View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0743_low_123 (Length: 243)
Name: NF0743_low_123
Description: NF0743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0743_low_123 |
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Alignment Details
Target: chr5 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 37411366 - 37411256
Alignment:
| Q |
15 |
agctgttgctgcaaaaattagtacacaaacacaaaataatttgttagaaaaattattaggctgagttgcggattagttcgctttctttaaaacgatttgc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| || |
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| T |
37411366 |
agctgttgctgcaaaaattagtacacaaacacaaaataatttgttagaaaaattattaggctgagttgcggattagttcgctttttttaagacgattcgc |
37411267 |
T |
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| Q |
115 |
agctctgcttc |
125 |
Q |
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| T |
37411266 |
agctctgcttc |
37411256 |
T |
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Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 21795812 - 21795700
Alignment:
| Q |
18 |
tgttgctgcaaaaattagtacacaaacacaaaa--taatttgttagaaaaattattaggctgagttgcggattagttcgctttctttaaaacgatttgca |
115 |
Q |
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|||||||| ||||||| |||||||||||||||| |||||||||| ||||||||||||||||||| ||||| ||| ||||||||||||| |||||| ||| |
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| T |
21795812 |
tgttgctgaaaaaattggtacacaaacacaaaaaataatttgttaaaaaaattattaggctgagtcgcggactaggtcgctttctttaagacgattagca |
21795713 |
T |
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| Q |
116 |
gctctgcttcaaa |
128 |
Q |
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| T |
21795712 |
gctctgcttcaaa |
21795700 |
T |
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Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 19074107 - 19074219
Alignment:
| Q |
18 |
tgttgctgcaaaaattagtacacaaacacaaaa--taatttgttagaaaaattattaggctgagttgcggattagttcgctttctttaaaacgatttgca |
115 |
Q |
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| T |
19074107 |
tgttgctgaaaaaattagtacacaaacacaaaaaataatttgttaaaaaaattattaggttgagtcgcagaccagatcgctttctttaagacgattcgca |
19074206 |
T |
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| Q |
116 |
gctctgcttcaaa |
128 |
Q |
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| T |
19074207 |
gctctgcttcaaa |
19074219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 19121997 - 19122109
Alignment:
| Q |
18 |
tgttgctgcaaaaattagtacacaaacacaaaa--taatttgttagaaaaattattaggctgagttgcggattagttcgctttctttaaaacgatttgca |
115 |
Q |
| |
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|||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||| ||||| || || || ||||||||||||| |||||| ||| |
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| T |
19121997 |
tgttgctgaaaaaattagtacacaaacacaaaaaataatttgttaaaaaaattattaggttgagtcgcagaccagatcgctttctttaagacgattcgca |
19122096 |
T |
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| Q |
116 |
gctctgcttcaaa |
128 |
Q |
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| T |
19122097 |
gctctgcttcaaa |
19122109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 36640440 - 36640527
Alignment:
| Q |
17 |
ctgttgctgcaaaaattagtacacaaacacaaaataatttgttagaaaa-attattaggctgagttgcggattagttcgctttctttaa |
104 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||| ||| ||||||||||||| |
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| T |
36640440 |
ctgttgctg-aaaaattagtacacaaacacaaaataatttgttaaaaaacattattaggctgagtcgcggactagatcgctttctttaa |
36640527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 48767473 - 48767521
Alignment:
| Q |
168 |
ctgttgccggcaaattggttggagctactatgagaagaagtgccatggt |
216 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
48767473 |
ctgtggccggcaaattggttggagctactatgagaagaagtgccttggt |
48767521 |
T |
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