa |
100 |
Q |
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| T |
27430562 |
tttaaatttcagtatatgcacgagttaattttcgagtttacagaatttagatcaaattactgtacttcacaagagctaaagagagataaagtagaattaa |
27430463 |
T |
|
| Q |
101 |
tcaataagaatttatacacagaataaacttatacgcgagattttaatttaaagattaaattgtaagtaatgatttcatacttcatgctttgtagggattg |
200 |
Q |
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| T |
27430462 |
tcaataagaatttatacacagaataaacttctacgcgtga--ttaatttaaagattaaattgtaagtaatgatttcatacttcatgctttgtagggattg |
27430365 |
T |
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| Q |
201 |
ataacccttagcatgatttatacattgaaaggaagtataat |
241 |
Q |
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| T |
27430364 |
ataacccttagcatgatttatacattgaaaggaagtataat |
27430324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 153 - 220
Target Start/End: Original strand, 27568465 - 27568532
Alignment:
| Q |
153 |
gattaaattgtaagtaatgatttcatacttcatgctttgtagggattgataacccttagcatgattta |
220 |
Q |
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| T |
27568465 |
gattaaattctaagtaatgatttcatacttcaggatttgtagggattgatcaccattaggatgattta |
27568532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 220
Target Start/End: Original strand, 27558332 - 27558392
Alignment:
| Q |
160 |
ttgtaagtaatgatttcatacttcatgctttgtagggattgataacccttagcatgattta |
220 |
Q |
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| T |
27558332 |
ttgtaagtaattatttcatacttcaatatttatagggattgatcacccttaggatgattta |
27558392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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